Wall clock time and date at job start Sat Apr 11 2020 06:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50700 * 120.00190 * 2 1 4 4 C 1.32991 * 119.99832 * 180.02562 * 2 1 3 5 5 C 1.47104 * 119.99958 * 359.97438 * 4 2 1 6 6 O 1.21613 * 120.00035 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99657 * 180.27470 * 5 4 2 8 8 C 1.46505 * 119.99724 * 179.72600 * 7 5 4 9 9 C 1.52999 * 109.47192 * 180.02562 * 8 7 5 10 10 H 1.09003 * 110.30375 * 307.17888 * 9 8 7 11 11 C 1.54393 * 110.34105 * 69.46236 * 9 8 7 12 12 N 1.48141 * 104.61988 * 95.00509 * 11 9 8 13 13 C 1.34772 * 127.83948 * 219.58420 * 12 11 9 14 14 O 1.21270 * 120.00259 * 0.02664 * 13 12 11 15 15 C 1.50703 * 120.00005 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47210 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00046 * 179.97438 * 16 15 13 18 18 H 1.08009 * 120.00020 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00171 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99784 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00180 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47244 * 89.99499 * 21 19 17 23 23 H 1.48498 * 109.47107 * 209.99724 * 21 19 17 24 24 H 1.48505 * 109.47056 * 329.99842 * 21 19 17 25 25 C 1.48151 * 104.32286 * 39.58236 * 12 11 9 26 26 C 1.54286 * 110.34427 * 184.99795 * 9 8 7 27 27 H 1.08994 * 110.33737 * 0.10702 * 26 9 8 28 28 C 1.52999 * 110.33989 * 122.26211 * 26 9 8 29 29 H 1.08997 * 109.47795 * 239.99946 * 1 2 3 30 30 H 1.09008 * 109.47370 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47333 * 119.99710 * 1 2 3 32 32 H 1.08999 * 109.47368 * 270.00176 * 3 2 1 33 33 H 1.08996 * 109.47045 * 29.99903 * 3 2 1 34 34 H 1.08998 * 109.47351 * 150.00045 * 3 2 1 35 35 H 1.08002 * 120.00252 * 180.02562 * 4 2 1 36 36 H 0.97000 * 120.00483 * 359.73032 * 7 5 4 37 37 H 1.09003 * 109.46699 * 299.99993 * 8 7 5 38 38 H 1.08993 * 109.47199 * 60.00006 * 8 7 5 39 39 H 1.09008 * 110.40868 * 213.79149 * 11 9 8 40 40 H 1.08999 * 110.40974 * 336.21692 * 11 9 8 41 41 H 1.09008 * 109.47142 * 300.00370 * 15 13 12 42 42 H 1.09004 * 109.47485 * 59.99876 * 15 13 12 43 43 H 0.97007 * 119.99957 * 179.97438 * 20 19 17 44 44 H 1.08998 * 110.40676 * 201.62996 * 25 12 11 45 45 H 1.08999 * 110.50527 * 79.24820 * 25 12 11 46 46 H 1.08993 * 109.47469 * 60.00014 * 28 26 9 47 47 H 1.08999 * 109.46978 * 180.02562 * 28 26 9 48 48 H 1.09006 * 109.46956 * 299.99917 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4363 -2.4257 -0.0005 6 8 0.2202 -2.4257 -0.0005 7 7 2.1102 -3.5929 0.0046 8 6 1.3777 -4.8616 0.0106 9 6 2.3718 -6.0246 0.0162 10 1 3.0872 -5.9145 -0.7988 11 6 3.1066 -6.0960 1.3722 12 7 2.3327 -7.0790 2.1655 13 6 2.0249 -7.0247 3.4765 14 8 2.3943 -6.0847 4.1476 15 6 1.2215 -8.1321 4.1084 16 16 0.9756 -7.7724 5.8652 17 6 0.0356 -9.1856 6.3382 18 1 -0.2118 -9.9396 5.6055 19 6 -0.3878 -9.3295 7.6522 20 7 -0.0867 -8.4104 8.5450 21 14 -1.3838 -10.8281 8.1539 22 1 -0.4649 -11.9088 8.5930 23 1 -2.2929 -10.4669 9.2711 24 1 -2.1853 -11.2999 6.9962 25 6 1.9739 -8.1354 1.1908 26 6 1.6250 -7.3693 -0.1034 27 1 0.5500 -7.2011 -0.1680 28 6 2.1160 -8.1432 -1.3284 29 1 -0.3634 -0.5138 0.8899 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 2.4422 1.6198 -1.0276 33 1 1.6715 2.0647 0.5138 34 1 3.2129 1.1748 0.5138 35 1 3.2519 -1.1518 -0.0001 36 1 3.0802 -3.5929 0.0043 37 1 0.7513 -4.9152 0.9011 38 1 0.7507 -4.9234 -0.8788 39 1 4.1306 -6.4425 1.2319 40 1 3.0978 -5.1218 1.8611 41 1 0.2532 -8.2066 3.6133 42 1 1.7571 -9.0756 4.0025 43 1 -0.3829 -8.5107 9.4632 44 1 1.1104 -8.6999 1.5428 45 1 2.8195 -8.8020 1.0215 46 1 3.1842 -8.3373 -1.2315 47 1 1.5795 -9.0894 -1.3995 48 1 1.9338 -7.5542 -2.2274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052043643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:24 Heat of formation + Delta-G solvation = -66.531784 kcal Electronic energy + Delta-G solvation = -26897.571330 eV Core-core repulsion = 23078.643813 eV Total energy + Delta-G solvation = -3818.927517 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.38284 -39.61660 -37.76682 -35.89616 -34.71545 -32.86601 -32.42089 -30.93284 -29.38122 -28.20132 -27.83098 -26.48906 -25.73864 -25.30205 -22.67067 -21.19544 -20.25458 -19.35102 -18.94912 -17.68835 -17.13976 -16.59736 -16.30304 -15.83636 -15.33963 -15.23725 -14.79903 -14.64533 -14.42928 -14.37225 -14.05079 -13.90439 -13.69424 -13.34706 -13.19227 -12.98950 -12.70851 -12.60549 -12.49512 -12.27482 -12.09423 -12.05081 -11.98272 -11.81862 -11.73943 -11.18870 -11.06325 -11.05092 -11.00691 -10.89762 -10.75008 -9.81009 -9.72446 -9.50613 -9.41144 -9.06039 -9.05308 -8.60704 -8.22700 -6.49568 -6.20825 -3.91523 1.16888 2.88507 3.01906 3.07937 3.18637 3.22904 3.26349 3.30965 3.60931 4.19890 4.24616 4.28085 4.38126 4.48939 4.56853 4.85548 4.95451 4.96976 5.02758 5.09721 5.13201 5.14283 5.17092 5.19620 5.31391 5.40579 5.44154 5.50789 5.52354 5.54774 5.62125 5.67739 5.68624 5.76923 5.80446 5.83062 5.87860 5.90406 5.99821 6.13533 6.21359 6.27881 6.30663 6.38981 7.37764 7.60135 7.70574 8.13984 8.35897 8.55323 9.24327 10.86643 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011393 B = 0.002418 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.104992 B =11577.533854 C =13151.735985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.031 4.031 3 C -0.127 4.127 4 C -0.238 4.238 5 C 0.544 3.456 6 O -0.540 6.540 7 N -0.728 5.728 8 C 0.129 3.871 9 C -0.112 4.112 10 H 0.093 0.907 11 C 0.107 3.893 12 N -0.629 5.629 13 C 0.554 3.446 14 O -0.515 6.515 15 C -0.146 4.146 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.072 0.928 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.105 3.895 26 C -0.099 4.099 27 H 0.086 0.914 28 C -0.142 4.142 29 H 0.085 0.915 30 H 0.051 0.949 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.125 0.875 36 H 0.399 0.601 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.639 9.931 -25.021 27.982 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.033 4.033 3 C -0.184 4.184 4 C -0.259 4.259 5 C 0.334 3.666 6 O -0.420 6.420 7 N -0.380 5.380 8 C 0.006 3.994 9 C -0.131 4.131 10 H 0.111 0.889 11 C -0.016 4.016 12 N -0.366 5.366 13 C 0.343 3.657 14 O -0.388 6.388 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.019 4.019 26 C -0.119 4.119 27 H 0.105 0.895 28 C -0.199 4.199 29 H 0.103 0.897 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.143 0.857 36 H 0.233 0.767 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.102 0.898 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.264 11.374 -23.675 27.252 hybrid contribution -0.439 -2.197 -0.458 2.287 sum 6.825 9.177 -24.133 26.706 Atomic orbital electron populations 1.21067 0.90739 1.01118 1.04502 1.22597 0.97004 0.94491 0.89207 1.21029 1.00191 0.94361 1.02815 1.22337 0.99977 0.91933 1.11685 1.18555 0.87420 0.84283 0.76308 1.90794 1.13751 1.87690 1.49754 1.45878 1.10196 1.05749 1.76147 1.21395 0.94105 0.81262 1.02646 1.22480 0.97835 0.94563 0.98244 0.88922 1.22314 0.94560 0.94819 0.89912 1.48976 1.55827 1.23862 1.07982 1.20000 0.79169 0.87362 0.79153 1.90711 1.52984 1.34717 1.60432 1.23503 1.01460 0.99212 1.05517 1.85416 1.70646 1.31972 0.95351 1.22852 1.39512 1.08141 0.97771 0.90934 1.24996 0.95995 0.97232 0.95397 1.70021 1.43765 1.33269 1.03211 0.86162 0.79505 0.81488 0.78302 1.20269 1.20737 1.19688 1.22465 1.01101 0.90723 0.87621 1.22098 1.00976 0.93740 0.95109 0.89533 1.21821 1.01368 1.00169 0.96568 0.89674 0.92952 0.89995 0.90353 0.90865 0.91052 0.85727 0.76666 0.91003 0.91294 0.91237 0.89743 0.89300 0.89305 0.92181 0.89830 0.90906 0.92243 0.92024 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 8.33 36.00 0.30 -0.88 16 2 C -0.03 -0.27 6.11 -101.17 -0.62 -0.89 16 3 C -0.13 -0.74 9.98 36.01 0.36 -0.38 16 4 C -0.24 -2.20 9.63 -37.81 -0.36 -2.57 16 5 C 0.54 6.49 7.73 -12.66 -0.10 6.40 16 6 O -0.54 -8.30 13.07 5.27 0.07 -8.23 16 7 N -0.73 -7.02 5.16 -61.49 -0.32 -7.34 16 8 C 0.13 1.33 4.78 -4.04 -0.02 1.31 16 9 C -0.11 -0.90 2.75 -89.22 -0.24 -1.15 16 10 H 0.09 0.54 7.71 -51.93 -0.40 0.14 16 11 C 0.11 1.18 6.47 -2.41 -0.02 1.17 16 12 N -0.63 -8.94 3.32 -169.31 -0.56 -9.51 16 13 C 0.55 10.88 7.93 -10.99 -0.09 10.79 16 14 O -0.51 -12.17 16.13 5.57 0.09 -12.08 16 15 C -0.15 -3.06 5.14 36.01 0.18 -2.87 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.40 9.50 30.94 0.29 -15.10 16 18 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 19 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 20 N -0.87 -26.44 13.22 55.49 0.73 -25.71 16 21 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 C 0.10 1.07 6.46 -2.41 -0.02 1.06 16 26 C -0.10 -0.79 3.31 -89.22 -0.30 -1.09 16 27 H 0.09 0.73 7.71 -51.93 -0.40 0.33 16 28 C -0.14 -0.82 8.92 37.16 0.33 -0.49 16 29 H 0.08 1.04 7.22 -51.93 -0.37 0.66 16 30 H 0.05 0.41 7.94 -51.92 -0.41 -0.01 16 31 H 0.08 0.90 7.22 -51.93 -0.37 0.53 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.38 8.05 -51.93 -0.42 -0.04 16 34 H 0.07 0.36 8.07 -51.93 -0.42 -0.06 16 35 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 36 H 0.40 2.73 8.40 -40.82 -0.34 2.39 16 37 H 0.07 0.99 8.13 -51.93 -0.42 0.57 16 38 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.66 8.14 -51.92 -0.42 0.23 16 40 H 0.08 1.09 7.31 -51.93 -0.38 0.71 16 41 H 0.09 1.73 7.95 -51.91 -0.41 1.32 16 42 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 43 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.08 0.88 7.30 -51.93 -0.38 0.50 16 45 H 0.07 0.64 7.83 -51.93 -0.41 0.24 16 46 H 0.06 0.32 8.10 -51.93 -0.42 -0.10 16 47 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 48 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 LS Contribution 406.84 15.07 6.13 6.13 Total: -1.00 -37.12 406.84 -9.54 -46.66 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -8.07 Total: 0.06 kcal Atomic # 6 Polarization: -2.30 SS G_CDS: -0.38 Total: -2.68 kcal Atomic # 7 Polarization: -42.41 SS G_CDS: -0.14 Total: -42.55 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: 0.16 Total: -20.31 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.12 -9.54 -46.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052043643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.868 kcal (2) G-P(sol) polarization free energy of solvation -37.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds