Wall clock time and date at job start Sat Apr 11 2020 06:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46882 * 2 1 4 4 H 1.08997 * 109.47047 * 55.00073 * 3 2 1 5 5 C 1.52999 * 109.46830 * 295.00092 * 3 2 1 6 6 C 1.50701 * 109.47040 * 175.00353 * 3 2 1 7 7 O 1.21278 * 120.00272 * 35.49707 * 6 3 2 8 8 N 1.34775 * 119.99445 * 215.50082 * 6 3 2 9 9 C 1.47855 * 134.36986 * 356.98574 * 8 6 3 10 10 C 1.52566 * 85.66168 * 156.37272 * 9 8 6 11 11 C 1.47863 * 134.36132 * 176.98797 * 8 6 3 12 12 C 1.53920 * 115.92435 * 264.97541 * 10 9 8 13 13 C 1.55149 * 101.43524 * 264.39905 * 12 10 9 14 14 N 1.47542 * 105.01071 * 324.38577 * 13 12 10 15 15 C 1.34781 * 125.65364 * 203.91577 * 14 13 12 16 16 O 1.21284 * 119.99441 * 179.97438 * 15 14 13 17 17 C 1.50697 * 120.00719 * 359.97438 * 15 14 13 18 18 S 1.80989 * 109.47473 * 180.02562 * 17 15 14 19 19 C 1.76200 * 100.00314 * 179.97438 * 18 17 15 20 20 H 1.08002 * 119.99634 * 359.97438 * 19 18 17 21 21 C 1.38801 * 120.00248 * 179.97438 * 19 18 17 22 22 N 1.31623 * 119.99890 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99686 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47204 * 90.00523 * 23 21 19 25 25 H 1.48501 * 109.46854 * 209.99911 * 23 21 19 26 26 H 1.48500 * 109.47347 * 329.99700 * 23 21 19 27 27 C 1.47359 * 108.68235 * 23.90752 * 14 13 12 28 28 H 1.09000 * 109.47568 * 60.00530 * 1 2 3 29 29 H 1.09004 * 109.46897 * 179.97438 * 1 2 3 30 30 H 1.09007 * 109.47228 * 299.99563 * 1 2 3 31 31 H 1.08996 * 109.47125 * 239.99939 * 2 1 3 32 32 H 1.09000 * 109.47568 * 119.99470 * 2 1 3 33 33 H 1.08997 * 109.47771 * 65.50016 * 5 3 2 34 34 H 1.09007 * 109.47010 * 185.49566 * 5 3 2 35 35 H 1.09000 * 109.47624 * 305.49193 * 5 3 2 36 36 H 1.09008 * 113.83794 * 42.18780 * 9 8 6 37 37 H 1.08998 * 113.95561 * 270.57935 * 9 8 6 38 38 H 1.09000 * 113.84016 * 89.44109 * 11 8 6 39 39 H 1.09000 * 113.84015 * 317.81266 * 11 8 6 40 40 H 1.09002 * 111.00471 * 146.36998 * 12 10 9 41 41 H 1.09007 * 111.04328 * 22.44966 * 12 10 9 42 42 H 1.08994 * 110.33727 * 205.49761 * 13 12 10 43 43 H 1.09008 * 110.42221 * 83.30945 * 13 12 10 44 44 H 1.09010 * 109.46621 * 300.00125 * 17 15 14 45 45 H 1.08994 * 109.47033 * 59.99328 * 17 15 14 46 46 H 0.97007 * 119.99956 * 179.97438 * 22 21 19 47 47 H 1.09002 * 109.97839 * 117.31814 * 27 14 13 48 48 H 1.08996 * 109.98383 * 238.57333 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6351 2.1265 -1.3073 6 6 3.5418 1.4444 0.1237 7 8 4.1953 0.5727 -0.4092 8 7 4.1588 2.4148 0.8267 9 6 3.7001 3.6273 1.5378 10 6 4.9818 3.4926 2.3543 11 6 5.5641 2.6909 1.1942 12 6 4.8514 2.7437 3.6927 13 6 4.6612 3.9202 4.6861 14 7 5.5077 5.0071 4.1579 15 6 6.0190 6.0253 4.8780 16 8 6.7052 6.8661 4.3366 17 6 5.7379 6.1191 6.3555 18 16 6.5559 7.5844 7.0335 19 6 6.0731 7.4504 8.7227 20 1 5.4503 6.6281 9.0427 21 6 6.4931 8.4016 9.6421 22 7 7.2517 9.4041 9.2520 23 14 5.9816 8.2591 11.4331 24 1 6.9901 7.4593 12.1737 25 1 5.8895 9.6153 12.0309 26 1 4.6589 7.5896 11.5184 27 6 5.7017 4.7944 2.7127 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8900 33 1 0.5494 2.2126 -1.3514 34 1 2.0804 3.1206 -1.3504 35 1 1.9871 1.5339 -2.1517 36 1 2.7898 3.4794 2.1189 37 1 3.6669 4.5203 0.9137 38 1 6.0993 3.2979 0.4640 39 1 6.1202 1.8065 1.5051 40 1 5.7597 2.1847 3.9177 41 1 3.9806 2.0881 3.6912 42 1 4.9937 3.6316 5.6832 43 1 3.6169 4.2317 4.7113 44 1 4.6626 6.1965 6.5166 45 1 6.1167 5.2274 6.8547 46 1 7.5449 10.0691 9.8945 47 1 5.2708 5.6246 2.1530 48 1 6.7647 4.7063 2.4885 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001756827021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:47 Heat of formation + Delta-G solvation = -44.421474 kcal Electronic energy + Delta-G solvation = -26980.669135 eV Core-core repulsion = 23162.700393 eV Total energy + Delta-G solvation = -3817.968742 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.45860 -39.65428 -38.52014 -36.08396 -35.70530 -32.45463 -31.67751 -30.34310 -29.88148 -28.99170 -26.93361 -26.43592 -25.51954 -25.12493 -23.33298 -21.70262 -19.68017 -19.55822 -18.89943 -17.73282 -17.45617 -16.80508 -16.57495 -16.18513 -15.82909 -15.33902 -15.02577 -14.82668 -14.50476 -14.25058 -14.09938 -13.94752 -13.81428 -13.42439 -13.17784 -13.05887 -12.82165 -12.63862 -12.58904 -12.53155 -12.21455 -12.17541 -11.98657 -11.81241 -11.57792 -11.42272 -11.24934 -11.14580 -11.08513 -11.04564 -10.93975 -10.78716 -9.96251 -9.83749 -9.46791 -9.11383 -9.09030 -8.59695 -8.26396 -6.53218 -6.24035 -3.94978 2.25901 2.37069 2.83265 3.00655 3.20498 3.23514 3.28309 3.55544 3.76533 3.89744 3.99246 4.18040 4.26699 4.33293 4.47191 4.50384 4.77526 4.88265 4.90343 4.93900 4.98128 5.02015 5.03411 5.09542 5.10766 5.11203 5.19167 5.27155 5.32057 5.38815 5.42137 5.47735 5.50734 5.54552 5.55672 5.61565 5.62774 5.70653 5.75712 5.79465 5.87599 5.89710 6.09539 6.31522 7.28133 7.56663 7.58977 7.80736 8.32668 8.49694 9.21244 10.83351 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023722 B = 0.001918 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1180.070085 B =14592.410962 C =15208.708392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.108 4.108 3 C -0.104 4.104 4 H 0.088 0.912 5 C -0.140 4.140 6 C 0.540 3.460 7 O -0.541 6.541 8 N -0.644 5.644 9 C 0.117 3.883 10 C -0.110 4.110 11 C 0.124 3.876 12 C -0.106 4.106 13 C 0.102 3.898 14 N -0.627 5.627 15 C 0.549 3.451 16 O -0.514 6.514 17 C -0.147 4.147 18 S -0.061 6.061 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.126 3.874 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.074 0.926 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.088 0.912 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.082 0.918 43 H 0.070 0.930 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.073 0.927 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.254 -17.576 -17.984 28.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.146 4.146 3 C -0.125 4.125 4 H 0.106 0.894 5 C -0.198 4.198 6 C 0.330 3.670 7 O -0.418 6.418 8 N -0.380 5.380 9 C -0.005 4.005 10 C -0.111 4.111 11 C 0.002 3.998 12 C -0.144 4.144 13 C -0.021 4.021 14 N -0.365 5.365 15 C 0.338 3.662 16 O -0.388 6.388 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C 0.003 3.997 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.074 0.926 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.106 0.894 37 H 0.112 0.888 38 H 0.109 0.891 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.104 0.896 42 H 0.100 0.900 43 H 0.088 0.912 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.091 0.909 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.854 -16.711 -19.091 28.005 hybrid contribution -1.131 -0.968 1.818 2.350 sum -12.985 -17.680 -17.273 27.920 Atomic orbital electron populations 1.21824 0.95112 1.02051 1.02026 1.21402 0.95862 0.94004 1.03318 1.21279 0.91245 0.99316 1.00710 0.89364 1.21747 1.02127 1.00290 0.95627 1.20441 0.90061 0.80250 0.76220 1.90705 1.67466 1.37461 1.46125 1.50186 1.09770 1.24425 1.53599 1.23171 0.97784 0.87508 0.92074 1.22532 0.96620 0.96437 0.95497 1.22982 0.84768 0.98617 0.93424 1.22481 1.03580 0.96666 0.91664 1.22351 0.95246 0.86284 0.98262 1.48586 1.52860 1.26543 1.08502 1.20043 0.78466 0.79332 0.88396 1.90719 1.37201 1.38833 1.72051 1.23507 1.05487 1.07266 0.93464 1.85413 1.66029 1.25566 1.06391 1.22850 1.37713 1.14327 0.93463 0.90925 1.24994 0.94677 0.94476 0.99443 1.70015 1.32929 1.12114 1.35158 0.86166 0.78955 0.77666 0.82701 1.20261 1.20744 1.19692 1.21544 1.00655 0.95103 0.82429 0.92315 0.92347 0.92602 0.90775 0.91745 0.91052 0.92356 0.91769 0.89382 0.88846 0.89129 0.89424 0.89614 0.89596 0.89977 0.91194 0.89273 0.89283 0.92160 0.90909 0.90634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.67 37.16 0.36 -0.39 16 2 C -0.11 -0.74 4.99 -26.73 -0.13 -0.87 16 3 C -0.10 -0.71 2.59 -91.77 -0.24 -0.94 16 4 H 0.09 0.47 7.49 -51.93 -0.39 0.08 16 5 C -0.14 -0.82 8.79 37.16 0.33 -0.49 16 6 C 0.54 5.31 7.05 -10.99 -0.08 5.23 16 7 O -0.54 -7.49 17.11 5.56 0.10 -7.40 16 8 N -0.64 -5.19 3.62 -185.62 -0.67 -5.86 16 9 C 0.12 0.69 7.62 -3.52 -0.03 0.67 16 10 C -0.11 -0.78 0.98 -154.68 -0.15 -0.93 16 11 C 0.12 0.94 8.16 -3.52 -0.03 0.91 16 12 C -0.11 -0.74 6.42 -25.11 -0.16 -0.90 16 13 C 0.10 0.93 6.71 -2.33 -0.02 0.91 16 14 N -0.63 -8.13 3.34 -170.80 -0.57 -8.70 16 15 C 0.55 10.07 7.87 -10.99 -0.09 9.98 16 16 O -0.51 -11.52 16.19 5.55 0.09 -11.43 16 17 C -0.15 -2.89 5.17 36.00 0.19 -2.71 16 18 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 19 C -0.54 -15.01 9.50 30.94 0.29 -14.71 16 20 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 23 Si 0.92 21.11 29.55 -169.99 -5.02 16.08 16 24 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 27 C 0.13 1.28 6.38 -3.56 -0.02 1.26 16 28 H 0.06 0.26 6.69 -51.93 -0.35 -0.09 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.60 8.02 -51.93 -0.42 0.18 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.31 6.84 -51.93 -0.36 -0.05 16 34 H 0.06 0.33 8.14 -51.92 -0.42 -0.09 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.09 0.41 7.82 -51.92 -0.41 0.00 16 37 H 0.09 0.48 8.00 -51.93 -0.42 0.06 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.70 8.12 -51.93 -0.42 0.27 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.09 0.50 8.06 -51.93 -0.42 0.08 16 42 H 0.08 0.76 7.48 -51.93 -0.39 0.37 16 43 H 0.07 0.56 8.14 -51.92 -0.42 0.13 16 44 H 0.09 1.62 8.14 -51.91 -0.42 1.20 16 45 H 0.09 1.63 7.85 -51.92 -0.41 1.22 16 46 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.07 0.74 7.86 -51.93 -0.41 0.33 16 48 H 0.08 0.81 8.09 -51.93 -0.42 0.39 16 LS Contribution 404.01 15.07 6.09 6.09 Total: -1.00 -36.34 404.01 -9.48 -45.83 By element: Atomic # 1 Polarization: 3.51 SS G_CDS: -8.14 Total: -4.63 kcal Atomic # 6 Polarization: -1.14 SS G_CDS: 0.13 Total: -1.01 kcal Atomic # 7 Polarization: -39.18 SS G_CDS: -0.51 Total: -39.69 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.19 Total: -18.83 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -36.34 -9.48 -45.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001756827021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.406 kcal (2) G-P(sol) polarization free energy of solvation -36.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds