Wall clock time and date at job start Sat Apr 11 2020 06:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.47209 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47021 * 36.06802 * 3 2 1 5 5 C 1.42897 * 113.99351 * 179.97438 * 4 3 2 6 6 C 1.53003 * 109.47004 * 180.02562 * 5 4 3 7 7 N 1.46501 * 109.46846 * 64.99910 * 6 5 4 8 8 C 1.34784 * 119.99401 * 180.02562 * 7 6 5 9 9 O 1.21666 * 120.00206 * 359.97438 * 8 7 6 10 10 C 1.46915 * 119.99525 * 180.02562 * 8 7 6 11 11 C 1.36374 * 126.76930 * 359.97438 * 10 8 7 12 12 N 1.35474 * 109.77040 * 179.97438 * 11 10 8 13 13 C 1.46493 * 124.78618 * 179.97438 * 12 11 10 14 14 C 1.52996 * 109.47400 * 265.02448 * 13 12 11 15 15 C 1.50702 * 109.47159 * 180.02562 * 14 13 12 16 16 H 1.08002 * 120.00299 * 0.02562 * 15 14 13 17 17 C 1.37884 * 119.99942 * 179.72211 * 15 14 13 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 14 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 14 20 20 H 1.48501 * 109.47188 * 90.00793 * 19 17 15 21 21 H 1.48501 * 109.47085 * 210.00372 * 19 17 15 22 22 H 1.48498 * 109.47634 * 330.00608 * 19 17 15 23 23 C 1.37963 * 110.42294 * 0.26591 * 12 11 10 24 24 C 1.39128 * 133.18358 * 180.48334 * 23 12 11 25 25 C 1.37764 * 119.92592 * 179.56790 * 24 23 12 26 26 C 1.38754 * 120.63813 * 359.70715 * 25 24 23 27 27 C 1.37750 * 120.30079 * 0.02562 * 26 25 24 28 28 C 1.39276 * 119.67080 * 0.02562 * 27 26 25 29 29 H 4.38447 * 5.44375 * 179.97438 * 4 1 2 30 30 H 1.08999 * 109.46531 * 276.07109 * 3 2 1 31 31 H 1.08994 * 109.46759 * 156.07545 * 3 2 1 32 32 H 1.09007 * 109.47321 * 60.00668 * 5 4 3 33 33 H 1.08999 * 109.47712 * 300.00185 * 5 4 3 34 34 H 1.09004 * 109.46966 * 305.00206 * 6 5 4 35 35 H 1.08996 * 109.47750 * 185.00534 * 6 5 4 36 36 H 0.96994 * 120.00159 * 0.02562 * 7 6 5 37 37 H 1.07999 * 125.11454 * 359.95838 * 11 10 8 38 38 H 1.09004 * 109.46794 * 145.02547 * 13 12 11 39 39 H 1.09000 * 109.47559 * 25.03023 * 13 12 11 40 40 H 1.09004 * 109.47066 * 60.00265 * 14 13 12 41 41 H 1.08994 * 109.47405 * 300.00096 * 14 13 12 42 42 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 43 43 H 1.07996 * 120.03221 * 359.27757 * 24 23 12 44 44 H 1.08007 * 119.67954 * 179.69314 * 25 24 23 45 45 H 1.08001 * 119.85044 * 179.97438 * 26 25 24 46 46 H 1.08003 * 120.16629 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 8 3.1229 -1.0882 -0.7932 5 6 4.5474 -1.1783 -0.8600 6 6 4.9426 -2.3727 -1.7308 7 7 4.5039 -2.1386 -3.1089 8 6 4.7451 -3.0636 -4.0591 9 8 5.3274 -4.0927 -3.7725 10 6 4.3057 -2.8286 -5.4411 11 6 3.6469 -1.7317 -5.9130 12 7 3.4102 -1.8746 -7.2392 13 6 2.7217 -0.8891 -8.0763 14 6 1.2384 -1.2509 -8.1748 15 6 0.5302 -0.2374 -9.0364 16 1 1.0829 0.5826 -9.4707 17 6 -0.8222 -0.3605 -9.2755 18 7 -1.4951 -1.3592 -8.7470 19 14 -1.6984 0.8915 -10.3497 20 1 -1.6599 0.4428 -11.7648 21 1 -3.1108 1.0194 -9.9093 22 1 -1.0212 2.2076 -10.2292 23 6 3.9034 -3.0820 -7.6889 24 6 3.9272 -3.6952 -8.9376 25 6 4.5131 -4.9334 -9.0842 26 6 5.0878 -5.5768 -7.9975 27 6 5.0792 -4.9837 -6.7543 28 6 4.4894 -3.7325 -6.5914 29 1 -1.0498 -0.0004 0.0000 30 1 3.0094 -0.1079 1.0219 31 1 3.0089 0.9402 -0.4167 32 1 4.9507 -1.3111 0.1440 33 1 4.9495 -0.2632 -1.2949 34 1 4.4675 -3.2754 -1.3467 35 1 6.0255 -2.4951 -1.7100 36 1 4.0400 -1.3180 -3.3374 37 1 3.3571 -0.8778 -5.3187 38 1 3.1624 -0.8879 -9.0732 39 1 2.8254 0.1009 -7.6321 40 1 0.7976 -1.2521 -7.1779 41 1 1.1346 -2.2408 -8.6191 42 1 -2.4466 -1.4456 -8.9149 43 1 3.4827 -3.2030 -9.7899 44 1 4.5249 -5.4079 -10.0543 45 1 5.5433 -6.5475 -8.1268 46 1 5.5269 -5.4866 -5.9098 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000767991031.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:29 Heat of formation + Delta-G solvation = 4.605680 kcal Electronic energy + Delta-G solvation = -27984.085684 eV Core-core repulsion = 24032.798968 eV Total energy + Delta-G solvation = -3951.286716 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.48394 -40.32212 -39.05370 -38.13914 -35.85584 -35.79331 -34.16943 -33.96822 -31.93724 -31.07867 -30.26805 -29.42294 -27.66686 -26.84386 -24.47272 -23.95802 -23.38386 -22.69279 -21.75137 -20.75549 -19.41162 -18.85469 -18.36013 -17.90540 -17.66840 -17.13596 -16.69963 -16.63422 -16.47983 -16.18914 -16.13224 -15.70309 -15.49098 -15.19952 -14.94620 -14.44463 -14.41260 -14.26040 -14.07592 -13.64252 -13.53961 -13.40133 -13.25606 -12.90666 -12.81853 -12.58338 -12.44780 -12.35734 -12.05277 -11.91534 -11.66017 -11.53737 -11.49072 -11.40920 -10.95308 -10.64071 -10.56520 -10.50426 -10.06641 -9.20617 -8.62815 -8.25137 -6.39311 0.04844 0.62273 1.06272 1.41576 1.41984 1.51503 1.53068 1.82203 1.82771 2.29493 2.39303 2.46040 2.94803 3.01640 3.09557 3.58520 3.69539 3.71934 3.84215 4.01606 4.13995 4.24577 4.25219 4.30698 4.34163 4.43760 4.48070 4.50206 4.55875 4.64027 4.68693 4.69475 4.76223 4.82103 4.93778 5.04240 5.13564 5.35357 5.37207 5.48459 5.53041 5.65022 5.69688 5.71607 5.84798 6.02733 6.16718 6.24015 6.28257 6.60803 6.61805 6.77469 7.31990 7.32680 8.86279 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.006335 B = 0.003555 C = 0.002387 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4419.064820 B = 7873.351261 C =11726.649241 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.232 4.232 3 C 0.170 3.830 4 O -0.409 6.409 5 C 0.055 3.945 6 C 0.121 3.879 7 N -0.716 5.716 8 C 0.596 3.404 9 O -0.588 6.588 10 C -0.272 4.272 11 C 0.130 3.870 12 N -0.460 5.460 13 C 0.118 3.882 14 C 0.021 3.979 15 C -0.541 4.541 16 H 0.075 0.925 17 C 0.004 3.996 18 N -0.932 5.932 19 Si 0.967 3.033 20 H -0.274 1.274 21 H -0.287 1.287 22 H -0.256 1.256 23 C 0.067 3.933 24 C -0.132 4.132 25 C -0.105 4.105 26 C -0.138 4.138 27 C -0.091 4.091 28 C -0.088 4.088 29 H 0.243 0.757 30 H 0.097 0.903 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.056 0.944 35 H 0.095 0.905 36 H 0.410 0.590 37 H 0.205 0.795 38 H 0.088 0.912 39 H 0.110 0.890 40 H -0.006 1.006 41 H -0.012 1.012 42 H 0.264 0.736 43 H 0.122 0.878 44 H 0.155 0.845 45 H 0.152 0.848 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.426 3.531 13.682 19.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.232 4.232 3 C 0.095 3.905 4 O -0.330 6.330 5 C -0.021 4.021 6 C -0.002 4.002 7 N -0.368 5.368 8 C 0.386 3.614 9 O -0.470 6.470 10 C -0.283 4.283 11 C -0.005 4.005 12 N -0.138 5.138 13 C -0.001 4.001 14 C -0.017 4.017 15 C -0.580 4.580 16 H 0.093 0.907 17 C -0.195 4.195 18 N -0.572 5.572 19 Si 0.792 3.208 20 H -0.200 1.200 21 H -0.212 1.212 22 H -0.180 1.180 23 C -0.038 4.038 24 C -0.153 4.153 25 C -0.124 4.124 26 C -0.156 4.156 27 C -0.109 4.109 28 C -0.092 4.092 29 H 0.259 0.741 30 H 0.114 0.886 31 H 0.113 0.887 32 H 0.115 0.885 33 H 0.102 0.898 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.246 0.754 37 H 0.222 0.778 38 H 0.107 0.893 39 H 0.128 0.872 40 H 0.013 0.987 41 H 0.006 0.994 42 H 0.073 0.927 43 H 0.140 0.860 44 H 0.172 0.828 45 H 0.170 0.830 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.414 2.868 13.626 19.334 hybrid contribution -1.412 0.739 -0.464 1.660 sum 12.001 3.607 13.162 18.174 Atomic orbital electron populations 1.25824 0.97108 0.97888 0.98900 1.23358 0.95369 1.02447 1.02025 1.19323 0.83581 0.90808 0.96787 1.87994 1.22600 1.50559 1.71858 1.22916 0.80232 0.98128 1.00846 1.21486 1.00411 0.98361 0.79908 1.45661 1.60427 1.21996 1.08734 1.17217 0.77651 0.82669 0.83892 1.90693 1.44806 1.28505 1.82999 1.19964 1.16350 0.98457 0.93494 1.22572 0.94867 0.99241 0.83795 1.44314 1.45593 1.15538 1.08358 1.22142 0.92693 0.90517 0.94782 1.19250 0.90575 0.95942 0.95921 1.21470 0.94117 1.11333 1.31053 0.90680 1.25972 0.98691 0.97566 0.97232 1.70127 1.08929 1.32450 1.45665 0.85406 0.77438 0.79434 0.78543 1.19979 1.21241 1.17966 1.18592 1.01346 0.87901 0.95929 1.20388 1.03433 0.97256 0.94190 1.21147 0.97475 0.93474 1.00274 1.21261 1.01507 1.01186 0.91666 1.20718 0.98768 0.93207 0.98223 1.19076 1.02320 0.96016 0.91823 0.74095 0.88576 0.88693 0.88487 0.89835 0.92555 0.88748 0.75376 0.77783 0.89346 0.87226 0.98718 0.99360 0.92743 0.85974 0.82768 0.82992 0.85924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.52 19.25 74.32 1.43 -2.09 16 2 C -0.23 -4.80 13.73 31.13 0.43 -4.37 16 3 C 0.17 2.44 6.41 70.18 0.45 2.89 16 4 O -0.41 -7.65 10.25 -148.98 -1.53 -9.18 16 5 C 0.05 0.65 6.07 71.98 0.44 1.09 16 6 C 0.12 2.28 6.06 86.38 0.52 2.81 16 7 N -0.72 -16.98 5.49 -466.84 -2.56 -19.54 16 8 C 0.60 19.51 7.80 86.51 0.67 20.19 16 9 O -0.59 -22.87 16.16 -4.24 -0.07 -22.94 16 10 C -0.27 -9.39 6.27 -19.01 -0.12 -9.51 16 11 C 0.13 4.05 10.75 83.70 0.90 4.95 16 12 N -0.46 -16.47 2.74 -515.30 -1.41 -17.89 16 13 C 0.12 4.35 5.89 86.38 0.51 4.85 16 14 C 0.02 1.03 5.30 29.85 0.16 1.19 16 15 C -0.54 -28.23 9.11 25.60 0.23 -27.99 16 16 H 0.08 3.60 7.74 -2.91 -0.02 3.57 16 17 C 0.00 0.22 5.46 84.66 0.46 0.68 16 18 N -0.93 -55.29 13.29 21.45 0.28 -55.01 16 19 Si 0.97 41.82 29.54 68.60 2.03 43.84 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 21 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 23 C 0.07 2.51 6.79 38.92 0.26 2.77 16 24 C -0.13 -4.56 9.97 22.37 0.22 -4.34 16 25 C -0.10 -3.02 10.01 22.28 0.22 -2.79 16 26 C -0.14 -3.94 10.03 22.28 0.22 -3.72 16 27 C -0.09 -3.12 9.85 22.40 0.22 -2.90 16 28 C -0.09 -3.31 6.27 -20.08 -0.13 -3.44 16 29 H 0.24 3.10 7.80 -4.43 -0.03 3.07 16 30 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.93 8.14 -2.39 -0.02 0.92 16 32 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 1.29 8.14 -2.38 -0.02 1.28 16 35 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 36 H 0.41 8.01 7.35 -92.71 -0.68 7.32 16 37 H 0.21 4.56 7.38 -2.91 -0.02 4.54 16 38 H 0.09 3.09 8.14 -2.38 -0.02 3.07 16 39 H 0.11 3.42 8.11 -2.39 -0.02 3.40 16 40 H -0.01 -0.30 8.14 -2.38 -0.02 -0.32 16 41 H -0.01 -0.68 8.14 -2.39 -0.02 -0.69 16 42 H 0.26 14.80 8.31 -92.70 -0.77 14.03 16 43 H 0.12 4.11 8.06 -2.91 -0.02 4.08 16 44 H 0.15 3.36 8.06 -2.91 -0.02 3.33 16 45 H 0.15 3.26 8.06 -2.91 -0.02 3.24 16 46 H 0.12 4.23 7.45 -2.91 -0.02 4.21 16 Total: -1.00 -77.99 405.39 4.16 -73.83 By element: Atomic # 1 Polarization: 26.31 SS G_CDS: 0.30 Total: 26.62 kcal Atomic # 6 Polarization: -26.85 SS G_CDS: 7.11 Total: -19.74 kcal Atomic # 7 Polarization: -88.74 SS G_CDS: -3.69 Total: -92.44 kcal Atomic # 8 Polarization: -30.53 SS G_CDS: -1.60 Total: -32.12 kcal Atomic # 14 Polarization: 41.82 SS G_CDS: 2.03 Total: 43.84 kcal Total: -77.99 4.16 -73.83 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000767991031.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.438 kcal (2) G-P(sol) polarization free energy of solvation -77.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds