Wall clock time and date at job start Sat Apr 11 2020 06:02:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.29331 * 2 1 4 4 C 1.54003 * 110.32538 * 122.14048 * 2 1 3 5 5 N 1.47489 * 107.08412 * 120.29657 * 4 2 1 6 6 C 1.34777 * 127.03467 * 154.51658 * 5 4 2 7 7 O 1.21276 * 120.00256 * 180.02562 * 6 5 4 8 8 C 1.50703 * 119.99629 * 0.02562 * 6 5 4 9 9 C 1.53784 * 113.61272 * 180.02562 * 8 6 5 10 10 C 1.53787 * 87.07923 * 89.11465 * 9 8 6 11 11 C 1.53779 * 113.61433 * 277.49565 * 8 6 5 12 12 C 1.48117 * 105.93075 * 334.77992 * 5 4 2 13 13 C 1.54589 * 103.42333 * 39.02335 * 12 5 4 14 14 H 1.08999 * 110.57896 * 81.17414 * 13 12 5 15 15 C 1.53008 * 110.83370 * 204.44378 * 13 12 5 16 16 N 1.46496 * 109.47228 * 288.56159 * 15 13 12 17 17 C 1.34780 * 120.00164 * 179.97438 * 16 15 13 18 18 O 1.21280 * 119.99580 * 0.02562 * 17 16 15 19 19 C 1.50694 * 119.99987 * 180.02562 * 17 16 15 20 20 S 1.80998 * 109.47005 * 180.02562 * 19 17 16 21 21 C 1.76199 * 100.00197 * 180.02562 * 20 19 17 22 22 H 1.08009 * 119.99943 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00119 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00001 * 180.02562 * 23 21 20 25 25 Si 1.86795 * 120.00183 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46972 * 90.00209 * 25 23 21 27 27 H 1.48496 * 109.47681 * 209.99917 * 25 23 21 28 28 H 1.48500 * 109.46978 * 330.00547 * 25 23 21 29 29 H 1.08999 * 109.46877 * 299.32070 * 1 2 3 30 30 H 1.09005 * 109.47258 * 59.30977 * 1 2 3 31 31 H 1.08995 * 109.47586 * 179.31146 * 1 2 3 32 32 H 1.08997 * 109.91200 * 0.93866 * 4 2 1 33 33 H 1.08997 * 109.91323 * 239.65870 * 4 2 1 34 34 H 1.09004 * 112.91097 * 48.75107 * 8 6 5 35 35 H 1.09004 * 113.61451 * 334.56951 * 9 8 6 36 36 H 1.08994 * 113.61477 * 203.66253 * 9 8 6 37 37 H 1.08997 * 113.61028 * 139.98291 * 10 9 8 38 38 H 1.09000 * 113.61529 * 270.88430 * 10 9 8 39 39 H 1.09006 * 113.61307 * 156.34016 * 11 8 6 40 40 H 1.08999 * 113.69146 * 25.44502 * 11 8 6 41 41 H 1.08999 * 110.65911 * 157.50442 * 12 5 4 42 42 H 1.08995 * 110.66231 * 280.61865 * 12 5 4 43 43 H 1.09003 * 109.46918 * 48.56288 * 15 13 12 44 44 H 1.09000 * 109.47057 * 168.56034 * 15 13 12 45 45 H 0.97005 * 119.99588 * 0.02562 * 16 15 13 46 46 H 1.09003 * 109.47171 * 300.00006 * 19 17 16 47 47 H 1.09000 * 109.47486 * 60.00170 * 19 17 16 48 48 H 0.97002 * 120.00286 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9081 1.0223 0.0000 4 6 2.0649 -0.7683 1.2228 5 7 2.8824 -1.8837 0.7101 6 6 3.8946 -2.5072 1.3451 7 8 4.4844 -3.4159 0.7999 8 6 4.2934 -2.0751 2.7327 9 6 5.4635 -2.8839 3.3172 10 6 6.3992 -1.8501 2.6686 11 6 5.2301 -0.8556 2.7528 12 6 2.3676 -2.1743 -0.6480 13 6 2.0693 -0.7720 -1.2263 14 1 2.9824 -0.3104 -1.6021 15 6 1.0084 -0.8513 -2.3260 16 7 1.5851 -1.4811 -3.5164 17 6 0.8294 -1.6580 -4.6183 18 8 -0.3279 -1.2954 -4.6245 19 6 1.4225 -2.3064 -5.8425 20 16 0.1676 -2.4000 -7.1435 21 6 1.1048 -3.1766 -8.4175 22 1 2.1385 -3.4378 -8.2446 23 6 0.5152 -3.4518 -9.6434 24 7 1.2153 -4.0324 -10.5950 25 14 -1.2723 -2.9994 -9.9426 26 1 -1.3488 -1.6231 -10.4950 27 1 -1.8696 -3.9548 -10.9099 28 1 -2.0196 -3.0606 -8.6608 29 1 -0.3633 0.5032 0.8960 30 1 -0.3634 0.5245 -0.8838 31 1 -0.3634 -1.0275 -0.0123 32 1 1.2330 -1.1570 1.8100 33 1 2.6793 -0.1089 1.8359 34 1 3.4438 -1.9843 3.4095 35 1 5.5575 -3.8840 2.8940 36 1 5.4961 -2.8795 4.4067 37 1 7.2496 -1.5782 3.2939 38 1 6.6863 -2.1011 1.6475 39 1 5.1989 -0.2965 3.6880 40 1 5.1365 -0.2170 1.8744 41 1 3.1242 -2.6828 -1.2454 42 1 1.4552 -2.7681 -0.5946 43 1 0.1640 -1.4442 -1.9742 44 1 0.6679 0.1536 -2.5755 45 1 2.5106 -1.7714 -3.5112 46 1 2.2668 -1.7136 -6.1947 47 1 1.7630 -3.3112 -5.5927 48 1 0.8031 -4.2251 -11.4517 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051734156.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:49 Heat of formation + Delta-G solvation = -82.211136 kcal Electronic energy + Delta-G solvation = -26972.186789 eV Core-core repulsion = 23152.579364 eV Total energy + Delta-G solvation = -3819.607425 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.75856 -40.76797 -39.69458 -37.92262 -35.94349 -34.68243 -33.95537 -31.81043 -30.45780 -28.35414 -27.85153 -27.14085 -26.58679 -25.97229 -23.92715 -21.97129 -21.64557 -20.53911 -19.86987 -19.35304 -18.15976 -17.75721 -17.65347 -17.12858 -16.94387 -16.84788 -16.64603 -16.10424 -15.75252 -15.70506 -15.27476 -14.97196 -14.74488 -14.59672 -14.23319 -14.07564 -13.71332 -13.51113 -13.35111 -13.34292 -13.27475 -13.09633 -13.02162 -12.99177 -12.85364 -12.64355 -11.98838 -11.89062 -11.79887 -11.74154 -11.46522 -11.35143 -11.32991 -11.17820 -11.00669 -10.82119 -10.55496 -10.13764 -9.78900 -9.00431 -8.52285 -6.23379 0.98282 1.31048 1.46196 1.51177 1.55406 1.55632 1.86315 2.21558 2.25975 2.70332 2.85713 3.32033 3.43953 3.54746 3.60774 3.68286 3.78209 3.88009 3.91979 4.08290 4.19226 4.21386 4.23829 4.30937 4.45898 4.49181 4.58591 4.63414 4.65655 4.72095 4.74470 4.81230 4.86641 4.89392 4.99411 5.00902 5.07464 5.11327 5.16023 5.22427 5.25658 5.42078 5.46579 5.49106 5.69666 6.10444 6.41691 6.48735 6.92470 7.08264 7.16316 8.60192 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.020538 B = 0.001998 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1363.003346 B =14007.950641 C =15034.387768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.087 4.087 3 H 0.109 0.891 4 C 0.102 3.898 5 N -0.619 5.619 6 C 0.541 3.459 7 O -0.588 6.588 8 C -0.136 4.136 9 C -0.125 4.125 10 C -0.150 4.150 11 C -0.108 4.108 12 C 0.103 3.897 13 C -0.098 4.098 14 H 0.098 0.902 15 C 0.133 3.867 16 N -0.716 5.716 17 C 0.537 3.463 18 O -0.559 6.559 19 C -0.115 4.115 20 S -0.171 6.171 21 C -0.531 4.531 22 H 0.060 0.940 23 C 0.043 3.957 24 N -0.917 5.917 25 Si 0.917 3.083 26 H -0.261 1.261 27 H -0.259 1.259 28 H -0.236 1.236 29 H 0.078 0.922 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.084 0.916 33 H 0.101 0.899 34 H 0.124 0.876 35 H 0.051 0.949 36 H 0.114 0.886 37 H 0.085 0.915 38 H 0.054 0.946 39 H 0.122 0.878 40 H 0.068 0.932 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.069 0.931 44 H 0.075 0.925 45 H 0.413 0.587 46 H 0.112 0.888 47 H 0.110 0.890 48 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.222 11.947 35.075 37.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.106 4.106 3 H 0.127 0.873 4 C -0.020 4.020 5 N -0.352 5.352 6 C 0.331 3.669 7 O -0.468 6.468 8 C -0.157 4.157 9 C -0.163 4.163 10 C -0.187 4.187 11 C -0.146 4.146 12 C -0.020 4.020 13 C -0.118 4.118 14 H 0.116 0.884 15 C 0.010 3.990 16 N -0.370 5.370 17 C 0.322 3.678 18 O -0.438 6.438 19 C -0.266 4.266 20 S 0.055 5.945 21 C -0.678 4.678 22 H 0.078 0.922 23 C -0.162 4.162 24 N -0.555 5.555 25 Si 0.739 3.261 26 H -0.185 1.185 27 H -0.184 1.184 28 H -0.160 1.160 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.102 0.898 33 H 0.119 0.881 34 H 0.142 0.858 35 H 0.070 0.930 36 H 0.133 0.867 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.140 0.860 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.087 0.913 44 H 0.093 0.907 45 H 0.249 0.751 46 H 0.130 0.870 47 H 0.128 0.872 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.711 11.951 34.689 36.877 hybrid contribution 1.369 -1.126 -1.162 2.120 sum 5.080 10.825 33.526 35.595 Atomic orbital electron populations 1.21971 0.93494 1.02222 1.03255 1.22037 0.96793 1.00206 0.91582 0.87264 1.22504 0.95124 0.87529 0.96849 1.48822 1.33139 1.35865 1.17359 1.20444 0.77649 0.80825 0.87982 1.90697 1.54913 1.32150 1.69043 1.22429 1.00428 1.00569 0.92286 1.22848 0.94097 0.97964 1.01367 1.22871 0.98165 0.97111 1.00564 1.22831 0.93143 0.94376 1.04236 1.22477 0.98999 0.97181 0.83332 1.22394 0.98978 0.95568 0.94837 0.88410 1.21526 0.95957 0.98510 0.83055 1.45851 1.15771 1.62567 1.12812 1.19856 0.85798 0.78035 0.84069 1.90686 1.18495 1.51161 1.83424 1.23293 1.02589 1.05188 0.95493 1.84632 1.19761 1.79899 1.10194 1.22473 1.00025 1.45229 1.00107 0.92167 1.25613 1.02614 0.93434 0.94558 1.70023 1.38875 1.41368 1.05268 0.85830 0.80031 0.79464 0.80812 1.18538 1.18359 1.15983 0.90307 0.92139 0.92966 0.89806 0.88106 0.85784 0.92984 0.86747 0.89617 0.92683 0.85964 0.91323 0.91462 0.90961 0.91307 0.90650 0.75101 0.86957 0.87201 0.91360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 7.79 71.98 0.56 -0.65 16 2 C -0.09 -0.62 3.53 -9.90 -0.03 -0.65 16 3 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 4 C 0.10 0.71 6.42 86.53 0.56 1.26 16 5 N -0.62 -9.18 3.29 -810.11 -2.67 -11.85 16 6 C 0.54 10.46 7.15 87.66 0.63 11.09 16 7 O -0.59 -17.28 15.96 -3.02 -0.05 -17.33 16 8 C -0.14 -1.53 3.40 -11.01 -0.04 -1.57 16 9 C -0.13 -1.57 7.45 31.12 0.23 -1.34 16 10 C -0.15 -1.83 7.73 31.10 0.24 -1.59 16 11 C -0.11 -0.81 7.33 31.10 0.23 -0.59 16 12 C 0.10 1.68 6.44 86.61 0.56 2.24 16 13 C -0.10 -1.18 2.99 -9.70 -0.03 -1.21 16 14 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 15 C 0.13 2.36 3.86 86.38 0.33 2.69 16 16 N -0.72 -16.23 5.47 -463.05 -2.53 -18.76 16 17 C 0.54 18.06 7.85 87.65 0.69 18.75 16 18 O -0.56 -23.17 15.86 -3.03 -0.05 -23.22 16 19 C -0.11 -4.35 6.16 71.23 0.44 -3.91 16 20 S -0.17 -8.70 18.55 -56.49 -1.05 -9.75 16 21 C -0.53 -31.28 10.04 67.95 0.68 -30.60 16 22 H 0.06 3.76 8.03 -2.91 -0.02 3.73 16 23 C 0.04 2.56 5.50 84.86 0.47 3.02 16 24 N -0.92 -56.47 13.97 21.65 0.30 -56.17 16 25 Si 0.92 45.27 27.74 68.60 1.90 47.17 16 26 H -0.26 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 28 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 29 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 30 H 0.06 0.62 6.76 -2.38 -0.02 0.61 16 31 H 0.05 0.53 7.51 -2.39 -0.02 0.51 16 32 H 0.08 0.45 7.68 -2.39 -0.02 0.43 16 33 H 0.10 0.29 7.41 -2.39 -0.02 0.27 16 34 H 0.12 0.77 8.13 -2.39 -0.02 0.75 16 35 H 0.05 0.98 7.43 -2.39 -0.02 0.96 16 36 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.05 1.00 8.07 -2.39 -0.02 0.98 16 39 H 0.12 0.25 8.14 -2.38 -0.02 0.23 16 40 H 0.07 0.57 8.10 -2.39 -0.02 0.55 16 41 H 0.07 1.37 7.85 -2.39 -0.02 1.35 16 42 H 0.07 1.25 7.93 -2.39 -0.02 1.23 16 43 H 0.07 1.35 6.81 -2.39 -0.02 1.33 16 44 H 0.08 1.40 7.37 -2.39 -0.02 1.38 16 45 H 0.41 7.38 8.47 -92.70 -0.79 6.60 16 46 H 0.11 3.92 8.14 -2.39 -0.02 3.91 16 47 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 48 H 0.28 15.74 8.31 -92.71 -0.77 14.97 16 Total: -1.00 -81.39 396.41 1.50 -79.89 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 0.13 Total: 13.04 kcal Atomic # 6 Polarization: -8.55 SS G_CDS: 5.51 Total: -3.05 kcal Atomic # 7 Polarization: -81.88 SS G_CDS: -4.90 Total: -86.78 kcal Atomic # 8 Polarization: -40.45 SS G_CDS: -0.10 Total: -40.54 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 1.90 Total: 47.17 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.05 Total: -9.75 kcal Total: -81.39 1.50 -79.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051734156.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.319 kcal (2) G-P(sol) polarization free energy of solvation -81.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds