Wall clock time and date at job start Sat Apr 11 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47021 * 36.06802 * 3 2 1 5 5 C 1.42897 * 113.99351 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47004 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.46846 * 64.99910 * 6 5 4 8 8 C 1.34784 * 119.99401 * 180.02562 * 7 6 5 9 9 O 1.21666 * 120.00206 * 359.97438 * 8 7 6 10 10 C 1.46915 * 119.99525 * 180.02562 * 8 7 6 11 11 C 1.36374 * 126.76930 * 359.97438 * 10 8 7 12 12 N 1.35474 * 109.77040 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.78618 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02448 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.37963 * 110.42294 * 0.26591 * 12 11 10 24 24 C 1.39128 * 133.18358 * 180.48334 * 23 12 11 25 25 C 1.37764 * 119.92592 * 179.56790 * 24 23 12 26 26 C 1.38754 * 120.63813 * 359.70715 * 25 24 23 27 27 C 1.37750 * 120.30079 * 0.02562 * 26 25 24 28 28 C 1.39276 * 119.67080 * 0.02562 * 27 26 25 29 29 H 4.38447 * 5.44375 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.46531 * 276.07109 * 3 2 1 31 31 H 1.08994 * 109.46759 * 156.07545 * 3 2 1 32 32 H 1.09007 * 109.47321 * 60.00668 * 5 4 3 33 33 H 1.08999 * 109.47712 * 300.00185 * 5 4 3 34 34 H 1.09004 * 109.46966 * 305.00206 * 6 5 4 35 35 H 1.08996 * 109.47750 * 185.00534 * 6 5 4 36 36 H 0.96994 * 120.00159 * 0.02562 * 7 6 5 37 37 H 1.07999 * 125.11454 * 359.95838 * 11 10 8 38 38 H 1.09004 * 109.46794 * 145.02547 * 13 12 11 39 39 H 1.09000 * 109.47559 * 25.03023 * 13 12 11 40 40 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 41 41 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 42 42 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.03221 * 359.27757 * 24 23 12 44 44 H 1.08007 * 119.67954 * 179.69314 * 25 24 23 45 45 H 1.08001 * 119.85044 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.16629 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.0882 -0.7932 5 6 4.5474 -1.1783 -0.8600 6 6 4.9426 -2.3727 -1.7308 7 7 4.5039 -2.1386 -3.1089 8 6 4.7451 -3.0636 -4.0591 9 8 5.3274 -4.0927 -3.7725 10 6 4.3057 -2.8286 -5.4411 11 6 3.6469 -1.7317 -5.9130 12 7 3.4102 -1.8746 -7.2392 13 6 2.7217 -0.8891 -8.0763 14 6 1.2384 -1.2509 -8.1748 15 6 0.5302 -0.2374 -9.0364 16 1 1.0829 0.5826 -9.4707 17 6 -0.8222 -0.3605 -9.2755 18 7 -1.4951 -1.3592 -8.7470 19 14 -1.6984 0.8915 -10.3497 20 1 -1.6599 0.4428 -11.7648 21 1 -3.1108 1.0194 -9.9093 22 1 -1.0212 2.2076 -10.2292 23 6 3.9034 -3.0820 -7.6889 24 6 3.9272 -3.6952 -8.9376 25 6 4.5131 -4.9334 -9.0842 26 6 5.0878 -5.5768 -7.9975 27 6 5.0792 -4.9837 -6.7543 28 6 4.4894 -3.7325 -6.5914 29 1 -1.0498 -0.0004 0.0000 30 1 3.0094 -0.1079 1.0219 31 1 3.0089 0.9402 -0.4167 32 1 4.9507 -1.3111 0.1440 33 1 4.9495 -0.2632 -1.2949 34 1 4.4675 -3.2754 -1.3467 35 1 6.0255 -2.4951 -1.7100 36 1 4.0400 -1.3180 -3.3374 37 1 3.3571 -0.8778 -5.3187 38 1 3.1624 -0.8879 -9.0732 39 1 2.8254 0.1009 -7.6321 40 1 0.7976 -1.2521 -7.1779 41 1 1.1346 -2.2408 -8.6191 42 1 -2.4466 -1.4456 -8.9149 43 1 3.4827 -3.2030 -9.7899 44 1 4.5249 -5.4079 -10.0543 45 1 5.5433 -6.5475 -8.1268 46 1 5.5269 -5.4866 -5.9098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000767991031.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:30 Heat of formation + Delta-G solvation = 25.180625 kcal Electronic energy + Delta-G solvation = -27983.193487 eV Core-core repulsion = 24032.798968 eV Total energy + Delta-G solvation = -3950.394520 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.18013 -39.23648 -38.26958 -36.84047 -34.80851 -34.05594 -33.32901 -32.36954 -30.45493 -30.11635 -28.82250 -28.22672 -26.94183 -25.17857 -23.36425 -22.59470 -22.03689 -21.51001 -20.35032 -19.52817 -18.71212 -17.44198 -17.15794 -16.77040 -16.57510 -16.20205 -15.48359 -15.33856 -15.12306 -15.05847 -14.80376 -14.69222 -14.14886 -13.87876 -13.57016 -13.41081 -13.05694 -12.88460 -12.71840 -12.60762 -12.41914 -12.30155 -11.78879 -11.77118 -11.37027 -11.18903 -11.08766 -10.82313 -10.76868 -10.70544 -10.60398 -10.29105 -9.94490 -9.91451 -9.64553 -9.43756 -9.19789 -8.99866 -8.55251 -7.90909 -7.30034 -6.18741 -4.25392 1.32385 1.90497 2.23113 2.36560 2.57161 3.13390 3.20770 3.28048 3.29661 3.34107 3.58569 3.72907 4.21776 4.30173 4.31565 4.64472 4.79014 4.84823 4.90351 4.97649 5.03421 5.05861 5.11432 5.17448 5.36225 5.42588 5.49912 5.56005 5.67629 5.72641 5.78916 5.89169 5.99449 6.04247 6.06051 6.37115 6.39675 6.48053 6.73555 6.76244 6.92129 7.00173 7.06632 7.33825 7.34485 7.39270 7.54993 7.57213 7.69551 7.79086 8.10924 8.50921 8.80363 9.40544 10.91998 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006335 B = 0.003555 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4419.064820 B = 7873.351261 C =11726.649241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.202 4.202 3 C 0.175 3.825 4 O -0.378 6.378 5 C 0.049 3.951 6 C 0.127 3.873 7 N -0.731 5.731 8 C 0.599 3.401 9 O -0.552 6.552 10 C -0.255 4.255 11 C 0.124 3.876 12 N -0.450 5.450 13 C 0.101 3.899 14 C 0.012 3.988 15 C -0.532 4.532 16 H 0.059 0.941 17 C 0.063 3.937 18 N -0.887 5.887 19 Si 0.897 3.103 20 H -0.279 1.279 21 H -0.285 1.285 22 H -0.273 1.273 23 C 0.092 3.908 24 C -0.113 4.113 25 C -0.110 4.110 26 C -0.146 4.146 27 C -0.073 4.073 28 C -0.062 4.062 29 H 0.222 0.778 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.401 0.599 37 H 0.170 0.830 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.023 0.977 41 H 0.025 0.975 42 H 0.264 0.736 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.119 0.881 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.418 1.812 13.764 18.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.202 4.202 3 C 0.099 3.901 4 O -0.297 6.297 5 C -0.028 4.028 6 C 0.003 3.997 7 N -0.384 5.384 8 C 0.389 3.611 9 O -0.431 6.431 10 C -0.267 4.267 11 C -0.012 4.012 12 N -0.127 5.127 13 C -0.018 4.018 14 C -0.026 4.026 15 C -0.570 4.570 16 H 0.077 0.923 17 C -0.140 4.140 18 N -0.525 5.525 19 Si 0.724 3.276 20 H -0.205 1.205 21 H -0.211 1.211 22 H -0.197 1.197 23 C -0.013 4.013 24 C -0.133 4.133 25 C -0.130 4.130 26 C -0.165 4.165 27 C -0.091 4.091 28 C -0.066 4.066 29 H 0.239 0.761 30 H 0.091 0.909 31 H 0.093 0.907 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.235 0.765 37 H 0.187 0.813 38 H 0.098 0.902 39 H 0.101 0.899 40 H 0.042 0.958 41 H 0.044 0.956 42 H 0.074 0.926 43 H 0.141 0.859 44 H 0.140 0.860 45 H 0.137 0.863 46 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 12.386 1.111 13.683 18.490 hybrid contribution -1.118 1.362 -0.527 1.840 sum 11.267 2.473 13.156 17.497 Atomic orbital electron populations 1.25055 0.96006 0.98102 0.99024 1.22464 0.93895 1.02133 1.01744 1.19048 0.84930 0.90528 0.95556 1.88053 1.21022 1.49530 1.71139 1.22845 0.81310 0.98709 0.99890 1.21288 0.99909 0.97524 0.81006 1.45719 1.61628 1.22686 1.08390 1.17217 0.77821 0.82497 0.83565 1.90723 1.42960 1.26958 1.82487 1.19733 1.15737 0.98124 0.93058 1.22048 0.96100 0.98599 0.84414 1.44365 1.45070 1.15603 1.07692 1.22462 0.96414 0.89370 0.93557 1.19458 0.86774 0.98075 0.98299 1.20979 0.93702 1.10902 1.31450 0.92274 1.25001 0.97551 0.95645 0.95816 1.69973 1.08666 1.30141 1.43674 0.86521 0.78955 0.81491 0.80626 1.20465 1.21052 1.19739 1.18271 1.00480 0.87319 0.95233 1.20140 1.02521 0.96123 0.94513 1.20746 0.99047 0.94403 0.98778 1.20875 1.02721 1.00229 0.92706 1.20553 0.98106 0.93208 0.97263 1.18688 1.01640 0.95131 0.91126 0.76113 0.90889 0.90736 0.91286 0.92111 0.90602 0.89834 0.76510 0.81283 0.90167 0.89906 0.95830 0.95637 0.92628 0.85865 0.86014 0.86322 0.85513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 19.25 29.55 0.57 -1.07 16 2 C -0.20 -2.16 13.73 -37.12 -0.51 -2.67 16 3 C 0.17 1.42 6.41 34.37 0.22 1.64 16 4 O -0.38 -3.83 10.25 -35.23 -0.36 -4.19 16 5 C 0.05 0.35 6.07 37.16 0.23 0.58 16 6 C 0.13 1.25 6.06 -4.04 -0.02 1.23 16 7 N -0.73 -8.93 5.49 -61.54 -0.34 -9.27 16 8 C 0.60 9.70 7.80 -12.74 -0.10 9.60 16 9 O -0.55 -10.46 16.16 5.22 0.08 -10.38 16 10 C -0.26 -4.36 6.27 -103.31 -0.65 -5.00 16 11 C 0.12 1.96 10.75 -16.62 -0.18 1.78 16 12 N -0.45 -8.05 2.74 -114.22 -0.31 -8.37 16 13 C 0.10 1.89 5.89 -4.05 -0.02 1.87 16 14 C 0.01 0.28 5.30 -27.88 -0.15 0.13 16 15 C -0.53 -13.92 9.11 -34.44 -0.31 -14.24 16 16 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16 17 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 18 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 19 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 20 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 23 C 0.09 1.70 6.79 -83.96 -0.57 1.13 16 24 C -0.11 -1.93 9.97 -39.42 -0.39 -2.33 16 25 C -0.11 -1.66 10.01 -39.56 -0.40 -2.05 16 26 C -0.15 -2.18 10.03 -39.57 -0.40 -2.58 16 27 C -0.07 -1.24 9.85 -39.37 -0.39 -1.62 16 28 C -0.06 -1.13 6.27 -104.95 -0.66 -1.79 16 29 H 0.22 1.48 7.80 -54.10 -0.42 1.06 16 30 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.40 4.19 7.35 -40.82 -0.30 3.89 16 37 H 0.17 2.04 7.38 -52.49 -0.39 1.65 16 38 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 39 H 0.08 1.38 8.11 -51.93 -0.42 0.96 16 40 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 43 H 0.12 2.04 8.06 -52.49 -0.42 1.61 16 44 H 0.12 1.48 8.06 -52.48 -0.42 1.06 16 45 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 46 H 0.13 2.12 7.45 -52.48 -0.39 1.73 16 LS Contribution 405.39 15.07 6.11 6.11 Total: -1.00 -34.54 405.39 -9.47 -44.01 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -6.54 Total: 5.32 kcal Atomic # 6 Polarization: -9.96 SS G_CDS: -3.83 Total: -13.78 kcal Atomic # 7 Polarization: -42.70 SS G_CDS: 0.09 Total: -42.62 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.28 Total: -14.57 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.54 -9.47 -44.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767991031.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.190 kcal (2) G-P(sol) polarization free energy of solvation -34.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds