Wall clock time and date at job start Sat Apr 11 2020 06:02:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 O 1.42894 * 109.47179 * 198.40797 * 3 2 1 5 5 C 1.35709 * 117.00011 * 179.97438 * 4 3 2 6 6 C 1.39006 * 119.91018 * 179.97438 * 5 4 3 7 7 C 1.37696 * 120.08714 * 179.97438 * 6 5 4 8 8 C 1.39736 * 119.91275 * 0.02562 * 7 6 5 9 9 C 1.47603 * 120.09104 * 180.02562 * 8 7 6 10 10 O 1.21586 * 119.99596 * 335.15909 * 9 8 7 11 11 N 1.34773 * 120.00510 * 155.15580 * 9 8 7 12 12 C 1.46775 * 125.33714 * 354.51862 * 11 9 8 13 13 C 1.53964 * 106.62843 * 198.51080 * 12 11 9 14 14 H 1.09002 * 113.60446 * 94.61819 * 13 12 11 15 15 C 1.53927 * 109.25238 * 221.80728 * 13 12 11 16 16 N 1.46748 * 106.71942 * 81.63740 * 15 13 12 17 17 C 1.36930 * 125.33428 * 198.31903 * 16 15 13 18 18 H 1.07996 * 120.00589 * 180.02562 * 17 16 15 19 19 C 1.38813 * 119.99695 * 0.02562 * 17 16 15 20 20 N 1.31623 * 120.00082 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 120.00345 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46758 * 0.02562 * 21 19 17 23 23 H 1.48502 * 109.47369 * 119.99468 * 21 19 17 24 24 H 1.48498 * 109.47242 * 240.00177 * 21 19 17 25 25 C 1.46640 * 109.33964 * 18.33934 * 16 15 13 26 26 C 1.53697 * 108.01023 * 359.16191 * 25 16 15 27 27 H 1.09004 * 112.55523 * 105.91311 * 26 25 16 28 28 C 1.46663 * 125.34123 * 174.51014 * 11 9 8 29 29 C 1.39737 * 119.82302 * 0.27097 * 8 7 6 30 30 C 1.37697 * 119.91021 * 359.46922 * 29 8 7 31 31 H 4.38448 * 5.44413 * 180.02562 * 4 1 2 32 32 H 1.09002 * 109.47001 * 78.40298 * 3 2 1 33 33 H 1.09004 * 109.47339 * 318.40958 * 3 2 1 34 34 H 1.08000 * 119.95734 * 0.02811 * 6 5 4 35 35 H 1.07997 * 120.04796 * 180.02562 * 7 6 5 36 36 H 1.09006 * 110.02850 * 79.22092 * 12 11 9 37 37 H 1.09007 * 110.02821 * 317.80492 * 12 11 9 38 38 H 1.08999 * 110.00992 * 200.94941 * 15 13 12 39 39 H 1.08992 * 110.01349 * 322.32376 * 15 13 12 40 40 H 0.96994 * 120.00029 * 180.02562 * 20 19 17 41 41 H 1.09002 * 109.76483 * 239.52401 * 25 16 15 42 42 H 1.08997 * 109.76381 * 118.80519 * 25 16 15 43 43 H 1.09000 * 109.77463 * 59.84003 * 28 11 9 44 44 H 1.09000 * 109.77618 * 299.08257 * 28 11 9 45 45 H 1.08001 * 120.04484 * 179.70451 * 29 8 7 46 46 H 1.07994 * 119.95598 * 180.25059 * 30 29 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1218 1.2792 0.4254 5 6 4.4671 1.4483 0.4821 6 6 4.9959 2.6683 0.8875 7 6 6.3603 2.8437 0.9468 8 6 7.2137 1.7935 0.5983 9 6 8.6770 1.9771 0.6610 10 8 9.1544 3.0912 0.5661 11 7 9.4838 0.9098 0.8235 12 6 9.0332 -0.4662 1.0640 13 6 10.2385 -1.2298 1.6423 14 1 10.2542 -1.2600 2.7318 15 6 10.3094 -2.6272 1.0007 16 7 10.9694 -2.4617 -0.2995 17 6 10.9212 -3.3597 -1.3321 18 1 11.4415 -3.1500 -2.2550 19 6 10.2036 -4.5397 -1.1927 20 7 9.5691 -4.7952 -0.0681 21 14 10.1384 -5.7653 -2.6009 22 1 10.9292 -5.2462 -3.7458 23 1 10.7070 -7.0626 -2.1550 24 1 8.7278 -5.9614 -3.0215 25 6 11.6891 -1.1842 -0.3197 26 6 11.4600 -0.4883 1.0314 27 1 12.3394 -0.5238 1.6744 28 6 10.9496 0.9412 0.7877 29 6 6.6782 0.5707 0.1853 30 6 5.3127 0.4015 0.1338 31 1 -1.0502 -0.0004 0.0001 32 1 3.0095 -0.2058 -1.0067 33 1 3.0098 -0.7678 0.6822 34 1 4.3356 3.4793 1.1571 35 1 6.7704 3.7917 1.2623 36 1 8.7158 -0.9242 0.1271 37 1 8.2106 -0.4701 1.7793 38 1 10.8920 -3.2983 1.6318 39 1 9.3043 -3.0248 0.8607 40 1 9.0680 -5.6199 0.0294 41 1 11.3066 -0.5583 -1.1261 42 1 12.7542 -1.3634 -0.4660 43 1 11.3235 1.6041 1.5680 44 1 11.2873 1.2921 -0.1874 45 1 7.3345 -0.2418 -0.0894 46 1 4.8980 -0.5445 -0.1814 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001049102503.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:42 Heat of formation + Delta-G solvation = 59.372347 kcal Electronic energy + Delta-G solvation = -29109.470014 eV Core-core repulsion = 25160.558159 eV Total energy + Delta-G solvation = -3948.911855 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 340.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.75804 -39.99307 -38.43433 -37.14477 -35.03334 -33.80064 -32.48860 -31.34728 -30.63483 -30.05909 -29.45986 -27.83642 -25.72404 -25.53465 -23.87793 -22.85006 -22.16980 -20.16343 -19.79330 -19.39233 -18.77371 -18.40330 -17.35627 -16.81151 -16.36377 -16.24311 -16.04804 -15.22493 -14.92513 -14.70298 -14.46644 -14.22229 -13.88813 -13.60631 -13.46714 -13.29092 -12.99864 -12.85151 -12.68341 -12.46492 -12.12415 -11.88281 -11.66154 -11.57947 -11.52239 -11.15663 -10.99605 -10.89136 -10.77501 -10.52423 -10.40167 -10.17194 -10.06808 -9.91649 -9.74179 -9.66451 -9.18252 -8.70724 -8.50263 -8.27797 -6.91569 -5.77182 -3.15473 0.87956 1.22145 1.92580 2.38083 2.88677 3.18652 3.26960 3.33743 3.40791 3.42276 3.76836 4.00310 4.41441 4.55571 4.57011 4.73275 4.80643 4.88029 4.89761 5.02446 5.15507 5.22261 5.25812 5.41714 5.45416 5.46095 5.50119 5.60984 5.71533 5.82508 5.86639 5.90716 5.98815 6.09965 6.15324 6.22207 6.28063 6.33587 6.46931 6.54738 6.62279 6.65397 6.79482 7.07393 7.13346 7.36918 7.54976 7.70860 7.73457 8.22794 8.31646 9.14484 9.74514 10.37607 11.29427 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008636 B = 0.003501 C = 0.002618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.509630 B = 7996.852843 C =10692.791877 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.199 4.199 3 C 0.169 3.831 4 O -0.309 6.309 5 C 0.150 3.850 6 C -0.161 4.161 7 C -0.023 4.023 8 C -0.165 4.165 9 C 0.575 3.425 10 O -0.550 6.550 11 N -0.605 5.605 12 C 0.108 3.892 13 C -0.125 4.125 14 H 0.089 0.911 15 C 0.170 3.830 16 N -0.601 5.601 17 C -0.223 4.223 18 H 0.078 0.922 19 C -0.009 4.009 20 N -0.923 5.923 21 Si 0.912 3.088 22 H -0.280 1.280 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.142 3.858 26 C -0.109 4.109 27 H 0.096 0.904 28 C 0.121 3.879 29 C -0.050 4.050 30 C -0.215 4.215 31 H 0.225 0.775 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.140 0.860 36 H 0.085 0.915 37 H 0.070 0.930 38 H 0.021 0.979 39 H 0.097 0.903 40 H 0.252 0.748 41 H 0.025 0.975 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.069 0.931 45 H 0.151 0.849 46 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.613 10.210 4.029 15.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.199 4.199 3 C 0.095 3.905 4 O -0.223 6.223 5 C 0.105 3.895 6 C -0.180 4.180 7 C -0.042 4.042 8 C -0.169 4.169 9 C 0.365 3.635 10 O -0.430 6.430 11 N -0.337 5.337 12 C -0.014 4.014 13 C -0.145 4.145 14 H 0.107 0.893 15 C 0.045 3.955 16 N -0.328 5.328 17 C -0.351 4.351 18 H 0.096 0.904 19 C -0.205 4.205 20 N -0.571 5.571 21 Si 0.743 3.257 22 H -0.205 1.205 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.016 3.984 26 C -0.129 4.129 27 H 0.114 0.886 28 C -0.002 4.002 29 C -0.069 4.069 30 C -0.234 4.234 31 H 0.241 0.759 32 H 0.109 0.891 33 H 0.110 0.890 34 H 0.154 0.846 35 H 0.158 0.842 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.115 0.885 40 H 0.063 0.937 41 H 0.043 0.957 42 H 0.042 0.958 43 H 0.082 0.918 44 H 0.087 0.913 45 H 0.168 0.832 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -11.627 10.780 3.942 16.338 hybrid contribution -0.116 -1.049 -0.782 1.313 sum -11.743 9.731 3.160 15.575 Atomic orbital electron populations 1.25022 0.95861 0.96817 0.99988 1.22266 0.93519 1.02790 1.01296 1.19353 0.84975 0.84795 1.01364 1.86043 1.19589 1.34266 1.82368 1.19213 0.81533 0.94402 0.94395 1.20322 0.94904 0.96056 1.06699 1.20999 0.91432 0.98022 0.93768 1.19792 0.92973 0.95621 1.08467 1.17822 0.85848 0.83231 0.76608 1.90750 1.76783 1.23705 1.51722 1.48191 1.07081 1.08253 1.70166 1.22459 0.97727 0.80452 1.00764 1.23291 0.92580 0.99094 0.99505 0.89306 1.21413 1.00686 0.88294 0.85107 1.44243 1.57538 1.17717 1.13269 1.19109 1.26276 0.96993 0.92725 0.90390 1.24767 1.00163 0.98041 0.97494 1.69858 1.37393 1.25608 1.24256 0.86027 0.77324 0.81148 0.81181 1.20535 1.21735 1.21746 1.21233 0.95621 0.88380 0.93208 1.22779 0.98557 0.92904 0.98629 0.88589 1.21785 0.79553 0.97189 1.01651 1.21884 0.95134 0.96714 0.93125 1.21251 0.94137 0.99412 1.08555 0.75850 0.89061 0.88966 0.84617 0.84238 0.89740 0.91166 0.96127 0.88480 0.93745 0.95680 0.95842 0.91841 0.91309 0.83188 0.84580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.26 19.25 29.55 0.57 -0.69 16 2 C -0.20 -1.92 13.73 -37.12 -0.51 -2.43 16 3 C 0.17 1.55 5.21 34.37 0.18 1.73 16 4 O -0.31 -3.52 10.08 -18.83 -0.19 -3.71 16 5 C 0.15 1.77 6.70 -39.02 -0.26 1.50 16 6 C -0.16 -1.85 9.97 -39.49 -0.39 -2.24 16 7 C -0.02 -0.30 9.58 -39.22 -0.38 -0.67 16 8 C -0.17 -2.39 5.67 -104.96 -0.60 -2.98 16 9 C 0.57 9.65 7.62 -12.44 -0.09 9.55 16 10 O -0.55 -10.60 16.92 5.29 0.09 -10.51 16 11 N -0.60 -9.77 3.31 -173.49 -0.57 -10.34 16 12 C 0.11 1.71 4.33 -3.39 -0.01 1.70 16 13 C -0.12 -2.09 4.17 -88.36 -0.37 -2.46 16 14 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 15 C 0.17 3.72 4.81 -3.42 -0.02 3.70 16 16 N -0.60 -14.24 3.37 -171.94 -0.58 -14.82 16 17 C -0.22 -5.86 10.25 -15.06 -0.15 -6.01 16 18 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 19 C -0.01 -0.24 5.48 -17.43 -0.10 -0.34 16 20 N -0.92 -25.07 10.16 55.49 0.56 -24.51 16 21 Si 0.91 21.12 29.55 -169.99 -5.02 16.10 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 25 C 0.14 2.78 6.60 -3.60 -0.02 2.75 16 26 C -0.11 -1.76 4.02 -88.60 -0.36 -2.12 16 27 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 28 C 0.12 1.88 6.24 -3.58 -0.02 1.85 16 29 C -0.05 -0.68 8.17 -39.22 -0.32 -1.00 16 30 C -0.21 -2.52 9.01 -39.50 -0.36 -2.88 16 31 H 0.22 0.87 7.80 -54.08 -0.42 0.45 16 32 H 0.09 0.71 7.65 -51.93 -0.40 0.32 16 33 H 0.09 0.72 7.65 -51.93 -0.40 0.32 16 34 H 0.14 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.14 1.66 7.84 -52.49 -0.41 1.25 16 36 H 0.08 1.50 5.94 -51.93 -0.31 1.20 16 37 H 0.07 1.00 7.16 -51.92 -0.37 0.63 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.10 2.35 6.00 -51.93 -0.31 2.03 16 40 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 41 H 0.03 0.51 7.29 -51.93 -0.38 0.13 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 44 H 0.07 1.09 7.44 -51.93 -0.39 0.71 16 45 H 0.15 2.12 4.44 -52.49 -0.23 1.88 16 46 H 0.14 1.32 6.28 -52.49 -0.33 0.99 16 LS Contribution 375.91 15.07 5.66 5.66 Total: -1.00 -31.40 375.91 -9.29 -40.69 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -6.03 Total: 2.47 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -3.21 Total: -1.04 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -0.59 Total: -49.67 kcal Atomic # 8 Polarization: -14.12 SS G_CDS: -0.10 Total: -14.22 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.40 -9.29 -40.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001049102503.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.062 kcal (2) G-P(sol) polarization free energy of solvation -31.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds