Wall clock time and date at job start Sat Apr 11 2020 06:03:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.50700 * 120.00190 * 2 1 4 4 C 1.32991 * 119.99832 * 180.02562 * 2 1 3 5 5 C 1.47104 * 119.99958 * 359.97438 * 4 2 1 6 6 O 1.21613 * 120.00035 * 0.02562 * 5 4 2 7 7 N 1.34777 * 119.99657 * 180.27470 * 5 4 2 8 8 C 1.46505 * 119.99724 * 179.72600 * 7 5 4 9 9 C 1.52999 * 109.47192 * 180.02562 * 8 7 5 10 10 H 1.09003 * 110.30375 * 307.17888 * 9 8 7 11 11 C 1.54393 * 110.34105 * 69.46236 * 9 8 7 12 12 N 1.48141 * 104.61988 * 95.00509 * 11 9 8 13 13 C 1.34772 * 127.83948 * 219.58420 * 12 11 9 14 14 O 1.21270 * 120.00259 * 0.02664 * 13 12 11 15 15 C 1.50703 * 120.00005 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47210 * 179.97438 * 15 13 12 17 17 C 1.76198 * 100.00046 * 179.97438 * 16 15 13 18 18 H 1.08009 * 120.00020 * 359.97438 * 17 16 15 19 19 C 1.38798 * 120.00171 * 180.02562 * 17 16 15 20 20 N 1.31625 * 119.99784 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00180 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.47244 * 89.99499 * 21 19 17 23 23 H 1.48498 * 109.47107 * 209.99724 * 21 19 17 24 24 H 1.48505 * 109.47056 * 329.99842 * 21 19 17 25 25 C 1.48151 * 104.32286 * 39.58236 * 12 11 9 26 26 C 1.54286 * 110.34427 * 184.99795 * 9 8 7 27 27 H 1.08994 * 110.33737 * 0.10702 * 26 9 8 28 28 C 1.52999 * 110.33989 * 122.26211 * 26 9 8 29 29 H 1.08997 * 109.47795 * 239.99946 * 1 2 3 30 30 H 1.09008 * 109.47370 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47333 * 119.99710 * 1 2 3 32 32 H 1.08999 * 109.47368 * 270.00176 * 3 2 1 33 33 H 1.08996 * 109.47045 * 29.99903 * 3 2 1 34 34 H 1.08998 * 109.47351 * 150.00045 * 3 2 1 35 35 H 1.08002 * 120.00252 * 180.02562 * 4 2 1 36 36 H 0.97000 * 120.00483 * 359.73032 * 7 5 4 37 37 H 1.09003 * 109.46699 * 299.99993 * 8 7 5 38 38 H 1.08993 * 109.47199 * 60.00006 * 8 7 5 39 39 H 1.09008 * 110.40868 * 213.79149 * 11 9 8 40 40 H 1.08999 * 110.40974 * 336.21692 * 11 9 8 41 41 H 1.09008 * 109.47142 * 300.00370 * 15 13 12 42 42 H 1.09004 * 109.47485 * 59.99876 * 15 13 12 43 43 H 0.97007 * 119.99957 * 179.97438 * 20 19 17 44 44 H 1.08998 * 110.40676 * 201.62996 * 25 12 11 45 45 H 1.08999 * 110.50527 * 79.24820 * 25 12 11 46 46 H 1.08993 * 109.47469 * 60.00014 * 28 26 9 47 47 H 1.08999 * 109.46978 * 180.02562 * 28 26 9 48 48 H 1.09006 * 109.46956 * 299.99917 * 28 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1719 -1.1518 -0.0005 5 6 1.4363 -2.4257 -0.0005 6 8 0.2202 -2.4257 -0.0005 7 7 2.1102 -3.5929 0.0046 8 6 1.3777 -4.8616 0.0106 9 6 2.3718 -6.0246 0.0162 10 1 3.0872 -5.9145 -0.7988 11 6 3.1066 -6.0960 1.3722 12 7 2.3327 -7.0790 2.1655 13 6 2.0249 -7.0247 3.4765 14 8 2.3943 -6.0847 4.1476 15 6 1.2215 -8.1321 4.1084 16 16 0.9756 -7.7724 5.8652 17 6 0.0356 -9.1856 6.3382 18 1 -0.2118 -9.9396 5.6055 19 6 -0.3878 -9.3295 7.6522 20 7 -0.0867 -8.4104 8.5450 21 14 -1.3838 -10.8281 8.1539 22 1 -0.4649 -11.9088 8.5930 23 1 -2.2929 -10.4669 9.2711 24 1 -2.1853 -11.2999 6.9962 25 6 1.9739 -8.1354 1.1908 26 6 1.6250 -7.3693 -0.1034 27 1 0.5500 -7.2011 -0.1680 28 6 2.1160 -8.1432 -1.3284 29 1 -0.3634 -0.5138 0.8899 30 1 -0.3634 1.0277 -0.0005 31 1 -0.3634 -0.5138 -0.8900 32 1 2.4422 1.6198 -1.0276 33 1 1.6715 2.0647 0.5138 34 1 3.2129 1.1748 0.5138 35 1 3.2519 -1.1518 -0.0001 36 1 3.0802 -3.5929 0.0043 37 1 0.7513 -4.9152 0.9011 38 1 0.7507 -4.9234 -0.8788 39 1 4.1306 -6.4425 1.2319 40 1 3.0978 -5.1218 1.8611 41 1 0.2532 -8.2066 3.6133 42 1 1.7571 -9.0756 4.0025 43 1 -0.3829 -8.5107 9.4632 44 1 1.1104 -8.6999 1.5428 45 1 2.8195 -8.8020 1.0215 46 1 3.1842 -8.3373 -1.2315 47 1 1.5795 -9.0894 -1.3995 48 1 1.9338 -7.5542 -2.2274 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052043643.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:23 Heat of formation + Delta-G solvation = -92.015132 kcal Electronic energy + Delta-G solvation = -26898.676371 eV Core-core repulsion = 23078.643813 eV Total energy + Delta-G solvation = -3820.032558 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.39286 -40.66642 -39.04062 -36.64747 -35.66812 -34.61667 -33.88376 -31.87816 -30.72461 -28.90730 -28.62211 -27.72999 -27.23424 -26.55473 -23.50228 -22.11600 -21.02222 -20.71821 -19.78691 -19.53964 -18.17323 -17.85239 -17.28540 -16.91279 -16.72871 -16.64245 -16.35917 -15.86693 -15.59579 -15.34313 -15.10573 -14.81922 -14.65640 -14.58595 -14.20574 -13.92040 -13.84292 -13.50263 -13.35544 -13.26497 -13.24093 -13.05105 -12.97907 -12.90977 -12.69493 -12.67902 -12.62080 -12.43394 -11.92825 -11.75732 -11.72953 -11.57512 -11.16734 -10.98640 -10.65415 -10.34516 -10.32145 -9.85069 -9.78884 -8.71699 -8.37229 -6.16535 0.40778 1.20821 1.40988 1.42473 1.52864 1.54330 2.05370 2.22925 2.24798 2.33562 2.96821 3.20153 3.44471 3.50589 3.64066 3.79960 3.87485 3.91750 4.14835 4.19351 4.27734 4.29002 4.36111 4.39380 4.51110 4.56144 4.63700 4.66180 4.67800 4.70772 4.77625 4.82018 4.89337 4.89525 4.99121 5.04366 5.14247 5.15697 5.24943 5.33453 5.38642 5.44188 5.52653 5.55479 5.61468 6.17019 6.40230 6.59601 7.03532 7.08255 7.28411 8.72246 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.011393 B = 0.002418 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2457.104992 B =11577.533854 C =13151.735985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.032 4.032 3 C -0.123 4.123 4 C -0.248 4.248 5 C 0.531 3.469 6 O -0.586 6.586 7 N -0.717 5.717 8 C 0.133 3.867 9 C -0.093 4.093 10 H 0.133 0.867 11 C 0.102 3.898 12 N -0.623 5.623 13 C 0.550 3.450 14 O -0.569 6.569 15 C -0.119 4.119 16 S -0.153 6.153 17 C -0.545 4.545 18 H 0.083 0.917 19 C 0.012 3.988 20 N -0.912 5.912 21 Si 1.001 2.999 22 H -0.265 1.265 23 H -0.277 1.277 24 H -0.258 1.258 25 C 0.095 3.905 26 C -0.092 4.092 27 H 0.078 0.922 28 C -0.135 4.135 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.096 0.904 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.156 0.844 36 H 0.415 0.585 37 H 0.028 0.972 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.272 0.728 44 H 0.080 0.920 45 H 0.100 0.900 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.944 8.645 -27.948 30.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.034 4.034 3 C -0.179 4.179 4 C -0.269 4.269 5 C 0.322 3.678 6 O -0.469 6.469 7 N -0.369 5.369 8 C 0.009 3.991 9 C -0.112 4.112 10 H 0.151 0.849 11 C -0.021 4.021 12 N -0.358 5.358 13 C 0.339 3.661 14 O -0.448 6.448 15 C -0.270 4.270 16 S 0.074 5.926 17 C -0.693 4.693 18 H 0.101 0.899 19 C -0.193 4.193 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.191 1.191 23 H -0.203 1.203 24 H -0.182 1.182 25 C -0.027 4.027 26 C -0.112 4.112 27 H 0.096 0.904 28 C -0.192 4.192 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.085 0.915 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.101 0.899 35 H 0.174 0.826 36 H 0.252 0.748 37 H 0.046 0.954 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.126 0.874 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.118 0.882 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 8.617 10.060 -26.681 29.789 hybrid contribution -0.826 -1.753 0.315 1.964 sum 7.792 8.307 -26.366 28.721 Atomic orbital electron populations 1.20984 0.92218 1.01740 1.02368 1.22904 0.96342 0.96068 0.88108 1.21078 1.00240 0.92470 1.04156 1.22518 1.01331 0.90609 1.12416 1.19183 0.87183 0.85747 0.75654 1.90774 1.15757 1.88394 1.51982 1.45805 1.10991 1.05066 1.75022 1.21297 0.94568 0.82553 1.00667 1.22447 0.97599 0.93574 0.97609 0.84900 1.22617 0.95968 0.93123 0.90354 1.48916 1.54573 1.25577 1.06731 1.19704 0.79182 0.86340 0.80909 1.90683 1.55353 1.36381 1.62345 1.23293 1.02834 1.00637 1.00272 1.85602 1.71249 1.33630 1.02104 1.23179 1.39573 1.08065 0.98506 0.89903 1.26173 0.97066 1.00788 0.95237 1.70190 1.45169 1.35723 1.03721 0.84923 0.77764 0.76895 0.78203 1.19050 1.20255 1.18184 1.22862 1.02151 0.90292 0.87367 1.22077 1.00666 0.93412 0.95080 0.90362 1.21792 1.02107 1.00049 0.95296 0.92675 0.90772 0.91549 0.88575 0.90226 0.89899 0.82637 0.74803 0.95390 0.90960 0.88316 0.92058 0.88017 0.87372 0.91937 0.90180 0.88227 0.90917 0.91598 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.44 8.33 71.23 0.59 -1.84 16 2 C -0.03 -0.55 6.11 -17.62 -0.11 -0.66 16 3 C -0.12 -1.15 9.98 71.24 0.71 -0.43 16 4 C -0.25 -4.40 9.63 23.43 0.23 -4.18 16 5 C 0.53 12.98 7.73 86.57 0.67 13.65 16 6 O -0.59 -19.24 13.07 -4.07 -0.05 -19.29 16 7 N -0.72 -13.50 5.16 -466.70 -2.41 -15.91 16 8 C 0.13 2.70 4.78 86.38 0.41 3.12 16 9 C -0.09 -1.27 2.75 -9.88 -0.03 -1.30 16 10 H 0.13 0.89 7.71 -2.39 -0.02 0.87 16 11 C 0.10 2.07 6.47 86.54 0.56 2.63 16 12 N -0.62 -17.19 3.32 -807.96 -2.68 -19.87 16 13 C 0.55 22.08 7.93 87.66 0.70 22.77 16 14 O -0.57 -28.28 16.13 -3.00 -0.05 -28.33 16 15 C -0.12 -5.05 5.14 71.24 0.37 -4.68 16 16 S -0.15 -8.84 20.57 -56.49 -1.16 -10.01 16 17 C -0.55 -31.91 9.50 67.95 0.65 -31.27 16 18 H 0.08 4.49 7.80 -2.91 -0.02 4.47 16 19 C 0.01 0.70 5.49 84.86 0.47 1.17 16 20 N -0.91 -57.13 13.22 21.65 0.29 -56.84 16 21 Si 1.00 44.31 29.55 68.60 2.03 46.33 16 22 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 23 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 24 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 25 C 0.10 1.71 6.46 86.53 0.56 2.27 16 26 C -0.09 -1.21 3.31 -9.89 -0.03 -1.25 16 27 H 0.08 1.20 7.71 -2.39 -0.02 1.18 16 28 C -0.14 -0.98 8.92 71.98 0.64 -0.33 16 29 H 0.05 1.48 7.22 -2.39 -0.02 1.46 16 30 H 0.07 1.15 7.94 -2.38 -0.02 1.13 16 31 H 0.07 1.57 7.22 -2.39 -0.02 1.56 16 32 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 33 H 0.08 0.66 8.05 -2.39 -0.02 0.64 16 34 H 0.08 0.62 8.07 -2.39 -0.02 0.60 16 35 H 0.16 1.69 8.06 -2.91 -0.02 1.66 16 36 H 0.42 4.97 8.40 -92.71 -0.78 4.19 16 37 H 0.03 0.82 8.13 -2.39 -0.02 0.80 16 38 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.10 1.52 8.14 -2.38 -0.02 1.50 16 40 H 0.06 1.57 7.31 -2.39 -0.02 1.56 16 41 H 0.10 4.00 7.95 -2.39 -0.02 3.98 16 42 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 43 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 44 H 0.08 1.52 7.30 -2.39 -0.02 1.51 16 45 H 0.10 1.35 7.83 -2.39 -0.02 1.34 16 46 H 0.07 0.39 8.10 -2.39 -0.02 0.37 16 47 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 48 H 0.07 0.42 8.14 -2.38 -0.02 0.40 16 Total: -1.00 -87.78 406.84 2.51 -85.27 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: 0.17 Total: 18.96 kcal Atomic # 6 Polarization: -6.71 SS G_CDS: 6.38 Total: -0.33 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -4.80 Total: -92.61 kcal Atomic # 8 Polarization: -47.52 SS G_CDS: -0.10 Total: -47.62 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.33 kcal Atomic # 16 Polarization: -8.84 SS G_CDS: -1.16 Total: -10.01 kcal Total: -87.78 2.51 -85.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052043643.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.747 kcal (2) G-P(sol) polarization free energy of solvation -87.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds