Wall clock time and date at job start Sat Apr 11 2020 06:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46929 * 2 1 4 4 S 1.81399 * 109.47177 * 119.99953 * 2 1 3 5 5 O 1.42098 * 108.57784 * 70.51163 * 4 2 1 6 6 O 1.42097 * 108.57754 * 299.48664 * 4 2 1 7 7 C 1.81401 * 101.92283 * 185.00322 * 4 2 1 8 8 C 1.53001 * 109.47188 * 180.02562 * 7 4 2 9 9 C 1.52995 * 109.47282 * 179.97438 * 8 7 4 10 10 N 1.46896 * 109.47491 * 179.30071 * 9 8 7 11 11 C 1.46901 * 111.00030 * 287.82084 * 10 9 8 12 12 C 1.50696 * 109.46937 * 298.76469 * 11 10 9 13 13 H 1.07994 * 120.00342 * 4.71519 * 12 11 10 14 14 C 1.37884 * 119.99385 * 184.71741 * 12 11 10 15 15 N 1.31506 * 120.00413 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99399 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47177 * 60.00212 * 16 14 12 18 18 H 1.48504 * 109.46584 * 180.02562 * 16 14 12 19 19 H 1.48498 * 109.47077 * 299.99529 * 16 14 12 20 20 C 1.46893 * 111.00366 * 163.86606 * 10 9 8 21 21 C 1.50705 * 109.47361 * 190.00172 * 20 10 9 22 22 C 1.38223 * 119.61553 * 95.01984 * 21 20 10 23 23 C 1.38635 * 119.15571 * 179.97438 * 22 21 20 24 24 C 1.38663 * 118.42389 * 0.02562 * 23 22 21 25 25 C 1.38180 * 119.16425 * 359.97438 * 24 23 22 26 26 N 1.31853 * 119.61941 * 274.99975 * 21 20 10 27 27 H 1.08996 * 109.47103 * 300.00394 * 1 2 3 28 28 H 1.09010 * 109.47063 * 59.99552 * 1 2 3 29 29 H 1.08996 * 109.47055 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47484 * 239.99918 * 2 1 3 31 31 H 1.08999 * 109.47436 * 60.00390 * 3 2 1 32 32 H 1.09007 * 109.46974 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.47347 * 299.99677 * 3 2 1 34 34 H 1.09001 * 109.47323 * 59.99545 * 7 4 2 35 35 H 1.09001 * 109.46970 * 299.99966 * 7 4 2 36 36 H 1.08999 * 109.47123 * 59.99378 * 8 7 4 37 37 H 1.09001 * 109.46857 * 299.99692 * 8 7 4 38 38 H 1.09008 * 109.47036 * 59.29945 * 9 8 7 39 39 H 1.09004 * 109.47117 * 299.30073 * 9 8 7 40 40 H 1.09004 * 109.46850 * 58.76171 * 11 10 9 41 41 H 1.09004 * 109.47133 * 178.76092 * 11 10 9 42 42 H 0.97001 * 120.00403 * 180.02562 * 15 14 12 43 43 H 1.09001 * 109.47022 * 70.00275 * 20 10 9 44 44 H 1.09006 * 109.47378 * 310.00360 * 20 10 9 45 45 H 1.08003 * 120.42285 * 359.96138 * 22 21 20 46 46 H 1.08007 * 120.78252 * 180.02562 * 23 22 21 47 47 H 1.08005 * 120.42007 * 179.97438 * 24 23 22 48 48 H 1.08003 * 119.62279 * 180.27252 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 16 2.1346 -0.8551 1.4811 5 8 1.8619 -2.2431 1.3456 6 8 1.6605 -0.1636 2.6284 7 6 3.9266 -0.6030 1.3541 8 6 4.6210 -1.2700 2.5431 9 6 6.1324 -1.0580 2.4357 10 7 6.7977 -1.6839 3.5860 11 6 6.5548 -0.9178 4.8157 12 6 7.1173 0.4716 4.6612 13 1 7.5380 0.7819 3.7162 14 6 7.0947 1.3468 5.7265 15 7 6.5829 0.9688 6.8773 16 14 7.7926 3.0690 5.5352 17 1 7.0536 3.7866 4.4656 18 1 7.6497 3.8060 6.8165 19 1 9.2299 2.9830 5.1718 20 6 8.2373 -1.8417 3.3398 21 6 8.8410 -2.6995 4.4219 22 6 8.9900 -4.0578 4.2132 23 6 9.5469 -4.8379 5.2149 24 6 9.9344 -4.2200 6.3942 25 6 9.7543 -2.8568 6.5309 26 7 9.2212 -2.1457 5.5564 27 1 -0.3633 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.6767 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6767 1.9564 -0.8900 34 1 4.1444 0.4650 1.3579 35 1 4.2907 -1.0448 0.4265 36 1 4.4030 -2.3380 2.5389 37 1 4.2569 -0.8286 3.4709 38 1 6.3497 0.0102 2.4272 39 1 6.4981 -1.5105 1.5139 40 1 5.4822 -0.8572 5.0000 41 1 7.0402 -1.4151 5.6555 42 1 6.5667 1.5846 7.6266 43 1 8.7159 -0.8624 3.3432 44 1 8.3903 -2.3175 2.3711 45 1 8.6763 -4.5057 3.2819 46 1 9.6760 -5.9016 5.0797 47 1 10.3714 -4.7969 7.1959 48 1 10.0575 -2.3672 7.4446 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000121527228.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:22 Heat of formation + Delta-G solvation = -34.433191 kcal Electronic energy + Delta-G solvation = -27879.671642 eV Core-core repulsion = 24062.136025 eV Total energy + Delta-G solvation = -3817.535617 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.70255 -37.11542 -36.91349 -35.94232 -35.25192 -33.57686 -32.40856 -31.88944 -30.88525 -27.89368 -27.10817 -26.50985 -24.23521 -23.10428 -22.92446 -22.35584 -20.98362 -19.65316 -18.64722 -17.11264 -16.54644 -16.23253 -16.13832 -15.86469 -15.63128 -15.32194 -14.95648 -14.73164 -14.55346 -14.28030 -13.61116 -13.57226 -13.37911 -13.20215 -12.92080 -12.75431 -12.60185 -12.27190 -12.06335 -11.98212 -11.89375 -11.86422 -11.76331 -11.66091 -11.60248 -11.20237 -11.00068 -10.88347 -10.74721 -10.58425 -10.31172 -10.19064 -9.94766 -9.90461 -9.55294 -9.32902 -8.68366 -8.52830 -8.25555 -7.19377 -5.88427 -3.94046 0.00697 1.59303 1.78346 2.79025 3.35144 3.40588 3.41855 3.63479 3.95493 4.25077 4.33152 4.42805 4.51378 4.72496 4.82004 4.90953 4.96072 5.13844 5.19555 5.26096 5.28144 5.32351 5.38986 5.43800 5.47862 5.49622 5.53517 5.59426 5.71049 5.72514 5.78884 5.92358 6.01400 6.13802 6.16876 6.19662 6.44620 6.54812 6.57330 6.67992 6.76827 7.17579 7.31407 7.67106 8.00381 8.07367 8.29664 8.39367 8.69479 9.10910 9.69770 11.18396 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.010556 B = 0.003392 C = 0.002764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2651.850900 B = 8253.703310 C =10127.052142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.581 4.581 3 C -0.148 4.148 4 S 2.413 3.587 5 O -0.943 6.943 6 O -0.930 6.930 7 C -0.601 4.601 8 C -0.103 4.103 9 C 0.069 3.931 10 N -0.540 5.540 11 C 0.181 3.819 12 C -0.535 4.535 13 H 0.052 0.948 14 C 0.072 3.928 15 N -0.887 5.887 16 Si 0.883 3.117 17 H -0.280 1.280 18 H -0.288 1.288 19 H -0.279 1.279 20 C 0.106 3.894 21 C 0.155 3.845 22 C -0.166 4.166 23 C -0.086 4.086 24 C -0.189 4.189 25 C 0.100 3.900 26 N -0.442 5.442 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.070 0.930 30 H 0.133 0.867 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.135 0.865 35 H 0.128 0.872 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.025 0.975 41 H 0.050 0.950 42 H 0.260 0.740 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.128 0.872 46 H 0.125 0.875 47 H 0.125 0.875 48 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.005 -5.813 -13.652 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.689 4.689 3 C -0.206 4.206 4 S 2.595 3.405 5 O -0.940 6.940 6 O -0.927 6.927 7 C -0.732 4.732 8 C -0.141 4.141 9 C -0.061 4.061 10 N -0.264 5.264 11 C 0.056 3.944 12 C -0.574 4.574 13 H 0.070 0.930 14 C -0.131 4.131 15 N -0.525 5.525 16 Si 0.711 3.289 17 H -0.206 1.206 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.023 4.023 21 C 0.017 3.983 22 C -0.186 4.186 23 C -0.112 4.112 24 C -0.209 4.209 25 C -0.058 4.058 26 N -0.150 5.150 27 H 0.094 0.906 28 H 0.096 0.904 29 H 0.089 0.911 30 H 0.151 0.849 31 H 0.097 0.903 32 H 0.092 0.908 33 H 0.094 0.906 34 H 0.153 0.847 35 H 0.146 0.854 36 H 0.095 0.905 37 H 0.107 0.893 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.043 0.957 41 H 0.068 0.932 42 H 0.070 0.930 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.146 0.854 46 H 0.143 0.857 47 H 0.143 0.857 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.876 -5.758 -12.655 14.433 hybrid contribution 1.313 1.309 -0.840 2.035 sum -2.563 -4.449 -13.495 14.438 Atomic orbital electron populations 1.21614 0.90176 1.03645 1.04540 1.30108 1.06965 1.09946 1.21913 1.21764 1.01896 0.92102 1.04810 1.08409 0.78872 0.75914 0.77276 1.93561 1.83779 1.30019 1.86609 1.93598 1.78771 1.75344 1.44984 1.30273 1.23163 1.11252 1.08488 1.21256 0.97186 1.00521 0.95186 1.21842 0.91933 0.99179 0.93109 1.62552 1.07594 1.51253 1.04971 1.19913 0.96730 0.91001 0.86774 1.21444 1.40153 0.98655 0.97183 0.93009 1.24826 0.95096 0.97950 0.95195 1.69920 1.45143 1.35593 1.01882 0.86825 0.79632 0.85260 0.77187 1.20594 1.21379 1.20431 1.20817 0.90249 0.98273 0.92959 1.21234 0.92862 0.91309 0.92941 1.21914 1.01428 0.94830 1.00467 1.21428 0.96661 0.99699 0.93423 1.22043 1.03594 0.96695 0.98601 1.22805 0.94481 0.90874 0.97671 1.67785 1.07385 1.39948 0.99924 0.90638 0.90367 0.91121 0.84857 0.90303 0.90801 0.90555 0.84710 0.85409 0.90451 0.89336 0.92704 0.92828 0.95662 0.93189 0.93032 0.91743 0.91584 0.85427 0.85706 0.85700 0.83432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.19 37.16 0.34 -0.84 16 2 C -0.58 -4.95 3.35 -26.73 -0.09 -5.04 16 3 C -0.15 -1.15 8.90 37.16 0.33 -0.82 16 4 S 2.41 30.78 4.26 -107.50 -0.46 30.33 16 5 O -0.94 -14.74 18.10 -57.83 -1.05 -15.79 16 6 O -0.93 -15.69 18.06 -57.83 -1.04 -16.73 16 7 C -0.60 -7.13 5.20 37.16 0.19 -6.93 16 8 C -0.10 -1.71 5.28 -26.73 -0.14 -1.85 16 9 C 0.07 1.23 4.80 -3.83 -0.02 1.21 16 10 N -0.54 -11.21 4.66 -237.52 -1.11 -12.32 16 11 C 0.18 4.64 4.71 -4.98 -0.02 4.61 16 12 C -0.54 -14.45 7.33 -34.44 -0.25 -14.70 16 13 H 0.05 1.37 5.95 -52.49 -0.31 1.05 16 14 C 0.07 2.03 5.46 -17.82 -0.10 1.93 16 15 N -0.89 -26.42 13.29 55.43 0.74 -25.69 16 16 Si 0.88 21.66 29.54 -169.99 -5.02 16.64 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 19 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.11 2.02 5.09 -4.98 -0.03 1.99 16 21 C 0.15 2.96 5.70 -82.59 -0.47 2.49 16 22 C -0.17 -2.60 9.72 -39.44 -0.38 -2.98 16 23 C -0.09 -1.19 10.18 -39.28 -0.40 -1.59 16 24 C -0.19 -2.71 10.11 -39.45 -0.40 -3.11 16 25 C 0.10 1.75 11.18 -17.55 -0.20 1.55 16 26 N -0.44 -9.32 8.78 -9.47 -0.08 -9.41 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.50 8.14 -51.92 -0.42 0.07 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.13 0.80 8.14 -51.92 -0.42 0.38 16 31 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.48 6.39 -51.93 -0.33 0.15 16 33 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.13 1.41 6.77 -51.92 -0.35 1.06 16 35 H 0.13 1.07 8.14 -51.92 -0.42 0.65 16 36 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 37 H 0.09 1.72 6.73 -51.93 -0.35 1.37 16 38 H 0.05 1.06 6.17 -51.92 -0.32 0.74 16 39 H 0.05 0.79 7.81 -51.93 -0.41 0.38 16 40 H 0.03 0.70 6.66 -51.93 -0.35 0.36 16 41 H 0.05 1.41 6.19 -51.93 -0.32 1.09 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 43 H 0.06 1.38 6.57 -51.93 -0.34 1.04 16 44 H 0.07 1.03 7.76 -51.93 -0.40 0.63 16 45 H 0.13 1.68 8.06 -52.48 -0.42 1.26 16 46 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 47 H 0.13 1.39 8.06 -52.48 -0.42 0.96 16 48 H 0.15 2.33 8.06 -52.48 -0.42 1.90 16 LS Contribution 396.87 15.07 5.98 5.98 Total: -1.00 -36.51 396.87 -11.36 -47.88 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: -7.69 Total: 3.19 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: -1.63 Total: -24.08 kcal Atomic # 7 Polarization: -46.96 SS G_CDS: -0.45 Total: -47.41 kcal Atomic # 8 Polarization: -30.43 SS G_CDS: -2.09 Total: -32.52 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 30.78 SS G_CDS: -0.46 Total: 30.33 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.51 -11.36 -47.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000121527228.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.443 kcal (2) G-P(sol) polarization free energy of solvation -36.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.876 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds