Wall clock time and date at job start Sat Apr 11 2020 06:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.29331 * 2 1 4 4 C 1.54003 * 110.32538 * 122.14048 * 2 1 3 5 5 N 1.47489 * 107.08412 * 120.29657 * 4 2 1 6 6 C 1.34777 * 127.03467 * 154.51658 * 5 4 2 7 7 O 1.21276 * 120.00256 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99629 * 0.02562 * 6 5 4 9 9 C 1.53784 * 113.61272 * 180.02562 * 8 6 5 10 10 C 1.53787 * 87.07923 * 89.11465 * 9 8 6 11 11 C 1.53779 * 113.61433 * 277.49565 * 8 6 5 12 12 C 1.48117 * 105.93075 * 334.77992 * 5 4 2 13 13 C 1.54589 * 103.42333 * 39.02335 * 12 5 4 14 14 H 1.08999 * 110.57896 * 81.17414 * 13 12 5 15 15 C 1.53008 * 110.83370 * 204.44378 * 13 12 5 16 16 N 1.46496 * 109.47228 * 288.56159 * 15 13 12 17 17 C 1.34780 * 120.00164 * 179.97438 * 16 15 13 18 18 O 1.21280 * 119.99580 * 0.02562 * 17 16 15 19 19 C 1.50694 * 119.99987 * 180.02562 * 17 16 15 20 20 S 1.80998 * 109.47005 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00197 * 180.02562 * 20 19 17 22 22 H 1.08009 * 119.99943 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00119 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00001 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00183 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46972 * 90.00209 * 25 23 21 27 27 H 1.48496 * 109.47681 * 209.99917 * 25 23 21 28 28 H 1.48500 * 109.46978 * 330.00547 * 25 23 21 29 29 H 1.08999 * 109.46877 * 299.32070 * 1 2 3 30 30 H 1.09005 * 109.47258 * 59.30977 * 1 2 3 31 31 H 1.08995 * 109.47586 * 179.31146 * 1 2 3 32 32 H 1.08997 * 109.91200 * 0.93866 * 4 2 1 33 33 H 1.08997 * 109.91323 * 239.65870 * 4 2 1 34 34 H 1.09004 * 112.91097 * 48.75107 * 8 6 5 35 35 H 1.09004 * 113.61451 * 334.56951 * 9 8 6 36 36 H 1.08994 * 113.61477 * 203.66253 * 9 8 6 37 37 H 1.08997 * 113.61028 * 139.98291 * 10 9 8 38 38 H 1.09000 * 113.61529 * 270.88430 * 10 9 8 39 39 H 1.09006 * 113.61307 * 156.34016 * 11 8 6 40 40 H 1.08999 * 113.69146 * 25.44502 * 11 8 6 41 41 H 1.08999 * 110.65911 * 157.50442 * 12 5 4 42 42 H 1.08995 * 110.66231 * 280.61865 * 12 5 4 43 43 H 1.09003 * 109.46918 * 48.56288 * 15 13 12 44 44 H 1.09000 * 109.47057 * 168.56034 * 15 13 12 45 45 H 0.97005 * 119.99588 * 0.02562 * 16 15 13 46 46 H 1.09003 * 109.47171 * 300.00006 * 19 17 16 47 47 H 1.09000 * 109.47486 * 60.00170 * 19 17 16 48 48 H 0.97002 * 120.00286 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 6 2.0649 -0.7683 1.2228 5 7 2.8824 -1.8837 0.7101 6 6 3.8946 -2.5072 1.3451 7 8 4.4844 -3.4159 0.7999 8 6 4.2934 -2.0751 2.7327 9 6 5.4635 -2.8839 3.3172 10 6 6.3992 -1.8501 2.6686 11 6 5.2301 -0.8556 2.7528 12 6 2.3676 -2.1743 -0.6480 13 6 2.0693 -0.7720 -1.2263 14 1 2.9824 -0.3104 -1.6021 15 6 1.0084 -0.8513 -2.3260 16 7 1.5851 -1.4811 -3.5164 17 6 0.8294 -1.6580 -4.6183 18 8 -0.3279 -1.2954 -4.6245 19 6 1.4225 -2.3064 -5.8425 20 16 0.1676 -2.4000 -7.1435 21 6 1.1048 -3.1766 -8.4175 22 1 2.1385 -3.4378 -8.2446 23 6 0.5152 -3.4518 -9.6434 24 7 1.2153 -4.0324 -10.5950 25 14 -1.2723 -2.9994 -9.9426 26 1 -1.3488 -1.6231 -10.4950 27 1 -1.8696 -3.9548 -10.9099 28 1 -2.0196 -3.0606 -8.6608 29 1 -0.3633 0.5032 0.8960 30 1 -0.3634 0.5245 -0.8838 31 1 -0.3634 -1.0275 -0.0123 32 1 1.2330 -1.1570 1.8100 33 1 2.6793 -0.1089 1.8359 34 1 3.4438 -1.9843 3.4095 35 1 5.5575 -3.8840 2.8940 36 1 5.4961 -2.8795 4.4067 37 1 7.2496 -1.5782 3.2939 38 1 6.6863 -2.1011 1.6475 39 1 5.1989 -0.2965 3.6880 40 1 5.1365 -0.2170 1.8744 41 1 3.1242 -2.6828 -1.2454 42 1 1.4552 -2.7681 -0.5946 43 1 0.1640 -1.4442 -1.9742 44 1 0.6679 0.1536 -2.5755 45 1 2.5106 -1.7714 -3.5112 46 1 2.2668 -1.7136 -6.1947 47 1 1.7630 -3.3112 -5.5927 48 1 0.8031 -4.2251 -11.4517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051734156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:50 Heat of formation + Delta-G solvation = -57.681071 kcal Electronic energy + Delta-G solvation = -26971.123085 eV Core-core repulsion = 23152.579364 eV Total energy + Delta-G solvation = -3818.543721 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.10777 -39.74313 -38.79207 -37.22975 -34.89697 -33.19179 -32.43117 -30.84916 -29.31877 -27.61062 -26.65306 -26.12547 -25.64757 -25.19289 -23.28627 -21.22002 -20.55026 -19.81804 -18.86236 -17.80877 -17.49651 -16.87652 -16.34764 -16.24364 -15.96326 -15.75976 -15.26777 -14.95496 -14.89503 -14.71827 -14.04497 -13.81551 -13.64304 -13.37837 -13.20123 -12.93670 -12.89416 -12.84802 -12.79128 -12.56214 -12.46761 -12.28531 -11.93199 -11.41874 -11.33248 -11.24822 -11.15599 -11.00547 -10.94214 -10.86529 -10.85006 -10.59628 -10.10283 -9.85474 -9.54789 -9.12992 -9.02754 -8.97239 -8.49972 -6.91357 -6.28088 -3.99940 2.21917 2.48180 2.75816 2.96041 3.28704 3.33817 3.50672 3.62863 3.91663 3.98611 4.06268 4.09908 4.23232 4.33432 4.34153 4.39114 4.58454 4.67473 4.73170 4.84306 4.89356 4.96749 5.02859 5.10712 5.10834 5.18909 5.26460 5.27210 5.30639 5.32173 5.42286 5.43933 5.45979 5.54794 5.62545 5.65833 5.72457 5.73548 5.77965 5.78953 5.93002 5.97297 6.02532 6.48958 7.12467 7.56922 7.79028 7.94948 8.42783 8.46615 9.17934 10.81137 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.001998 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.003346 B =14007.950641 C =15034.387768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 H 0.089 0.911 4 C 0.104 3.896 5 N -0.621 5.621 6 C 0.551 3.449 7 O -0.533 6.533 8 C -0.138 4.138 9 C -0.122 4.122 10 C -0.142 4.142 11 C -0.124 4.124 12 C 0.108 3.892 13 C -0.111 4.111 14 H 0.091 0.909 15 C 0.132 3.868 16 N -0.739 5.739 17 C 0.532 3.468 18 O -0.520 6.520 19 C -0.125 4.125 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.092 0.908 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.073 0.927 45 H 0.399 0.601 46 H 0.097 0.903 47 H 0.098 0.902 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.860 9.663 32.127 34.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.115 4.115 3 H 0.107 0.893 4 C -0.019 4.019 5 N -0.355 5.355 6 C 0.339 3.661 7 O -0.410 6.410 8 C -0.159 4.159 9 C -0.160 4.160 10 C -0.179 4.179 11 C -0.162 4.162 12 C -0.015 4.015 13 C -0.131 4.131 14 H 0.109 0.891 15 C 0.008 3.992 16 N -0.394 5.394 17 C 0.318 3.682 18 O -0.394 6.394 19 C -0.276 4.276 20 S 0.084 5.916 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.101 0.899 36 H 0.106 0.894 37 H 0.089 0.911 38 H 0.103 0.897 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.105 0.895 42 H 0.095 0.905 43 H 0.091 0.909 44 H 0.091 0.909 45 H 0.233 0.767 46 H 0.115 0.885 47 H 0.116 0.884 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.328 9.641 31.702 33.417 hybrid contribution 1.051 -0.395 -0.361 1.179 sum 5.378 9.246 31.341 33.116 Atomic orbital electron populations 1.21978 0.93486 1.02743 1.02779 1.22023 0.96926 0.99560 0.92975 0.89268 1.22272 0.94796 0.88226 0.96638 1.48730 1.33540 1.35531 1.17693 1.19749 0.77975 0.81481 0.86862 1.90724 1.52992 1.29663 1.67570 1.22400 0.99396 0.99920 0.94170 1.22778 0.93665 0.99564 0.99994 1.22880 0.96861 0.96209 1.01979 1.22820 0.95317 0.95245 1.02823 1.22509 0.99833 0.96400 0.82712 1.22515 0.99525 0.96129 0.94942 0.89083 1.21366 0.95264 0.98911 0.83663 1.46022 1.15587 1.64168 1.13613 1.20266 0.86187 0.78198 0.83579 1.90697 1.16919 1.49095 1.82710 1.23285 1.04137 1.03665 0.96476 1.84761 1.17351 1.80393 1.09070 1.22320 1.00759 1.45181 0.98618 0.89373 1.24722 0.98449 0.93494 0.94717 1.69940 1.36930 1.40244 1.04556 0.86726 0.85049 0.79235 0.80777 1.19223 1.19955 1.15931 0.92109 0.91194 0.91971 0.90987 0.90490 0.88347 0.89920 0.89382 0.91115 0.89685 0.88999 0.91144 0.89486 0.90484 0.90863 0.90868 0.76673 0.88494 0.88411 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 7.79 37.16 0.29 -0.52 16 2 C -0.10 -0.49 3.53 -89.25 -0.31 -0.81 16 3 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 4 C 0.10 0.54 6.42 -2.98 -0.02 0.52 16 5 N -0.62 -5.06 3.29 -169.99 -0.56 -5.62 16 6 C 0.55 5.47 7.15 -10.98 -0.08 5.39 16 7 O -0.53 -7.46 15.96 5.56 0.09 -7.37 16 8 C -0.14 -0.92 3.40 -90.96 -0.31 -1.23 16 9 C -0.12 -0.83 7.45 -25.91 -0.19 -1.02 16 10 C -0.14 -0.94 7.73 -25.95 -0.20 -1.14 16 11 C -0.12 -0.66 7.33 -25.95 -0.19 -0.85 16 12 C 0.11 0.92 6.44 -2.32 -0.01 0.90 16 13 C -0.11 -0.78 2.99 -88.93 -0.27 -1.05 16 14 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 15 C 0.13 1.28 3.86 -4.04 -0.02 1.26 16 16 N -0.74 -8.86 5.47 -60.29 -0.33 -9.19 16 17 C 0.53 9.18 7.85 -10.99 -0.09 9.09 16 18 O -0.52 -10.89 15.86 5.56 0.09 -10.81 16 19 C -0.13 -2.40 6.16 36.00 0.22 -2.18 16 20 S -0.14 -3.60 18.55 -107.50 -1.99 -5.59 16 21 C -0.52 -15.08 10.04 30.94 0.31 -14.77 16 22 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 23 C 0.09 2.79 5.50 -17.43 -0.10 2.69 16 24 N -0.88 -26.69 13.97 55.49 0.78 -25.92 16 25 Si 0.86 21.85 27.74 -169.99 -4.71 17.13 16 26 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.24 -5.98 6.74 56.52 0.38 -5.60 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.43 6.76 -51.93 -0.35 0.08 16 31 H 0.06 0.37 7.51 -51.93 -0.39 -0.02 16 32 H 0.07 0.33 7.68 -51.93 -0.40 -0.07 16 33 H 0.08 0.29 7.41 -51.93 -0.38 -0.09 16 34 H 0.10 0.49 8.13 -51.93 -0.42 0.07 16 35 H 0.08 0.73 7.43 -51.93 -0.39 0.35 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 39 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 41 H 0.09 0.86 7.85 -51.93 -0.41 0.45 16 42 H 0.08 0.68 7.93 -51.93 -0.41 0.27 16 43 H 0.07 0.76 6.81 -51.93 -0.35 0.41 16 44 H 0.07 0.75 7.37 -51.93 -0.38 0.37 16 45 H 0.40 3.87 8.47 -40.82 -0.35 3.52 16 46 H 0.10 1.73 8.14 -51.91 -0.42 1.31 16 47 H 0.10 1.77 8.14 -51.92 -0.42 1.34 16 48 H 0.27 7.62 8.31 -40.82 -0.34 7.28 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -36.04 396.41 -9.67 -45.71 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -8.03 Total: -0.60 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: -0.96 Total: -3.72 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: -0.11 Total: -40.73 kcal Atomic # 8 Polarization: -18.35 SS G_CDS: 0.18 Total: -18.18 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -4.71 Total: 17.13 kcal Atomic # 16 Polarization: -3.60 SS G_CDS: -1.99 Total: -5.59 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -36.04 -9.67 -45.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051734156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.972 kcal (2) G-P(sol) polarization free energy of solvation -36.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.709 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds