Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50700 * 120.00132 * 2 1 4 4 C 1.32992 * 119.99999 * 179.97438 * 2 1 3 5 5 C 1.47100 * 120.00196 * 5.64232 * 4 2 1 6 6 O 1.21619 * 119.99793 * 354.73140 * 5 4 2 7 7 N 1.34781 * 120.00400 * 174.72972 * 5 4 2 8 8 C 1.46494 * 119.99977 * 179.97438 * 7 5 4 9 9 C 1.52999 * 109.47048 * 180.02562 * 8 7 5 10 10 H 1.09001 * 110.79678 * 51.71449 * 9 8 7 11 11 C 1.54594 * 110.83831 * 288.56755 * 9 8 7 12 12 N 1.48117 * 103.42703 * 204.44654 * 11 9 8 13 13 C 1.34778 * 127.03309 * 219.28780 * 12 11 9 14 14 O 1.21279 * 119.99830 * 359.70066 * 13 12 11 15 15 C 1.50691 * 119.99819 * 179.70740 * 13 12 11 16 16 S 1.81001 * 109.47173 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00241 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99795 * 0.02562 * 17 16 15 19 19 C 1.38800 * 119.99983 * 179.97438 * 17 16 15 20 20 N 1.31633 * 120.00094 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99979 * 180.02562 * 19 17 16 22 22 H 1.48493 * 109.47249 * 180.02562 * 21 19 17 23 23 H 1.48503 * 109.47080 * 300.00133 * 21 19 17 24 24 H 1.48500 * 109.47053 * 59.99967 * 21 19 17 25 25 C 1.47484 * 105.93192 * 39.01909 * 12 11 9 26 26 C 1.54003 * 107.08454 * 334.78542 * 25 12 11 27 27 H 1.09001 * 110.32330 * 242.41191 * 26 25 12 28 28 C 1.52996 * 110.32860 * 120.19777 * 26 25 12 29 29 H 1.09004 * 109.47129 * 238.21324 * 1 2 3 30 30 H 1.09000 * 109.46761 * 358.21407 * 1 2 3 31 31 H 1.09001 * 109.47089 * 118.21285 * 1 2 3 32 32 H 1.08997 * 109.47054 * 240.00221 * 3 2 1 33 33 H 1.09001 * 109.46965 * 0.02562 * 3 2 1 34 34 H 1.09000 * 109.46986 * 119.99682 * 3 2 1 35 35 H 1.08004 * 120.00105 * 185.63075 * 4 2 1 36 36 H 0.96999 * 119.99387 * 0.02562 * 7 5 4 37 37 H 1.09004 * 109.47119 * 60.00617 * 8 7 5 38 38 H 1.08996 * 109.47731 * 300.00517 * 8 7 5 39 39 H 1.09000 * 110.61472 * 85.92395 * 11 9 8 40 40 H 1.09004 * 110.54380 * 322.92740 * 11 9 8 41 41 H 1.08999 * 109.47569 * 59.99942 * 15 13 12 42 42 H 1.09001 * 109.47100 * 299.99835 * 15 13 12 43 43 H 0.97002 * 119.99482 * 359.97438 * 20 19 17 44 44 H 1.08997 * 109.90846 * 94.14084 * 25 12 11 45 45 H 1.08998 * 109.91784 * 215.41990 * 25 12 11 46 46 H 1.08995 * 109.47474 * 61.45289 * 28 26 25 47 47 H 1.09005 * 109.47150 * 181.45063 * 28 26 25 48 48 H 1.09007 * 109.47121 * 301.44865 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 1.4418 -2.4227 -0.1242 6 8 0.2257 -2.4271 -0.1312 7 7 2.1206 -3.5822 -0.2306 8 6 1.3934 -4.8479 -0.3542 9 6 2.3924 -6.0021 -0.4578 10 1 3.1189 -5.9591 0.3536 11 6 3.1074 -5.9891 -1.8284 12 7 3.5249 -7.3984 -2.0119 13 6 4.6852 -7.8394 -2.5370 14 8 5.5162 -7.0454 -2.9240 15 6 4.9497 -9.3191 -2.6433 16 16 6.5787 -9.5891 -3.3848 17 6 6.6254 -11.3505 -3.3880 18 1 5.7891 -11.9135 -3.0006 19 6 7.7364 -12.0143 -3.8893 20 7 8.7554 -11.3281 -4.3620 21 14 7.7856 -13.8817 -3.8934 22 1 9.0717 -14.3417 -4.4761 23 1 7.6663 -14.3830 -2.5007 24 1 6.6582 -14.4048 -4.7061 25 6 2.4140 -8.2201 -1.4963 26 6 1.6583 -7.3628 -0.4640 27 1 1.7093 -7.8250 0.5219 28 6 0.2008 -7.1785 -0.8910 29 1 -0.3633 -0.5413 0.8736 30 1 -0.3633 1.0272 0.0320 31 1 -0.3633 -0.4858 -0.9056 32 1 2.8871 1.3628 -0.8900 33 1 1.5522 2.1336 0.0005 34 1 2.8871 1.3628 0.8900 35 1 3.2481 -1.1540 0.0923 36 1 3.0905 -3.5787 -0.2246 37 1 0.7715 -4.8238 -1.2491 38 1 0.7624 -4.9917 0.5229 39 1 3.9758 -5.3309 -1.8021 40 1 2.4180 -5.6865 -2.6167 41 1 4.1854 -9.7809 -3.2684 42 1 4.9242 -9.7651 -1.6491 43 1 8.7297 -10.3584 -4.3601 44 1 1.7451 -8.4939 -2.3122 45 1 2.8067 -9.1172 -1.0178 46 1 -0.2891 -8.1509 -0.9407 47 1 -0.3138 -6.5492 -0.1648 48 1 0.1667 -6.7039 -1.8717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052043642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = -70.658441 kcal Electronic energy + Delta-G solvation = -26589.391801 eV Core-core repulsion = 22770.285339 eV Total energy + Delta-G solvation = -3819.106462 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.54934 -39.78859 -37.99612 -36.02645 -34.88520 -33.04380 -32.54848 -30.83630 -29.57202 -28.32327 -27.96840 -26.64887 -25.59670 -24.79639 -23.10320 -21.45943 -20.02413 -19.50487 -18.77780 -18.23591 -17.27412 -16.93639 -16.52526 -15.86624 -15.61578 -15.40717 -15.03020 -14.65164 -14.44734 -14.30702 -14.10380 -13.84991 -13.77416 -13.50136 -13.22109 -12.92180 -12.80443 -12.74437 -12.54149 -12.45685 -12.31877 -12.17277 -12.10848 -11.97814 -11.92398 -11.83607 -11.17522 -11.07529 -10.93610 -10.83857 -10.18958 -9.90476 -9.62391 -9.60553 -9.56131 -9.18196 -9.03582 -8.69091 -8.25073 -6.70161 -6.64287 -4.02532 1.02137 2.73258 2.89683 2.91337 3.02360 3.30924 3.36382 3.42322 3.56484 4.10566 4.16192 4.23886 4.36487 4.37616 4.44716 4.72325 4.80584 4.86970 4.93540 4.98872 5.05762 5.07029 5.13769 5.20311 5.24086 5.27899 5.31874 5.36496 5.41065 5.43695 5.50717 5.51903 5.59008 5.68157 5.70734 5.72992 5.76409 5.80129 5.97004 5.99110 6.09045 6.13656 6.18994 6.24079 7.23259 7.56522 7.89452 7.97524 8.40148 8.47844 9.24855 10.79560 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022731 B = 0.001871 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1231.509164 B =14961.464231 C =16016.686979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.030 4.030 3 C -0.129 4.129 4 C -0.241 4.241 5 C 0.546 3.454 6 O -0.544 6.544 7 N -0.730 5.730 8 C 0.133 3.867 9 C -0.114 4.114 10 H 0.091 0.909 11 C 0.112 3.888 12 N -0.628 5.628 13 C 0.551 3.449 14 O -0.517 6.517 15 C -0.124 4.124 16 S -0.116 6.116 17 C -0.608 4.608 18 H 0.066 0.934 19 C 0.036 3.964 20 N -0.883 5.883 21 Si 1.084 2.916 22 H -0.277 1.277 23 H -0.285 1.285 24 H -0.285 1.285 25 C 0.104 3.896 26 C -0.095 4.095 27 H 0.088 0.912 28 C -0.150 4.150 29 H 0.081 0.919 30 H 0.052 0.948 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.402 0.598 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.083 0.917 40 H 0.071 0.929 41 H 0.092 0.908 42 H 0.091 0.909 43 H 0.278 0.722 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.064 0.936 48 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.973 18.913 11.862 29.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.032 4.032 3 C -0.186 4.186 4 C -0.262 4.262 5 C 0.336 3.664 6 O -0.424 6.424 7 N -0.381 5.381 8 C 0.009 3.991 9 C -0.134 4.134 10 H 0.109 0.891 11 C -0.011 4.011 12 N -0.364 5.364 13 C 0.340 3.660 14 O -0.391 6.391 15 C -0.275 4.275 16 S 0.110 5.890 17 C -0.756 4.756 18 H 0.084 0.916 19 C -0.175 4.175 20 N -0.517 5.517 21 Si 0.910 3.090 22 H -0.202 1.202 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.020 4.020 26 C -0.114 4.114 27 H 0.107 0.893 28 C -0.208 4.208 29 H 0.100 0.900 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.095 0.905 35 H 0.144 0.856 36 H 0.236 0.764 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.102 0.898 40 H 0.089 0.911 41 H 0.110 0.890 42 H 0.110 0.890 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.096 0.904 46 H 0.080 0.920 47 H 0.083 0.917 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -17.547 18.729 10.792 27.841 hybrid contribution -1.440 0.070 0.962 1.733 sum -18.987 18.799 11.754 29.190 Atomic orbital electron populations 1.21089 0.90753 1.01137 1.04345 1.22604 0.96942 0.94515 0.89113 1.21052 1.00396 0.94091 1.03026 1.22328 1.00308 0.91980 1.11588 1.18542 0.87319 0.84209 0.76324 1.90777 1.13700 1.87400 1.50555 1.45965 1.10508 1.06344 1.75306 1.21423 0.93929 0.81150 1.02608 1.22532 0.97683 0.94364 0.98796 0.89112 1.22365 0.99143 0.84283 0.95354 1.48755 1.17103 1.07250 1.63337 1.19978 0.79253 0.90711 0.76049 1.90709 1.44092 1.57091 1.47184 1.23289 1.05348 0.93749 1.05157 1.84818 1.14575 1.09520 1.80074 1.23692 1.09447 0.90020 1.52396 0.91613 1.26062 0.91202 1.07623 0.92617 1.70804 1.30699 1.09733 1.40489 0.83329 0.76510 0.72500 0.76663 1.20250 1.21132 1.21119 1.22213 0.88509 0.94707 0.96559 1.22019 0.95281 0.94388 0.99736 0.89321 1.21965 0.94512 1.02399 1.01897 0.90006 0.92912 0.89819 0.90386 0.91132 0.90542 0.85614 0.76385 0.90712 0.90872 0.89840 0.91118 0.89017 0.89027 0.91001 0.91110 0.90362 0.91953 0.91696 0.92089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.92 8.34 36.01 0.30 -0.62 16 2 C -0.03 -0.21 6.11 -101.17 -0.62 -0.83 16 3 C -0.13 -0.59 10.07 36.01 0.36 -0.23 16 4 C -0.24 -1.86 9.67 -37.81 -0.37 -2.23 16 5 C 0.55 5.32 7.73 -12.66 -0.10 5.23 16 6 O -0.54 -6.79 13.10 5.26 0.07 -6.72 16 7 N -0.73 -5.82 5.47 -61.49 -0.34 -6.16 16 8 C 0.13 1.04 3.85 -4.05 -0.02 1.02 16 9 C -0.11 -0.91 2.99 -88.93 -0.27 -1.18 16 10 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 11 C 0.11 1.23 6.44 -2.31 -0.01 1.21 16 12 N -0.63 -8.70 3.29 -169.99 -0.56 -9.26 16 13 C 0.55 10.49 7.91 -10.99 -0.09 10.40 16 14 O -0.52 -11.77 16.07 5.56 0.09 -11.68 16 15 C -0.12 -2.55 5.23 36.00 0.19 -2.36 16 16 S -0.12 -3.14 19.60 -107.50 -2.11 -5.25 16 17 C -0.61 -17.50 9.50 30.94 0.29 -17.21 16 18 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 19 C 0.04 1.03 5.49 -17.43 -0.10 0.94 16 20 N -0.88 -27.46 13.67 55.49 0.76 -26.70 16 21 Si 1.08 24.84 29.92 -169.99 -5.09 19.75 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 23 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 24 H -0.28 -6.18 7.11 56.52 0.40 -5.77 16 25 C 0.10 1.06 6.42 -2.98 -0.02 1.04 16 26 C -0.09 -0.71 3.53 -89.25 -0.32 -1.03 16 27 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 28 C -0.15 -0.97 7.79 37.16 0.29 -0.68 16 29 H 0.08 0.74 7.31 -51.93 -0.38 0.36 16 30 H 0.05 0.31 7.70 -51.93 -0.40 -0.09 16 31 H 0.08 0.79 7.15 -51.93 -0.37 0.42 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.27 7.70 -51.93 -0.40 -0.13 16 34 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.13 0.72 8.06 -52.48 -0.42 0.30 16 36 H 0.40 2.57 8.45 -40.82 -0.35 2.22 16 37 H 0.07 0.64 6.80 -51.93 -0.35 0.29 16 38 H 0.07 0.59 7.37 -51.93 -0.38 0.20 16 39 H 0.08 1.00 7.85 -51.93 -0.41 0.59 16 40 H 0.07 0.75 7.93 -51.93 -0.41 0.33 16 41 H 0.09 1.77 8.14 -51.92 -0.42 1.34 16 42 H 0.09 1.75 7.91 -51.92 -0.41 1.33 16 43 H 0.28 8.82 7.12 -40.82 -0.29 8.53 16 44 H 0.07 0.68 7.68 -51.93 -0.40 0.28 16 45 H 0.08 0.80 7.54 -51.93 -0.39 0.40 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.06 0.39 6.76 -51.93 -0.35 0.04 16 48 H 0.06 0.42 7.51 -51.93 -0.39 0.03 16 LS Contribution 401.02 15.07 6.04 6.04 Total: -1.00 -36.49 401.02 -9.44 -45.93 By element: Atomic # 1 Polarization: 8.43 SS G_CDS: -7.85 Total: 0.58 kcal Atomic # 6 Polarization: -6.07 SS G_CDS: -0.46 Total: -6.53 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: -0.14 Total: -42.11 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: 0.16 Total: -18.41 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.09 Total: 19.75 kcal Atomic # 16 Polarization: -3.14 SS G_CDS: -2.11 Total: -5.25 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.49 -9.44 -45.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052043642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.732 kcal (2) G-P(sol) polarization free energy of solvation -36.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds