Wall clock time and date at job start Sat Apr 11 2020 06:04:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53007 * 109.47241 * 2 1 4 4 H 1.09004 * 115.55737 * 29.30774 * 3 2 1 5 5 C 1.52998 * 117.50066 * 243.62454 * 3 2 1 6 6 C 1.52995 * 117.50167 * 174.99894 * 3 2 1 7 7 H 1.09001 * 117.49622 * 359.97438 * 6 3 2 8 8 C 1.50705 * 117.50071 * 214.97768 * 6 3 2 9 9 O 1.21281 * 119.99329 * 0.02562 * 8 6 3 10 10 N 1.34773 * 120.00029 * 180.02562 * 8 6 3 11 11 C 1.46500 * 119.99698 * 180.02562 * 10 8 6 12 12 C 1.53001 * 109.46883 * 179.97438 * 11 10 8 13 13 H 1.09005 * 109.47132 * 64.99973 * 12 11 10 14 14 N 1.46498 * 109.47208 * 305.00043 * 12 11 10 15 15 C 1.34782 * 119.99789 * 155.00202 * 14 12 11 16 16 O 1.21279 * 119.99931 * 359.97438 * 15 14 12 17 17 C 1.50697 * 119.99564 * 180.02562 * 15 14 12 18 18 S 1.80996 * 109.46918 * 179.97438 * 17 15 14 19 19 C 1.76207 * 100.00120 * 179.97438 * 18 17 15 20 20 H 1.07995 * 119.99831 * 359.97438 * 19 18 17 21 21 C 1.38799 * 120.00170 * 180.02562 * 19 18 17 22 22 N 1.31623 * 120.00039 * 179.97438 * 21 19 18 23 23 Si 1.86804 * 119.99852 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.47052 * 90.00112 * 23 21 19 25 25 H 1.48496 * 109.46937 * 210.00014 * 23 21 19 26 26 H 1.48493 * 109.47163 * 330.00552 * 23 21 19 27 27 C 1.52999 * 109.47095 * 184.99549 * 12 11 10 28 28 C 1.53002 * 117.49968 * 179.97438 * 27 12 11 29 29 C 1.53000 * 60.02940 * 107.50530 * 28 27 12 30 30 H 1.09006 * 109.47156 * 300.00012 * 1 2 3 31 31 H 1.08997 * 109.47067 * 60.00260 * 1 2 3 32 32 H 1.08998 * 109.47194 * 180.02562 * 1 2 3 33 33 H 1.08993 * 109.47447 * 239.99961 * 2 1 3 34 34 H 1.09006 * 109.47292 * 119.99519 * 2 1 3 35 35 H 1.09000 * 117.49929 * 145.01187 * 5 3 2 36 36 H 1.09002 * 117.49745 * 359.97438 * 5 3 2 37 37 H 0.97002 * 120.00051 * 0.02562 * 10 8 6 38 38 H 1.09002 * 109.47064 * 59.99721 * 11 10 8 39 39 H 1.08997 * 109.47256 * 300.00082 * 11 10 8 40 40 H 0.96996 * 119.99933 * 335.00172 * 14 12 11 41 41 H 1.09003 * 109.47016 * 299.99479 * 17 15 14 42 42 H 1.08999 * 109.47415 * 59.99600 * 17 15 14 43 43 H 0.97005 * 120.00065 * 179.97438 * 22 21 19 44 44 H 1.08999 * 115.55899 * 34.31626 * 27 12 11 45 45 H 1.09002 * 117.49918 * 0.02562 * 28 27 12 46 46 H 1.09002 * 117.49754 * 215.00713 * 28 27 12 47 47 H 1.09008 * 117.49673 * 107.47884 * 29 28 27 48 48 H 1.08999 * 117.49942 * 252.47315 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.3883 2.1718 0.4814 5 6 2.8439 1.9076 -1.2158 6 6 3.5501 1.6580 0.1183 7 1 4.1802 0.7720 0.1966 8 6 4.0228 2.8622 0.8914 9 8 3.2156 3.6165 1.3918 10 7 5.3423 3.1007 1.0267 11 6 5.8018 4.2710 1.7787 12 6 7.3313 4.3075 1.7808 13 1 7.6925 4.4584 0.7635 14 7 7.8494 3.0393 2.2998 15 6 9.0823 2.6215 1.9504 16 8 9.7625 3.2952 1.2058 17 6 9.6149 1.3167 2.4838 18 16 11.2820 1.0361 1.8372 19 6 11.6497 -0.5095 2.5992 20 1 10.9223 -0.9804 3.2437 21 6 12.8747 -1.1213 2.3720 22 7 13.1496 -2.2756 2.9417 23 14 14.1333 -0.3064 1.2578 24 1 15.0073 0.5823 2.0651 25 1 14.9605 -1.3493 0.5997 26 1 13.4326 0.4957 0.2231 27 6 7.8128 5.4568 2.6686 28 6 9.3232 5.6611 2.8025 29 6 8.4886 6.6460 1.9814 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.7211 2.9428 -1.5344 36 1 3.0098 1.1858 -2.0156 37 1 5.9878 2.4975 0.6262 38 1 5.4387 4.2091 2.8047 39 1 5.4169 5.1773 1.3113 40 1 7.3052 2.5004 2.8950 41 1 9.6491 1.3562 3.5726 42 1 8.9620 0.5022 2.1701 43 1 14.0055 -2.7034 2.7826 44 1 7.1975 5.6643 3.5441 45 1 9.9739 4.9769 2.2578 46 1 9.7013 6.0029 3.7660 47 1 8.3173 7.6358 2.4049 48 1 8.5904 6.6099 0.8968 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001758636081.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:07 Heat of formation + Delta-G solvation = -61.377530 kcal Electronic energy + Delta-G solvation = -26695.073294 eV Core-core repulsion = 22876.369282 eV Total energy + Delta-G solvation = -3818.704012 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.41739 -40.77826 -38.55737 -37.95046 -36.25607 -34.68491 -34.60450 -32.93999 -31.59101 -29.63535 -27.83930 -26.04400 -24.67086 -23.61514 -23.18048 -22.31542 -21.60938 -21.36148 -20.90388 -19.87128 -18.45383 -17.98636 -17.53932 -17.10969 -16.90303 -16.79613 -16.31862 -16.07088 -15.77938 -15.52278 -15.33315 -15.08679 -14.94057 -14.79062 -14.53470 -13.93302 -13.57423 -13.51022 -13.36282 -13.31824 -13.06165 -13.01583 -12.98057 -12.79149 -12.53699 -12.27286 -12.19010 -11.92300 -11.86595 -11.36121 -11.29793 -11.19892 -11.16310 -11.05865 -10.87679 -10.77514 -10.51297 -10.18999 -10.10127 -8.96663 -8.50697 -6.20474 1.00035 1.32064 1.43875 1.46992 1.54470 1.57394 1.99030 2.19709 2.25539 2.71313 2.85352 2.87855 2.96899 3.47552 3.60022 3.77730 3.83190 3.85786 3.89597 4.06790 4.15405 4.19060 4.22692 4.26459 4.28720 4.41500 4.48686 4.50014 4.55995 4.62464 4.78297 4.81570 4.83430 4.93762 4.98993 5.04727 5.16375 5.22017 5.24556 5.28691 5.30638 5.34743 5.47043 5.50147 5.71515 6.12812 6.42513 6.45395 6.94747 7.15455 7.20286 8.61730 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009408 B = 0.002636 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.376921 B =10620.158622 C =13027.375155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.093 4.093 3 C -0.120 4.120 4 H 0.097 0.903 5 C -0.138 4.138 6 C -0.199 4.199 7 H 0.142 0.858 8 C 0.543 3.457 9 O -0.581 6.581 10 N -0.718 5.718 11 C 0.126 3.874 12 C 0.175 3.825 13 H 0.084 0.916 14 N -0.708 5.708 15 C 0.543 3.457 16 O -0.547 6.547 17 C -0.114 4.114 18 S -0.168 6.168 19 C -0.528 4.528 20 H 0.061 0.939 21 C 0.044 3.956 22 N -0.918 5.918 23 Si 0.914 3.086 24 H -0.264 1.264 25 H -0.261 1.261 26 H -0.234 1.234 27 C -0.163 4.163 28 C -0.198 4.198 29 C -0.159 4.159 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.092 0.908 36 H 0.125 0.875 37 H 0.412 0.588 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.414 0.586 41 H 0.108 0.892 42 H 0.114 0.886 43 H 0.276 0.724 44 H 0.125 0.875 45 H 0.090 0.910 46 H 0.093 0.907 47 H 0.112 0.888 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.748 11.456 -5.496 26.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.131 4.131 3 C -0.139 4.139 4 H 0.116 0.884 5 C -0.175 4.175 6 C -0.220 4.220 7 H 0.160 0.840 8 C 0.331 3.669 9 O -0.461 6.461 10 N -0.369 5.369 11 C 0.001 3.999 12 C 0.070 3.930 13 H 0.102 0.898 14 N -0.362 5.362 15 C 0.329 3.671 16 O -0.424 6.424 17 C -0.264 4.264 18 S 0.058 5.942 19 C -0.676 4.676 20 H 0.079 0.921 21 C -0.161 4.161 22 N -0.556 5.556 23 Si 0.736 3.264 24 H -0.189 1.189 25 H -0.186 1.186 26 H -0.158 1.158 27 C -0.183 4.183 28 C -0.235 4.235 29 C -0.196 4.196 30 H 0.068 0.932 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.086 0.914 35 H 0.110 0.890 36 H 0.143 0.857 37 H 0.248 0.752 38 H 0.099 0.901 39 H 0.105 0.895 40 H 0.251 0.749 41 H 0.126 0.874 42 H 0.132 0.868 43 H 0.086 0.914 44 H 0.142 0.858 45 H 0.108 0.892 46 H 0.111 0.889 47 H 0.130 0.870 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -22.078 12.962 -6.335 26.374 hybrid contribution 0.341 -1.407 1.090 1.812 sum -21.737 11.554 -5.245 25.170 Atomic orbital electron populations 1.21740 0.94906 1.02186 1.01887 1.21171 0.96522 0.92549 1.02824 1.22458 0.90726 0.99259 1.01414 0.88441 1.23190 1.00658 1.03367 0.90334 1.22384 0.98365 0.98579 1.02698 0.84007 1.20055 0.81946 0.85727 0.79194 1.90681 1.54893 1.50223 1.50332 1.45885 1.07037 1.28585 1.55399 1.21543 0.91214 0.89378 0.97719 1.20683 0.91998 0.82470 0.97836 0.89791 1.45816 1.16027 1.23131 1.51177 1.19800 0.81594 0.85807 0.79888 1.90652 1.58093 1.56810 1.36851 1.23279 0.99321 0.98818 1.05030 1.84661 1.17220 1.27082 1.65227 1.22483 1.05328 1.06159 1.33622 0.92081 1.25575 0.99342 0.94729 0.96473 1.70019 1.24711 1.17025 1.43885 0.85866 0.80115 0.79553 0.80824 1.18900 1.18581 1.15771 1.22623 0.95801 0.97555 1.02294 1.23176 0.93862 1.04118 1.02340 1.22999 1.02849 0.94593 0.99202 0.93182 0.92350 0.91724 0.90382 0.91440 0.88990 0.85683 0.75193 0.90091 0.89537 0.74908 0.87403 0.86754 0.91441 0.85757 0.89163 0.88897 0.86997 0.89117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.87 71.98 0.71 -0.88 16 2 C -0.09 -1.06 6.22 30.59 0.19 -0.87 16 3 C -0.12 -1.75 5.25 -10.79 -0.06 -1.81 16 4 H 0.10 1.83 7.60 -2.38 -0.02 1.81 16 5 C -0.14 -1.73 9.88 30.59 0.30 -1.43 16 6 C -0.20 -2.91 5.91 -11.54 -0.07 -2.98 16 7 H 0.14 1.58 8.14 -2.39 -0.02 1.56 16 8 C 0.54 10.55 7.61 87.66 0.67 11.22 16 9 O -0.58 -15.66 16.26 -3.03 -0.05 -15.71 16 10 N -0.72 -11.16 5.39 -463.06 -2.49 -13.66 16 11 C 0.13 1.91 5.22 86.38 0.45 2.36 16 12 C 0.17 3.09 2.43 44.99 0.11 3.20 16 13 H 0.08 1.79 7.34 -2.38 -0.02 1.77 16 14 N -0.71 -13.84 4.50 -442.53 -1.99 -15.84 16 15 C 0.54 16.05 7.18 87.66 0.63 16.67 16 16 O -0.55 -20.10 12.89 -3.03 -0.04 -20.14 16 17 C -0.11 -3.89 6.16 71.23 0.44 -3.46 16 18 S -0.17 -8.04 18.55 -56.49 -1.05 -9.09 16 19 C -0.53 -29.85 10.04 67.95 0.68 -29.16 16 20 H 0.06 3.65 8.03 -2.91 -0.02 3.63 16 21 C 0.04 2.54 5.50 84.86 0.47 3.00 16 22 N -0.92 -55.17 13.97 21.65 0.30 -54.86 16 23 Si 0.91 44.02 27.74 68.60 1.90 45.92 16 24 H -0.26 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 26 H -0.23 -11.12 6.74 99.48 0.67 -10.45 16 27 C -0.16 -2.91 5.36 -10.77 -0.06 -2.97 16 28 C -0.20 -4.67 9.73 30.60 0.30 -4.38 16 29 C -0.16 -2.92 10.18 30.62 0.31 -2.60 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.08 0.71 7.87 -2.39 -0.02 0.69 16 34 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 36 H 0.13 1.08 8.03 -2.39 -0.02 1.06 16 37 H 0.41 5.60 8.14 -92.71 -0.75 4.84 16 38 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 39 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.41 6.16 8.60 -92.71 -0.80 5.37 16 41 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 42 H 0.11 3.54 8.14 -2.40 -0.02 3.52 16 43 H 0.28 15.37 8.31 -92.70 -0.77 14.60 16 44 H 0.12 1.80 8.11 -2.39 -0.02 1.78 16 45 H 0.09 2.84 5.02 -2.39 -0.01 2.82 16 46 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 47 H 0.11 1.62 8.14 -2.38 -0.02 1.60 16 48 H 0.09 1.75 8.05 -2.39 -0.02 1.73 16 Total: -1.00 -73.28 409.58 1.04 -72.24 By element: Atomic # 1 Polarization: 25.82 SS G_CDS: -0.62 Total: 25.20 kcal Atomic # 6 Polarization: -19.14 SS G_CDS: 5.07 Total: -14.07 kcal Atomic # 7 Polarization: -80.18 SS G_CDS: -4.18 Total: -84.36 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.09 Total: -35.85 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.90 Total: 45.92 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.05 Total: -9.09 kcal Total: -73.28 1.04 -72.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758636081.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.864 kcal (2) G-P(sol) polarization free energy of solvation -73.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds