Wall clock time and date at job start Sat Apr 11 2020 06:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50697 * 120.00102 * 2 1 4 4 C 1.32999 * 119.99828 * 179.97438 * 2 1 3 5 5 C 1.47103 * 119.99828 * 5.63600 * 4 2 1 6 6 O 1.21608 * 120.00118 * 354.69783 * 5 4 2 7 7 N 1.34782 * 119.99551 * 174.69542 * 5 4 2 8 8 C 1.48117 * 127.03401 * 359.95709 * 7 5 4 9 9 C 1.54942 * 103.25108 * 140.74323 * 8 7 5 10 10 H 1.09007 * 110.74028 * 279.03590 * 9 8 7 11 11 C 1.53001 * 110.73629 * 155.71699 * 9 8 7 12 12 C 1.54616 * 102.84301 * 37.37767 * 9 8 7 13 13 H 1.08996 * 110.41256 * 97.08085 * 12 9 8 14 14 C 1.52993 * 110.32957 * 219.26095 * 12 9 8 15 15 N 1.46498 * 109.47271 * 182.07503 * 14 12 9 16 16 C 1.34779 * 120.00181 * 180.02562 * 15 14 12 17 17 O 1.21284 * 119.99659 * 359.97438 * 16 15 14 18 18 C 1.50695 * 120.00092 * 180.02562 * 16 15 14 19 19 S 1.80998 * 109.47235 * 179.97438 * 18 16 15 20 20 C 1.76198 * 100.00237 * 179.97438 * 19 18 16 21 21 H 1.08003 * 119.99832 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00084 * 179.97438 * 20 19 18 23 23 N 1.31632 * 120.00177 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00047 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47229 * 90.00037 * 24 22 20 26 26 H 1.48497 * 109.47282 * 210.00101 * 24 22 20 27 27 H 1.48506 * 109.46788 * 330.00064 * 24 22 20 28 28 C 1.47486 * 127.03190 * 179.97438 * 7 5 4 29 29 H 1.08997 * 109.47240 * 238.12012 * 1 2 3 30 30 H 1.08999 * 109.46895 * 358.12303 * 1 2 3 31 31 H 1.09003 * 109.47225 * 118.12100 * 1 2 3 32 32 H 1.09004 * 109.47076 * 270.00021 * 3 2 1 33 33 H 1.09001 * 109.46996 * 29.99595 * 3 2 1 34 34 H 1.09001 * 109.47466 * 150.00354 * 3 2 1 35 35 H 1.07992 * 119.99664 * 185.63801 * 4 2 1 36 36 H 1.08995 * 110.66172 * 259.18209 * 8 7 5 37 37 H 1.08998 * 110.66124 * 22.13681 * 8 7 5 38 38 H 1.08999 * 109.46819 * 306.57667 * 11 9 8 39 39 H 1.08992 * 109.47718 * 66.58374 * 11 9 8 40 40 H 1.09002 * 109.46995 * 186.58158 * 11 9 8 41 41 H 1.08997 * 109.47411 * 62.07030 * 14 12 9 42 42 H 1.09003 * 109.46784 * 302.07209 * 14 12 9 43 43 H 0.96998 * 119.99716 * 359.97438 * 15 14 12 44 44 H 1.09003 * 109.47011 * 299.99475 * 18 16 15 45 45 H 1.08997 * 109.47345 * 59.99395 * 18 16 15 46 46 H 0.97002 * 119.99866 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.91162 * 86.05323 * 28 7 5 48 48 H 1.09003 * 109.91172 * 324.77152 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4417 -2.4227 -0.1240 6 8 0.2256 -2.4272 -0.1304 7 7 2.1205 -3.5822 -0.2311 8 6 3.5912 -3.7572 -0.2416 9 6 3.8018 -5.0436 0.5960 10 1 3.7681 -4.8199 1.6623 11 6 5.1220 -5.7218 0.2246 12 6 2.5992 -5.9233 0.1829 13 1 2.8938 -6.6299 -0.5930 14 6 2.0446 -6.6699 1.3977 15 7 0.9392 -7.5342 0.9769 16 6 0.2929 -8.2921 1.8850 17 8 0.6270 -8.2588 3.0504 18 6 -0.8438 -9.1816 1.4520 19 16 -1.5000 -10.0647 2.8892 20 6 -2.7774 -11.0005 2.1164 21 1 -2.9443 -10.9112 1.0531 22 6 -3.5689 -11.8524 2.8741 23 7 -3.3651 -11.9616 4.1699 24 14 -4.9237 -12.8440 2.0549 25 1 -4.3790 -14.1511 1.6076 26 1 -6.0253 -13.0723 3.0241 27 1 -5.4436 -12.0967 0.8815 28 6 1.5507 -4.9362 -0.3623 29 1 -0.3633 -0.5427 0.8726 30 1 -0.3633 1.0271 0.0337 31 1 -0.3634 -0.4844 -0.9064 32 1 2.4422 1.6197 -1.0277 33 1 1.6714 2.0647 0.5138 34 1 3.2130 1.1748 0.5138 35 1 3.2479 -1.1540 0.0924 36 1 3.9547 -3.8973 -1.2596 37 1 4.0833 -2.9051 0.2273 38 1 5.1574 -5.8826 -0.8529 39 1 5.9545 -5.0853 0.5245 40 1 5.1948 -6.6808 0.7377 41 1 1.6839 -5.9504 2.1327 42 1 2.8329 -7.2782 1.8412 43 1 0.6718 -7.5605 0.0449 44 1 -1.6320 -8.5736 1.0078 45 1 -0.4825 -9.9013 0.7175 46 1 -3.9181 -12.5573 4.6993 47 1 1.3467 -5.1531 -1.4108 48 1 0.6325 -5.0106 0.2204 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051900292.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:13 Heat of formation + Delta-G solvation = -92.066507 kcal Electronic energy + Delta-G solvation = -26598.821749 eV Core-core repulsion = 22778.786963 eV Total energy + Delta-G solvation = -3820.034786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40917 -40.57108 -39.23726 -36.34730 -35.91151 -34.59963 -33.89159 -32.02503 -30.55807 -29.02545 -28.66576 -27.70196 -27.18319 -26.50662 -23.30578 -22.10810 -21.29006 -20.85792 -19.85450 -19.08531 -18.31402 -17.76313 -17.41793 -17.01143 -16.89099 -16.52197 -16.38946 -15.85453 -15.48726 -15.24035 -15.16398 -14.77364 -14.68157 -14.50927 -14.19592 -14.04336 -13.81813 -13.56329 -13.45265 -13.22092 -13.18424 -13.14389 -13.03340 -12.89366 -12.63997 -12.62789 -12.57004 -12.41864 -11.90029 -11.85003 -11.69653 -11.60522 -11.15579 -10.96649 -10.67033 -10.30104 -10.21879 -10.16866 -9.59017 -8.68747 -8.36068 -6.14502 0.38084 1.25149 1.41466 1.45352 1.56216 1.57756 1.99656 2.22362 2.25768 2.28188 2.97910 3.28882 3.38813 3.47926 3.62434 3.77329 3.89585 3.96189 4.13614 4.18285 4.26242 4.31664 4.34545 4.48160 4.51415 4.55334 4.59837 4.63151 4.67029 4.68520 4.79177 4.83038 4.88289 4.89997 4.95030 5.05878 5.12339 5.15347 5.23606 5.33992 5.39215 5.40421 5.49772 5.52673 5.64518 6.18433 6.45210 6.55319 7.05010 7.16868 7.20237 8.73238 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014841 B = 0.002023 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.169544 B =13838.757946 C =15096.636973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.029 4.029 3 C -0.122 4.122 4 C -0.244 4.244 5 C 0.547 3.453 6 O -0.588 6.588 7 N -0.623 5.623 8 C 0.105 3.895 9 C -0.094 4.094 10 H 0.078 0.922 11 C -0.138 4.138 12 C -0.095 4.095 13 H 0.121 0.879 14 C 0.132 3.868 15 N -0.713 5.713 16 C 0.533 3.467 17 O -0.567 6.567 18 C -0.130 4.130 19 S -0.152 6.152 20 C -0.547 4.547 21 H 0.083 0.917 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 1.000 3.000 25 H -0.266 1.266 26 H -0.278 1.278 27 H -0.259 1.259 28 C 0.103 3.897 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.156 0.844 36 H 0.097 0.903 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.043 0.957 42 H 0.071 0.929 43 H 0.416 0.584 44 H 0.106 0.894 45 H 0.113 0.887 46 H 0.271 0.729 47 H 0.081 0.919 48 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.752 24.472 -16.314 35.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.031 4.031 3 C -0.179 4.179 4 C -0.264 4.264 5 C 0.341 3.659 6 O -0.471 6.471 7 N -0.355 5.355 8 C -0.017 4.017 9 C -0.113 4.113 10 H 0.096 0.904 11 C -0.195 4.195 12 C -0.114 4.114 13 H 0.139 0.861 14 C 0.009 3.991 15 N -0.367 5.367 16 C 0.319 3.681 17 O -0.445 6.445 18 C -0.282 4.282 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.101 0.899 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.191 1.191 26 H -0.203 1.203 27 H -0.183 1.183 28 C -0.020 4.020 29 H 0.075 0.925 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.173 0.827 36 H 0.115 0.885 37 H 0.120 0.880 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.089 0.911 43 H 0.253 0.747 44 H 0.124 0.876 45 H 0.132 0.868 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 20.601 24.553 -14.234 35.069 hybrid contribution -1.737 -1.015 -1.483 2.500 sum 18.864 23.537 -15.717 34.013 Atomic orbital electron populations 1.20991 0.92334 1.01777 1.02328 1.22912 0.96226 0.96061 0.87920 1.21082 1.00335 0.92313 1.04120 1.22448 1.01294 0.90191 1.12495 1.18890 0.86558 0.84491 0.75915 1.90791 1.15709 1.87424 1.53182 1.48765 1.09170 1.05445 1.72145 1.22913 0.78562 0.98530 1.01653 1.22275 0.94541 0.94108 1.00420 0.90405 1.21735 0.94637 1.00558 1.02586 1.22409 0.95136 0.96714 0.97155 0.86081 1.21427 0.88408 0.92373 0.96927 1.45771 1.35314 1.43970 1.11686 1.20072 0.82660 0.79876 0.85492 1.90689 1.66988 1.66927 1.19896 1.23378 0.99394 1.01516 1.03868 1.85568 1.41958 1.52913 1.12048 1.23204 1.19607 1.29372 0.97271 0.89916 1.26153 1.00193 0.97487 0.95422 1.70187 1.40244 1.37289 1.07033 0.84935 0.76668 0.78183 0.78069 1.19088 1.20281 1.18314 1.22137 0.96861 0.81630 1.01350 0.92481 0.90676 0.91932 0.88750 0.90155 0.89557 0.82665 0.88484 0.88033 0.90849 0.90808 0.92449 0.93850 0.91112 0.74747 0.87618 0.86833 0.91970 0.90126 0.93161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.23 8.34 71.24 0.59 -1.63 16 2 C -0.03 -0.42 6.11 -17.62 -0.11 -0.53 16 3 C -0.12 -0.78 9.99 71.23 0.71 -0.07 16 4 C -0.24 -3.76 9.14 23.43 0.21 -3.54 16 5 C 0.55 12.61 7.80 86.57 0.68 13.29 16 6 O -0.59 -18.71 13.44 -4.06 -0.05 -18.76 16 7 N -0.62 -11.12 3.29 -813.69 -2.68 -13.80 16 8 C 0.10 0.93 6.37 86.73 0.55 1.48 16 9 C -0.09 -0.93 3.21 -9.58 -0.03 -0.96 16 10 H 0.08 0.99 7.87 -2.38 -0.02 0.97 16 11 C -0.14 -0.83 9.16 71.98 0.66 -0.17 16 12 C -0.09 -1.28 2.65 -9.91 -0.03 -1.31 16 13 H 0.12 1.10 7.85 -2.39 -0.02 1.08 16 14 C 0.13 2.95 4.75 86.38 0.41 3.36 16 15 N -0.71 -18.48 5.28 -463.07 -2.45 -20.93 16 16 C 0.53 20.40 7.85 87.66 0.69 21.08 16 17 O -0.57 -27.20 15.86 -3.04 -0.05 -27.25 16 18 C -0.13 -5.34 6.16 71.23 0.44 -4.90 16 19 S -0.15 -8.67 20.57 -56.49 -1.16 -9.83 16 20 C -0.55 -31.89 9.50 67.95 0.65 -31.24 16 21 H 0.08 4.48 7.80 -2.91 -0.02 4.45 16 22 C 0.01 0.70 5.49 84.86 0.47 1.17 16 23 N -0.91 -56.91 13.22 21.65 0.29 -56.62 16 24 Si 1.00 44.40 29.55 68.60 2.03 46.43 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 28 C 0.10 1.87 6.31 86.52 0.55 2.41 16 29 H 0.06 1.38 7.31 -2.39 -0.02 1.36 16 30 H 0.07 1.02 7.93 -2.39 -0.02 1.00 16 31 H 0.06 1.43 7.15 -2.39 -0.02 1.42 16 32 H 0.09 0.39 8.14 -2.38 -0.02 0.37 16 33 H 0.08 0.43 8.03 -2.39 -0.02 0.41 16 34 H 0.09 0.32 8.06 -2.39 -0.02 0.30 16 35 H 0.16 1.31 6.62 -2.91 -0.02 1.29 16 36 H 0.10 0.51 8.02 -2.39 -0.02 0.49 16 37 H 0.10 0.55 6.60 -2.39 -0.02 0.53 16 38 H 0.07 0.28 8.10 -2.39 -0.02 0.26 16 39 H 0.07 0.29 8.14 -2.39 -0.02 0.27 16 40 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 42 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 43 H 0.42 7.90 8.32 -92.71 -0.77 7.13 16 44 H 0.11 3.99 8.14 -2.39 -0.02 3.98 16 45 H 0.11 4.11 8.14 -2.40 -0.02 4.09 16 46 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 47 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.05 1.26 7.48 -2.39 -0.02 1.24 16 Total: -1.00 -86.81 405.94 2.54 -84.27 By element: Atomic # 1 Polarization: 17.87 SS G_CDS: 0.18 Total: 18.05 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 6.44 Total: -1.56 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -4.84 Total: -91.35 kcal Atomic # 8 Polarization: -45.90 SS G_CDS: -0.10 Total: -46.01 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.83 kcal Total: -86.81 2.54 -84.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051900292.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.801 kcal (2) G-P(sol) polarization free energy of solvation -86.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds