Wall clock time and date at job start Sat Apr 11 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50693 * 120.00300 * 2 1 4 4 C 1.53006 * 109.47129 * 124.99992 * 3 2 1 5 5 C 1.50699 * 109.46853 * 179.97438 * 4 3 2 6 6 O 1.21281 * 120.00439 * 0.02562 * 5 4 3 7 7 N 1.34782 * 119.99967 * 180.02562 * 5 4 3 8 8 C 1.46493 * 120.00095 * 180.02562 * 7 5 4 9 9 C 1.53006 * 109.46981 * 179.97438 * 8 7 5 10 10 H 1.08997 * 110.36975 * 55.74001 * 9 8 7 11 11 C 1.54004 * 110.32844 * 293.54767 * 9 8 7 12 12 N 1.47480 * 107.08278 * 242.41223 * 11 9 8 13 13 C 1.34777 * 127.03464 * 154.51345 * 12 11 9 14 14 O 1.21278 * 119.99854 * 0.02562 * 13 12 11 15 15 C 1.50703 * 120.00161 * 180.02562 * 13 12 11 16 16 S 1.81002 * 109.47178 * 180.02562 * 15 13 12 17 17 C 1.76198 * 100.00092 * 180.02562 * 16 15 13 18 18 H 1.08004 * 120.00019 * 0.02562 * 17 16 15 19 19 C 1.38795 * 119.99810 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00234 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99664 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47231 * 60.00264 * 21 19 17 23 23 H 1.48505 * 109.47271 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.47260 * 299.99689 * 21 19 17 25 25 C 1.48122 * 105.93303 * 334.78156 * 12 11 9 26 26 C 1.54586 * 103.42537 * 39.02304 * 25 12 11 27 27 H 1.08998 * 110.57866 * 81.16686 * 26 25 12 28 28 C 1.52998 * 110.99277 * 204.37732 * 26 25 12 29 29 H 1.08004 * 120.00133 * 180.02562 * 1 2 3 30 30 H 1.08000 * 119.99853 * 359.97438 * 1 2 3 31 31 H 1.08005 * 119.99613 * 180.02562 * 2 1 3 32 32 H 1.09003 * 109.47058 * 5.00191 * 3 2 1 33 33 H 1.08999 * 109.47386 * 245.00311 * 3 2 1 34 34 H 1.08999 * 109.46793 * 60.00634 * 4 3 2 35 35 H 1.08992 * 109.47127 * 300.00064 * 4 3 2 36 36 H 0.97002 * 119.99562 * 0.02562 * 7 5 4 37 37 H 1.08997 * 109.47631 * 60.00300 * 8 7 5 38 38 H 1.09002 * 109.47607 * 299.99695 * 8 7 5 39 39 H 1.09000 * 109.91137 * 123.05252 * 11 9 8 40 40 H 1.08993 * 109.91098 * 1.77111 * 11 9 8 41 41 H 1.09002 * 109.47152 * 60.00245 * 15 13 12 42 42 H 1.09001 * 109.46980 * 300.00345 * 15 13 12 43 43 H 0.97005 * 119.99806 * 179.97438 * 20 19 17 44 44 H 1.09004 * 110.66318 * 157.51126 * 25 12 11 45 45 H 1.09006 * 110.65815 * 280.62189 * 25 12 11 46 46 H 1.08997 * 109.47979 * 173.65406 * 28 26 25 47 47 H 1.08999 * 109.46939 * 293.65464 * 28 26 25 48 48 H 1.09001 * 109.47193 * 53.64976 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 6 3.0351 1.3329 1.1817 5 6 3.7891 2.6377 1.1812 6 8 3.5706 3.4642 0.3209 7 7 4.7063 2.8864 2.1370 8 6 5.4388 4.1550 2.1370 9 6 6.4105 4.1829 3.3186 10 1 7.0745 3.3192 3.2842 11 6 5.6347 4.2087 4.6487 12 7 5.9767 5.4737 5.3252 13 6 5.2289 6.1400 6.2270 14 8 4.1478 5.7026 6.5598 15 6 5.7360 7.4284 6.8219 16 16 4.5144 8.0756 7.9902 17 6 5.3410 9.5396 8.5176 18 1 6.3126 9.7859 8.1153 19 6 4.7431 10.3767 9.4493 20 7 3.5584 10.0773 9.9386 21 14 5.6191 11.9291 10.0079 22 1 5.8604 12.8100 8.8370 23 1 4.7761 12.6436 11.0000 24 1 6.9175 11.5677 10.6315 25 6 7.3074 5.8657 4.8059 26 6 7.2321 5.4927 3.3076 27 1 6.7132 6.2689 2.7451 28 6 8.6289 5.2513 2.7320 29 1 -0.5400 -0.9353 0.0004 30 1 -0.5400 0.9353 0.0004 31 1 1.8499 -0.9354 -0.0004 32 1 1.3586 2.1316 0.0896 33 1 2.6213 1.4025 -0.9314 34 1 3.7400 0.5064 1.0920 35 1 2.4773 1.2355 2.1130 36 1 4.8813 2.2252 2.8249 37 1 4.7341 4.9816 2.2271 38 1 5.9963 4.2527 1.2054 39 1 5.9331 3.3635 5.2689 40 1 4.5630 4.1697 4.4541 41 1 5.9000 8.1559 6.0269 42 1 6.6748 7.2429 7.3438 43 1 3.1407 10.6622 10.5900 44 1 7.4673 6.9372 4.9271 45 1 8.0959 5.2996 5.3019 46 1 8.5421 4.8819 1.7102 47 1 9.1893 6.1862 2.7339 48 1 9.1507 4.5137 3.3418 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052043684.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:26 Heat of formation + Delta-G solvation = -93.797439 kcal Electronic energy + Delta-G solvation = -26423.884072 eV Core-core repulsion = 22603.774228 eV Total energy + Delta-G solvation = -3820.109844 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.37971 -40.63249 -39.01367 -36.41694 -35.84121 -34.60449 -33.91776 -32.16766 -31.53606 -30.28045 -27.75408 -27.24491 -26.97540 -25.06542 -22.95114 -21.74415 -20.80681 -20.70396 -20.65493 -19.59678 -18.27503 -17.80248 -17.41525 -16.95888 -16.89719 -16.80147 -16.63553 -15.98088 -15.88332 -15.53311 -15.13656 -14.94782 -14.62184 -14.51441 -14.16212 -14.04744 -13.88975 -13.52198 -13.45943 -13.27295 -13.15496 -13.04752 -12.97511 -12.87728 -12.64361 -12.60353 -12.01601 -11.96377 -11.91339 -11.80077 -11.74496 -11.59272 -11.14341 -10.99203 -10.92413 -10.31014 -10.22659 -10.12208 -9.76945 -8.70318 -8.35964 -6.15234 1.21810 1.38861 1.43242 1.43527 1.53056 1.53995 1.63841 2.05558 2.22286 2.26034 2.98078 3.20696 3.43262 3.46283 3.64328 3.76129 3.86130 3.97545 4.12815 4.18641 4.21071 4.31719 4.33026 4.39141 4.41023 4.45729 4.53020 4.61589 4.63271 4.68225 4.72659 4.82881 4.88874 4.93986 5.03622 5.07611 5.11841 5.20379 5.23570 5.34800 5.39634 5.42176 5.53261 5.75276 5.90956 6.17888 6.37760 6.53473 7.04803 7.08440 7.25327 8.73098 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014173 B = 0.002020 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.088429 B =13859.051246 C =15284.975917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.155 4.155 3 C -0.081 4.081 4 C -0.128 4.128 5 C 0.505 3.495 6 O -0.591 6.591 7 N -0.720 5.720 8 C 0.132 3.868 9 C -0.091 4.091 10 H 0.131 0.869 11 C 0.103 3.897 12 N -0.621 5.621 13 C 0.548 3.452 14 O -0.569 6.569 15 C -0.120 4.120 16 S -0.152 6.152 17 C -0.547 4.547 18 H 0.083 0.917 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 1.000 3.000 22 H -0.262 1.262 23 H -0.279 1.279 24 H -0.260 1.260 25 C 0.096 3.904 26 C -0.093 4.093 27 H 0.075 0.925 28 C -0.135 4.135 29 H 0.111 0.889 30 H 0.087 0.913 31 H 0.130 0.870 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.417 0.583 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.055 0.945 41 H 0.104 0.896 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.084 0.916 45 H 0.101 0.899 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.838 -21.127 -19.917 30.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.173 4.173 3 C -0.118 4.118 4 C -0.168 4.168 5 C 0.293 3.707 6 O -0.472 6.472 7 N -0.373 5.373 8 C 0.007 3.993 9 C -0.110 4.110 10 H 0.149 0.851 11 C -0.020 4.020 12 N -0.356 5.356 13 C 0.336 3.664 14 O -0.447 6.447 15 C -0.271 4.271 16 S 0.075 5.925 17 C -0.695 4.695 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.821 3.179 22 H -0.187 1.187 23 H -0.204 1.204 24 H -0.185 1.185 25 C -0.026 4.026 26 C -0.113 4.113 27 H 0.093 0.907 28 C -0.192 4.192 29 H 0.130 0.870 30 H 0.106 0.894 31 H 0.148 0.852 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.146 0.854 35 H 0.126 0.874 36 H 0.254 0.746 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.122 0.878 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.102 0.898 45 H 0.119 0.881 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 8.906 -21.097 -19.840 30.299 hybrid contribution 0.951 1.460 0.504 1.814 sum 9.857 -19.637 -19.336 29.268 Atomic orbital electron populations 1.24051 0.96365 1.02312 1.01003 1.23020 0.96028 0.98263 0.99976 1.20462 0.97695 0.95572 0.98112 1.21651 0.99201 0.94496 1.01422 1.21373 0.79317 0.89634 0.80334 1.90702 1.67019 1.50012 1.39438 1.45975 1.40491 1.20058 1.30753 1.21322 0.93573 0.85627 0.98728 1.22411 0.96385 1.01072 0.91115 0.85125 1.22292 1.00012 0.86171 0.93516 1.48724 1.20561 1.24831 1.41475 1.19749 0.83550 0.84733 0.78326 1.90687 1.23146 1.69243 1.61662 1.23299 1.04027 0.97159 1.02596 1.85599 1.27335 1.28338 1.51216 1.23156 1.07371 1.08996 1.29943 0.89848 1.26152 0.95720 1.02117 0.95176 1.70181 1.16246 1.39186 1.29145 0.84990 0.78162 0.76508 0.78248 1.18681 1.20375 1.18460 1.22921 0.83522 1.02236 0.93938 1.22193 0.98120 0.96237 0.94718 0.90680 1.21721 0.93125 1.02931 1.01466 0.87040 0.89425 0.85178 0.93112 0.91155 0.85412 0.87362 0.74583 0.94448 0.90501 0.89633 0.92666 0.87794 0.87353 0.91958 0.89791 0.88132 0.91281 0.91694 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.50 14.32 67.78 0.97 -1.53 16 2 C -0.16 -1.79 9.52 25.65 0.24 -1.55 16 3 C -0.08 -1.21 4.95 29.85 0.15 -1.07 16 4 C -0.13 -1.45 5.68 29.85 0.17 -1.28 16 5 C 0.51 9.46 7.83 87.66 0.69 10.15 16 6 O -0.59 -17.03 15.98 -3.03 -0.05 -17.08 16 7 N -0.72 -9.98 5.28 -463.06 -2.45 -12.42 16 8 C 0.13 2.12 4.75 86.38 0.41 2.53 16 9 C -0.09 -1.08 2.65 -9.90 -0.03 -1.10 16 10 H 0.13 0.71 7.85 -2.39 -0.02 0.69 16 11 C 0.10 2.03 6.31 86.53 0.55 2.58 16 12 N -0.62 -16.51 3.29 -810.09 -2.67 -19.18 16 13 C 0.55 21.31 7.91 87.66 0.69 22.01 16 14 O -0.57 -27.56 16.20 -3.02 -0.05 -27.61 16 15 C -0.12 -4.91 5.09 71.24 0.36 -4.55 16 16 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 17 C -0.55 -31.49 9.50 67.95 0.65 -30.84 16 18 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 19 C 0.01 0.75 5.49 84.86 0.47 1.22 16 20 N -0.91 -56.44 13.22 21.65 0.29 -56.16 16 21 Si 1.00 43.66 29.55 68.60 2.03 45.69 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 23 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 25 C 0.10 1.63 6.38 86.61 0.55 2.18 16 26 C -0.09 -1.17 3.18 -9.70 -0.03 -1.20 16 27 H 0.07 1.18 7.86 -2.39 -0.02 1.16 16 28 C -0.13 -0.97 9.17 71.98 0.66 -0.31 16 29 H 0.11 1.05 8.06 -2.91 -0.02 1.02 16 30 H 0.09 1.23 7.84 -2.91 -0.02 1.21 16 31 H 0.13 0.95 8.06 -2.91 -0.02 0.93 16 32 H 0.05 1.00 7.75 -2.39 -0.02 0.98 16 33 H 0.07 1.17 8.10 -2.39 -0.02 1.15 16 34 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.11 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.42 3.09 8.32 -92.71 -0.77 2.32 16 37 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.05 1.39 7.48 -2.39 -0.02 1.37 16 41 H 0.10 3.91 7.90 -2.39 -0.02 3.89 16 42 H 0.11 3.99 8.14 -2.39 -0.02 3.97 16 43 H 0.27 15.62 8.31 -92.70 -0.77 14.85 16 44 H 0.08 1.50 7.23 -2.38 -0.02 1.48 16 45 H 0.10 1.27 8.02 -2.38 -0.02 1.25 16 46 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 47 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 48 H 0.07 0.36 8.11 -2.39 -0.02 0.34 16 Total: -1.00 -86.32 411.99 2.60 -83.71 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.16 Total: 15.59 kcal Atomic # 6 Polarization: -9.26 SS G_CDS: 6.50 Total: -2.76 kcal Atomic # 7 Polarization: -82.93 SS G_CDS: -4.83 Total: -87.76 kcal Atomic # 8 Polarization: -44.59 SS G_CDS: -0.10 Total: -44.69 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -86.32 2.60 -83.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052043684.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.083 kcal (2) G-P(sol) polarization free energy of solvation -86.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.399 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds