Wall clock time and date at job start Sat Apr 11 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.51585 * 135.78061 * 2 1 4 4 C 1.53836 * 86.75475 * 154.85170 * 3 2 1 5 5 C 1.53002 * 113.65321 * 270.21989 * 4 3 2 6 6 C 1.50701 * 113.65876 * 139.27266 * 4 3 2 7 7 O 1.21275 * 119.99632 * 359.97438 * 6 4 3 8 8 N 1.34769 * 119.99690 * 179.97438 * 6 4 3 9 9 C 1.46505 * 119.99686 * 179.97438 * 8 6 4 10 10 H 1.09002 * 109.47068 * 324.99893 * 9 8 6 11 11 C 1.53002 * 109.47411 * 84.99974 * 9 8 6 12 12 C 1.53003 * 109.46754 * 294.99930 * 11 9 8 13 13 C 1.52997 * 109.47212 * 204.99833 * 9 8 6 14 14 N 1.46500 * 109.47170 * 54.99826 * 13 9 8 15 15 C 1.34777 * 120.00168 * 180.02562 * 14 13 9 16 16 O 1.21278 * 119.99916 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99931 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47028 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00098 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99909 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00376 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99430 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00194 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47393 * 89.99772 * 23 21 19 25 25 H 1.48502 * 109.47024 * 210.00078 * 23 21 19 26 26 H 1.48505 * 109.47262 * 329.99610 * 23 21 19 27 27 C 1.51581 * 135.78211 * 180.02562 * 2 1 3 28 28 H 1.08003 * 120.00105 * 359.97438 * 1 2 3 29 29 H 1.07998 * 119.99610 * 180.02562 * 1 2 3 30 30 H 1.09001 * 113.66338 * 40.37843 * 3 2 1 31 31 H 1.08996 * 113.74836 * 269.32745 * 3 2 1 32 32 H 1.09002 * 109.47548 * 298.33090 * 5 4 3 33 33 H 1.08995 * 109.47462 * 58.34037 * 5 4 3 34 34 H 1.09005 * 109.47183 * 178.33661 * 5 4 3 35 35 H 0.97000 * 120.00680 * 359.97438 * 8 6 4 36 36 H 1.09000 * 109.47059 * 54.99891 * 11 9 8 37 37 H 1.08996 * 109.47073 * 174.99983 * 11 9 8 38 38 H 1.09000 * 109.47306 * 299.99810 * 12 11 9 39 39 H 1.09000 * 109.46927 * 59.99869 * 12 11 9 40 40 H 1.09001 * 109.47198 * 179.97438 * 12 11 9 41 41 H 1.08998 * 109.47192 * 174.99746 * 13 9 8 42 42 H 1.09000 * 109.47325 * 294.99862 * 13 9 8 43 43 H 0.97004 * 120.00188 * 0.02562 * 14 13 9 44 44 H 1.09002 * 109.47475 * 299.99556 * 17 15 14 45 45 H 1.09001 * 109.47706 * 59.99630 * 17 15 14 46 46 H 0.97003 * 119.99249 * 179.97438 * 22 21 19 47 47 H 1.08995 * 113.66638 * 90.68653 * 27 2 1 48 48 H 1.08995 * 113.66661 * 319.61433 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0572 0.0000 4 6 3.3036 0.0000 0.6527 5 6 3.2462 0.0015 2.1816 6 6 4.7130 0.0001 0.1192 7 8 5.0341 0.7878 -0.7452 8 7 5.6165 -0.8752 0.6027 9 6 6.9866 -0.8755 0.0837 10 1 6.9724 -0.6344 -0.9793 11 6 7.8160 0.1695 0.8327 12 6 7.2692 1.5663 0.5311 13 6 7.6077 -2.2592 0.2845 14 7 6.7494 -3.2740 -0.3317 15 6 7.0987 -4.5746 -0.2786 16 8 8.1239 -4.9048 0.2789 17 6 6.2160 -5.6183 -0.9129 18 16 6.9508 -7.2553 -0.6752 19 6 5.7476 -8.2520 -1.4896 20 1 4.8808 -7.7918 -1.9406 21 6 5.9136 -9.6287 -1.5517 22 7 6.9702 -10.1896 -1.0025 23 14 4.6383 -10.6853 -2.4158 24 1 5.0011 -10.8265 -3.8488 25 1 4.5954 -12.0273 -1.7815 26 1 3.3045 -10.0421 -2.3039 27 6 2.3964 -1.0571 -0.0005 28 1 -0.5400 0.9353 0.0004 29 1 -0.5399 -0.9353 0.0004 30 1 2.1795 1.9073 0.6468 31 1 2.7192 1.3549 -0.9976 32 1 3.5891 0.9656 2.5573 33 1 2.2204 -0.1712 2.5069 34 1 3.8884 -0.7890 2.5701 35 1 5.3598 -1.5050 1.2943 36 1 7.7573 -0.0202 1.9044 37 1 8.8551 0.1084 0.5093 38 1 7.3280 1.7559 -0.5407 39 1 6.2301 1.6273 0.8545 40 1 7.8598 2.3107 1.0650 41 1 8.5932 -2.2860 -0.1804 42 1 7.7034 -2.4632 1.3510 43 1 5.9296 -3.0098 -0.7779 44 1 5.2301 -5.5914 -0.4487 45 1 6.1210 -5.4145 -1.9795 46 1 7.0860 -11.1517 -1.0456 47 1 2.7183 -1.3532 -0.9988 48 1 2.1797 -1.9075 0.6460 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001746114975.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:36 Heat of formation + Delta-G solvation = -67.162465 kcal Electronic energy + Delta-G solvation = -27305.243639 eV Core-core repulsion = 23486.288774 eV Total energy + Delta-G solvation = -3818.954865 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.84072 -40.65156 -39.31468 -37.39333 -34.99599 -34.57635 -33.66381 -32.09925 -31.41388 -29.09137 -28.52476 -27.63857 -26.88547 -24.90192 -24.14463 -22.00370 -21.52656 -20.76848 -19.82934 -18.68831 -18.05993 -17.80668 -17.62076 -17.03130 -16.87117 -16.52747 -16.47730 -15.80884 -15.69131 -15.54923 -15.23507 -14.81554 -14.59873 -14.49587 -14.42661 -14.10717 -14.03471 -13.48762 -13.42472 -13.17399 -13.15851 -12.99362 -12.88144 -12.84355 -12.63775 -12.51689 -12.36002 -12.10901 -11.86147 -11.75850 -11.71648 -11.14715 -11.14041 -10.98474 -10.66324 -10.27101 -10.16926 -10.07827 -9.98824 -8.65652 -8.34476 -6.11964 1.27052 1.30436 1.42595 1.47229 1.57300 1.60423 1.61584 2.11180 2.26970 2.31758 2.99915 3.32081 3.34674 3.47333 3.55029 3.58657 3.90832 3.93703 3.97485 4.03810 4.12571 4.29126 4.39414 4.44492 4.51453 4.54324 4.66753 4.68822 4.78269 4.79558 4.81238 4.88453 4.93529 4.95708 5.01650 5.08264 5.16188 5.21509 5.27836 5.36284 5.42461 5.44471 5.52190 5.56129 5.99678 6.20191 6.43258 6.52667 7.07251 7.20721 7.24719 8.74642 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010922 B = 0.002623 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2563.008521 B =10671.693800 C =12787.364025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.163 4.163 3 C -0.083 4.083 4 C -0.100 4.100 5 C -0.124 4.124 6 C 0.533 3.467 7 O -0.563 6.563 8 N -0.714 5.714 9 C 0.145 3.855 10 H 0.084 0.916 11 C -0.128 4.128 12 C -0.137 4.137 13 C 0.116 3.884 14 N -0.713 5.713 15 C 0.537 3.463 16 O -0.561 6.561 17 C -0.131 4.131 18 S -0.148 6.148 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.014 3.986 22 N -0.911 5.911 23 Si 0.997 3.003 24 H -0.269 1.269 25 H -0.278 1.278 26 H -0.257 1.257 27 C -0.089 4.089 28 H 0.115 0.885 29 H 0.114 0.886 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.411 0.589 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.043 0.957 39 H 0.045 0.955 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.078 0.922 43 H 0.412 0.588 44 H 0.111 0.889 45 H 0.105 0.895 46 H 0.271 0.729 47 H 0.088 0.912 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.559 25.853 5.400 28.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.163 4.163 3 C -0.120 4.120 4 C -0.103 4.103 5 C -0.181 4.181 6 C 0.321 3.679 7 O -0.441 6.441 8 N -0.367 5.367 9 C 0.040 3.960 10 H 0.102 0.898 11 C -0.166 4.166 12 C -0.195 4.195 13 C -0.008 4.008 14 N -0.367 5.367 15 C 0.323 3.677 16 O -0.439 6.439 17 C -0.282 4.282 18 S 0.079 5.921 19 C -0.694 4.694 20 H 0.100 0.900 21 C -0.191 4.191 22 N -0.547 5.547 23 Si 0.819 3.181 24 H -0.195 1.195 25 H -0.203 1.203 26 H -0.181 1.181 27 C -0.126 4.126 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.101 0.899 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.093 0.907 35 H 0.248 0.752 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.062 0.938 39 H 0.064 0.936 40 H 0.075 0.925 41 H 0.097 0.903 42 H 0.096 0.904 43 H 0.248 0.752 44 H 0.129 0.871 45 H 0.123 0.877 46 H 0.080 0.920 47 H 0.107 0.893 48 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.500 25.737 5.757 27.709 hybrid contribution -1.894 -0.612 -1.091 2.270 sum -10.394 25.125 4.666 27.588 Atomic orbital electron populations 1.23119 0.93240 1.03145 1.00551 1.22779 0.94131 0.97679 1.01702 1.22185 0.92587 0.95950 1.01320 1.21980 0.89826 1.00255 0.98222 1.21591 1.03785 1.03131 0.89636 1.20518 0.86843 0.79409 0.81160 1.90703 1.80531 1.40091 1.32819 1.46048 1.10229 1.37953 1.42430 1.21176 0.81741 0.93298 0.99777 0.89755 1.21864 0.99738 0.93940 1.01097 1.21704 1.00527 0.96185 1.01044 1.21703 0.94395 0.85315 0.99388 1.45707 1.27288 1.04775 1.58902 1.19984 0.85340 0.83536 0.78880 1.90704 1.26908 1.81554 1.44719 1.23377 1.02902 0.97298 1.04664 1.85551 1.34629 0.96696 1.75179 1.23204 1.09916 0.94666 1.41626 0.89980 1.26105 0.98446 0.98534 0.96000 1.70180 1.29119 1.11900 1.43542 0.84977 0.78118 0.76990 0.78057 1.19475 1.20305 1.18126 1.22294 0.92884 0.96172 1.01235 0.86663 0.86746 0.89931 0.89445 0.91515 0.90593 0.90706 0.75196 0.90295 0.89733 0.93778 0.93575 0.92499 0.90326 0.90361 0.75188 0.87051 0.87667 0.92002 0.89336 0.88754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.93 14.71 67.78 1.00 -0.93 16 2 C -0.16 -2.24 6.60 -15.98 -0.11 -2.34 16 3 C -0.08 -1.24 6.98 30.41 0.21 -1.03 16 4 C -0.10 -1.32 1.27 -52.41 -0.07 -1.39 16 5 C -0.12 -1.18 8.98 71.98 0.65 -0.53 16 6 C 0.53 8.93 5.50 87.66 0.48 9.41 16 7 O -0.56 -13.30 13.03 -3.01 -0.04 -13.34 16 8 N -0.71 -9.52 4.36 -442.54 -1.93 -11.45 16 9 C 0.15 2.20 2.42 44.99 0.11 2.31 16 10 H 0.08 1.56 7.58 -2.39 -0.02 1.54 16 11 C -0.13 -1.73 5.61 30.60 0.17 -1.56 16 12 C -0.14 -2.27 8.51 71.98 0.61 -1.66 16 13 C 0.12 2.16 5.23 86.38 0.45 2.61 16 14 N -0.71 -16.05 5.39 -463.07 -2.49 -18.54 16 15 C 0.54 18.42 7.85 87.66 0.69 19.11 16 16 O -0.56 -24.45 15.86 -3.02 -0.05 -24.49 16 17 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 18 S -0.15 -8.01 20.57 -56.49 -1.16 -9.17 16 19 C -0.55 -30.68 9.50 67.96 0.65 -30.04 16 20 H 0.08 4.28 7.80 -2.91 -0.02 4.25 16 21 C 0.01 0.79 5.49 84.86 0.47 1.25 16 22 N -0.91 -55.37 13.22 21.65 0.29 -55.08 16 23 Si 1.00 43.04 29.55 68.60 2.03 45.06 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 26 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 27 C -0.09 -1.17 7.18 30.42 0.22 -0.95 16 28 H 0.12 1.11 8.06 -2.91 -0.02 1.08 16 29 H 0.11 1.16 8.06 -2.91 -0.02 1.14 16 30 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 31 H 0.09 1.63 7.42 -2.39 -0.02 1.61 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.68 7.70 -2.39 -0.02 0.66 16 34 H 0.07 0.55 7.04 -2.38 -0.02 0.53 16 35 H 0.41 4.28 7.50 -92.71 -0.70 3.59 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.04 0.87 7.85 -2.39 -0.02 0.85 16 39 H 0.05 0.86 5.64 -2.39 -0.01 0.85 16 40 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.41 7.37 8.14 -92.71 -0.75 6.62 16 44 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 45 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 46 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 47 H 0.09 1.31 8.09 -2.39 -0.02 1.29 16 48 H 0.09 1.05 8.10 -2.39 -0.02 1.03 16 Total: -1.00 -76.24 405.83 2.12 -74.11 By element: Atomic # 1 Polarization: 23.65 SS G_CDS: -0.49 Total: 23.16 kcal Atomic # 6 Polarization: -16.23 SS G_CDS: 5.97 Total: -10.27 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -4.14 Total: -85.07 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -0.09 Total: -37.83 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.06 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.17 kcal Total: -76.24 2.12 -74.11 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001746114975.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.950 kcal (2) G-P(sol) polarization free energy of solvation -76.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds