Wall clock time and date at job start Sat Apr 11 2020 06:01:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46840 * 2 1 4 4 H 1.08992 * 109.47487 * 305.00029 * 3 2 1 5 5 C 1.53006 * 109.46852 * 65.00405 * 3 2 1 6 6 C 1.50701 * 109.46905 * 184.99791 * 3 2 1 7 7 O 1.21275 * 120.00230 * 334.63191 * 6 3 2 8 8 N 1.34775 * 119.99724 * 154.62675 * 6 3 2 9 9 C 1.47164 * 120.71174 * 5.14330 * 8 6 3 10 10 C 1.54317 * 107.80891 * 132.67897 * 9 8 6 11 11 H 1.08994 * 112.53924 * 182.37904 * 10 9 8 12 12 C 1.54554 * 107.98161 * 306.73530 * 10 9 8 13 13 C 1.54284 * 104.84429 * 89.00809 * 12 10 9 14 14 C 1.54544 * 104.85241 * 0.02562 * 13 12 10 15 15 H 1.08998 * 112.68886 * 146.67887 * 14 13 12 16 16 C 1.47167 * 120.71125 * 185.41548 * 8 6 3 17 17 N 1.48307 * 107.10082 * 58.61402 * 10 9 8 18 18 C 1.34775 * 128.07673 * 106.54718 * 17 10 9 19 19 O 1.21282 * 120.00033 * 180.02562 * 18 17 10 20 20 C 1.50704 * 119.99884 * 0.04403 * 18 17 10 21 21 S 1.80996 * 109.46929 * 180.02562 * 20 18 17 22 22 C 1.76209 * 99.99879 * 179.97438 * 21 20 18 23 23 H 1.07995 * 119.99809 * 0.02562 * 22 21 20 24 24 C 1.38800 * 120.00050 * 179.97438 * 22 21 20 25 25 N 1.31631 * 119.99932 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00093 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46961 * 60.00134 * 26 24 22 28 28 H 1.48494 * 109.47480 * 180.02562 * 26 24 22 29 29 H 1.48504 * 109.46944 * 300.00530 * 26 24 22 30 30 H 1.08997 * 109.47063 * 299.99690 * 1 2 3 31 31 H 1.09005 * 109.47017 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47519 * 60.00080 * 1 2 3 33 33 H 1.08992 * 109.47359 * 120.00609 * 2 1 3 34 34 H 1.08997 * 109.47063 * 240.00310 * 2 1 3 35 35 H 1.09002 * 109.46713 * 295.03558 * 5 3 2 36 36 H 1.09000 * 109.46943 * 55.03556 * 5 3 2 37 37 H 1.08999 * 109.46852 * 175.03692 * 5 3 2 38 38 H 1.08998 * 109.75119 * 252.38713 * 9 8 6 39 39 H 1.08996 * 109.74718 * 13.11730 * 9 8 6 40 40 H 1.09001 * 110.36378 * 207.85036 * 12 10 9 41 41 H 1.08997 * 110.36541 * 330.17073 * 12 10 9 42 42 H 1.08994 * 110.36675 * 241.16668 * 13 12 10 43 43 H 1.09008 * 110.36226 * 118.84779 * 13 12 10 44 44 H 1.09001 * 109.74608 * 346.88524 * 16 8 6 45 45 H 1.09004 * 109.74884 * 107.61798 * 16 8 6 46 46 H 1.09000 * 109.46695 * 300.00017 * 20 18 17 47 47 H 1.08993 * 109.47372 * 59.99611 * 20 18 17 48 48 H 0.96996 * 119.99898 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6352 2.1265 1.3075 6 6 3.5419 1.4443 -0.1238 7 8 4.1821 0.4834 0.2471 8 7 4.1736 2.5139 -0.6468 9 6 3.4252 3.7314 -0.9977 10 6 4.1946 4.9401 -0.4245 11 1 3.6829 5.8852 -0.6057 12 6 4.4316 4.6843 1.0812 13 6 5.7725 3.9240 1.1467 14 6 6.2243 3.7900 -0.3252 15 1 7.3079 3.8246 -0.4372 16 6 5.6256 2.4870 -0.8847 17 7 5.5526 4.9148 -1.0201 18 6 6.0582 5.7248 -1.9712 19 8 7.1986 5.5717 -2.3547 20 6 5.2067 6.8210 -2.5581 21 16 6.1616 7.7269 -3.8005 22 6 4.9591 8.9114 -4.3066 23 1 3.9773 8.9100 -3.8569 24 6 5.2742 9.8467 -5.2826 25 7 6.4711 9.8485 -5.8304 26 14 3.9993 11.1018 -5.8197 27 1 3.5923 11.9246 -4.6524 28 1 4.5799 11.9803 -6.8667 29 1 2.8118 10.3979 -6.3672 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 0.5490 2.2040 1.3558 36 1 1.9955 1.5386 2.1517 37 1 2.0727 3.1241 1.3462 38 1 3.3509 3.8186 -2.0816 39 1 2.4271 3.6887 -0.5618 40 1 4.5047 5.6292 1.6196 41 1 3.6286 4.0731 1.4931 42 1 5.6288 2.9390 1.5907 43 1 6.5049 4.4951 1.7174 44 1 6.0665 1.6304 -0.3749 45 1 5.8224 2.4210 -1.9548 46 1 4.3242 6.3845 -3.0257 47 1 4.8982 7.5044 -1.7670 48 1 6.6912 10.5019 -6.5127 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001758647399.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:01:38 Heat of formation + Delta-G solvation = -66.720053 kcal Electronic energy + Delta-G solvation = -28455.420231 eV Core-core repulsion = 24636.484550 eV Total energy + Delta-G solvation = -3818.935681 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.45690 -39.51916 -37.80010 -35.81023 -34.44248 -32.46886 -32.28735 -31.60253 -30.06759 -28.98110 -27.09319 -25.65426 -25.45208 -24.89120 -22.57530 -21.63287 -20.87696 -19.82438 -18.40327 -17.93119 -17.33383 -16.53310 -16.43098 -16.11078 -15.39817 -15.16974 -15.02493 -14.83842 -14.47006 -14.15964 -13.99398 -13.84356 -13.78597 -13.51290 -13.20643 -12.91866 -12.82788 -12.70190 -12.57380 -12.40719 -12.09362 -11.94004 -11.88584 -11.60564 -11.45624 -11.26215 -11.08178 -11.07425 -11.07147 -11.03841 -10.80286 -10.71764 -9.89067 -9.86483 -9.47523 -9.29690 -9.09625 -8.44538 -8.28664 -6.55050 -6.25257 -3.96645 2.37604 2.57752 2.84577 2.97034 3.20323 3.21524 3.26108 3.51445 4.03487 4.15586 4.25141 4.34250 4.40875 4.48902 4.55639 4.62804 4.76951 4.87111 4.92533 5.00139 5.02120 5.08306 5.09917 5.10601 5.24646 5.31853 5.35048 5.37143 5.40847 5.46172 5.54193 5.57219 5.60634 5.62757 5.68495 5.71269 5.78123 5.82740 5.88370 5.94114 5.98347 6.04964 6.21261 6.28923 7.11857 7.54996 7.63838 7.92598 8.30826 8.47030 9.19750 10.82094 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016034 B = 0.002718 C = 0.002489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.897377 B =10298.281797 C =11248.525589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.106 4.106 3 C -0.112 4.112 4 H 0.093 0.907 5 C -0.147 4.147 6 C 0.521 3.479 7 O -0.542 6.542 8 N -0.606 5.606 9 C 0.093 3.907 10 C 0.116 3.884 11 H 0.114 0.886 12 C -0.127 4.127 13 C -0.124 4.124 14 C 0.122 3.878 15 H 0.112 0.888 16 C 0.103 3.897 17 N -0.624 5.624 18 C 0.555 3.445 19 O -0.512 6.512 20 C -0.147 4.147 21 S -0.059 6.059 22 C -0.536 4.536 23 H 0.072 0.928 24 C 0.074 3.926 25 N -0.867 5.867 26 Si 0.919 3.081 27 H -0.274 1.274 28 H -0.283 1.283 29 H -0.274 1.274 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.062 0.938 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.072 0.928 46 H 0.088 0.912 47 H 0.089 0.911 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.282 -15.869 16.073 25.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.134 4.134 4 H 0.111 0.889 5 C -0.204 4.204 6 C 0.310 3.690 7 O -0.419 6.419 8 N -0.340 5.340 9 C -0.031 4.031 10 C 0.011 3.989 11 H 0.132 0.868 12 C -0.165 4.165 13 C -0.163 4.163 14 C 0.017 3.983 15 H 0.130 0.870 16 C -0.020 4.020 17 N -0.361 5.361 18 C 0.344 3.656 19 O -0.386 6.386 20 C -0.297 4.297 21 S 0.168 5.832 22 C -0.684 4.684 23 H 0.090 0.910 24 C -0.135 4.135 25 N -0.502 5.502 26 Si 0.745 3.255 27 H -0.199 1.199 28 H -0.208 1.208 29 H -0.199 1.199 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.083 0.917 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.115 0.885 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.118 0.882 45 H 0.091 0.909 46 H 0.106 0.894 47 H 0.107 0.893 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -10.044 -16.441 15.448 24.695 hybrid contribution -2.173 1.140 -0.065 2.455 sum -12.217 -15.302 15.383 24.901 Atomic orbital electron populations 1.21833 0.95296 1.01968 1.01977 1.21362 0.95591 0.94045 1.03351 1.21387 0.91792 0.99464 1.00709 0.88931 1.21900 1.02326 1.00431 0.95748 1.20691 0.90201 0.81787 0.76340 1.90680 1.68039 1.34395 1.48752 1.48115 1.08445 1.14498 1.62895 1.22509 0.95445 0.83905 1.01204 1.22713 0.84706 0.98529 0.92942 0.86828 1.22567 0.97990 1.01028 0.94941 1.22476 0.97117 1.01120 0.95566 1.22545 0.98956 0.85515 0.91239 0.86961 1.22207 0.79860 0.98484 1.01482 1.49287 1.13864 1.33025 1.39906 1.20042 0.87338 0.80971 0.77230 1.90723 1.18397 1.70415 1.59016 1.23504 1.03119 0.98808 1.04283 1.85448 1.18665 1.36091 1.43034 1.22802 1.00557 1.18383 1.26699 0.90979 1.24993 0.96048 0.97226 0.95279 1.70004 1.19374 1.35119 1.25723 0.86223 0.80629 0.80259 0.78385 1.19923 1.20798 1.19919 0.92346 0.92450 0.92632 0.90890 0.91700 0.91005 0.91741 0.91881 0.90432 0.88499 0.90619 0.90444 0.90398 0.90869 0.88155 0.90925 0.89365 0.89300 0.92078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.67 37.16 0.36 -0.50 16 2 C -0.11 -0.80 4.85 -26.73 -0.13 -0.93 16 3 C -0.11 -0.82 1.86 -91.77 -0.17 -0.99 16 4 H 0.09 0.57 6.87 -51.93 -0.36 0.21 16 5 C -0.15 -0.83 8.50 37.16 0.32 -0.51 16 6 C 0.52 5.45 6.80 -10.99 -0.07 5.37 16 7 O -0.54 -7.53 15.66 5.56 0.09 -7.45 16 8 N -0.61 -6.02 2.24 -171.24 -0.38 -6.41 16 9 C 0.09 0.78 5.44 -2.99 -0.02 0.77 16 10 C 0.12 1.11 3.99 -65.43 -0.26 0.85 16 11 H 0.11 0.99 7.42 -51.93 -0.39 0.61 16 12 C -0.13 -1.03 6.19 -25.24 -0.16 -1.19 16 13 C -0.12 -1.16 6.18 -25.25 -0.16 -1.32 16 14 C 0.12 1.43 4.12 -65.65 -0.27 1.16 16 15 H 0.11 1.43 7.92 -51.93 -0.41 1.02 16 16 C 0.10 1.17 5.92 -3.20 -0.02 1.15 16 17 N -0.62 -8.38 2.74 -152.77 -0.42 -8.80 16 18 C 0.56 10.20 7.94 -10.98 -0.09 10.11 16 19 O -0.51 -11.52 16.17 5.56 0.09 -11.43 16 20 C -0.15 -2.85 5.15 36.01 0.19 -2.67 16 21 S -0.06 -1.57 20.57 -107.50 -2.21 -3.78 16 22 C -0.54 -14.90 9.50 30.94 0.29 -14.61 16 23 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 24 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 25 N -0.87 -25.82 13.22 55.49 0.73 -25.08 16 26 Si 0.92 20.96 29.55 -169.99 -5.02 15.94 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 29 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 30 H 0.06 0.28 6.68 -51.93 -0.35 -0.06 16 31 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 0.62 8.03 -51.93 -0.42 0.21 16 34 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.31 6.81 -51.93 -0.35 -0.05 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.32 4.90 -51.93 -0.25 0.07 16 38 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.10 0.55 4.91 -51.93 -0.25 0.30 16 40 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.08 0.52 5.69 -51.93 -0.30 0.23 16 42 H 0.08 0.73 7.84 -51.93 -0.41 0.32 16 43 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 44 H 0.10 1.15 7.08 -51.93 -0.37 0.78 16 45 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 46 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 47 H 0.09 1.59 8.04 -51.92 -0.42 1.18 16 48 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 384.66 15.07 5.80 5.80 Total: -1.00 -34.99 384.66 -9.23 -44.22 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.62 Total: -1.67 kcal Atomic # 6 Polarization: -1.05 SS G_CDS: -0.28 Total: -1.34 kcal Atomic # 7 Polarization: -40.22 SS G_CDS: -0.07 Total: -40.29 kcal Atomic # 8 Polarization: -19.05 SS G_CDS: 0.18 Total: -18.87 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -1.57 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.99 -9.23 -44.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001758647399.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.504 kcal (2) G-P(sol) polarization free energy of solvation -34.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds