Wall clock time and date at job start Sat Apr 11 2020 06:02:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.51575 * 135.78129 * 2 1 4 4 C 1.53838 * 86.75961 * 154.84544 * 3 2 1 5 5 C 1.52997 * 113.65854 * 270.22064 * 4 3 2 6 6 C 1.50698 * 113.66137 * 139.26767 * 4 3 2 7 7 O 1.21279 * 120.00078 * 0.02562 * 6 4 3 8 8 N 1.34781 * 120.00149 * 180.02562 * 6 4 3 9 9 C 1.46496 * 120.00112 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.46967 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47018 * 294.99780 * 10 9 8 12 12 C 1.53006 * 109.47054 * 174.99636 * 10 9 8 13 13 C 1.52997 * 109.47127 * 174.99886 * 12 10 9 14 14 N 1.46499 * 109.47041 * 55.00270 * 10 9 8 15 15 C 1.34785 * 119.99572 * 205.00094 * 14 10 9 16 16 O 1.21274 * 119.99855 * 359.97438 * 15 14 10 17 17 C 1.50703 * 119.99767 * 179.97438 * 15 14 10 18 18 S 1.80996 * 109.47012 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99861 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00036 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99709 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99989 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99825 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47341 * 90.00014 * 23 21 19 25 25 H 1.48498 * 109.47125 * 210.00116 * 23 21 19 26 26 H 1.48505 * 109.47018 * 329.99850 * 23 21 19 27 27 C 1.51576 * 135.78298 * 179.97438 * 2 1 3 28 28 H 1.08000 * 120.00198 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00382 * 180.02562 * 1 2 3 30 30 H 1.08998 * 113.67271 * 40.37780 * 3 2 1 31 31 H 1.09010 * 113.75082 * 269.32059 * 3 2 1 32 32 H 1.09000 * 109.47357 * 298.33039 * 5 4 3 33 33 H 1.09001 * 109.47123 * 58.33215 * 5 4 3 34 34 H 1.09000 * 109.47460 * 178.33074 * 5 4 3 35 35 H 0.97004 * 119.99761 * 359.97438 * 8 6 4 36 36 H 1.09001 * 109.47292 * 59.99566 * 9 8 6 37 37 H 1.09008 * 109.47049 * 299.99621 * 9 8 6 38 38 H 1.08998 * 109.46505 * 54.99758 * 12 10 9 39 39 H 1.08996 * 109.46884 * 295.00638 * 12 10 9 40 40 H 1.09002 * 109.47153 * 180.02562 * 13 12 10 41 41 H 1.09001 * 109.46832 * 60.00321 * 13 12 10 42 42 H 1.09004 * 109.47261 * 300.00303 * 13 12 10 43 43 H 0.96999 * 120.00274 * 24.99328 * 14 10 9 44 44 H 1.09001 * 109.47037 * 299.99900 * 17 15 14 45 45 H 1.09004 * 109.47137 * 59.99859 * 17 15 14 46 46 H 0.97001 * 119.99672 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.66319 * 90.69031 * 27 2 1 48 48 H 1.08993 * 113.66563 * 319.62520 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3963 1.0571 0.0000 4 6 3.3035 0.0001 0.6529 5 6 3.2461 0.0016 2.1818 6 6 4.7129 0.0001 0.1194 7 8 5.0343 0.7882 -0.7445 8 7 5.6163 -0.8759 0.6023 9 6 6.9865 -0.8755 0.0841 10 6 7.8011 -1.9577 0.7956 11 1 7.8925 -1.7077 1.8526 12 6 9.1945 -2.0419 0.1690 13 6 10.0497 -3.0345 0.9590 14 7 7.1242 -3.2494 0.6560 15 6 7.3332 -4.2216 1.5659 16 8 8.0820 -4.0271 2.4998 17 6 6.6364 -5.5501 1.4227 18 16 7.1192 -6.6349 2.7887 19 6 6.1868 -8.0734 2.3812 20 1 5.5601 -8.0795 1.5017 21 6 6.2577 -9.1987 3.1908 22 7 7.0210 -9.1910 4.2630 23 14 5.2686 -10.7235 2.7592 24 1 6.0789 -11.6077 1.8835 25 1 4.9125 -11.4511 4.0037 26 1 4.0282 -10.3238 2.0473 27 6 2.3963 -1.0571 0.0005 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 2.1796 1.9073 0.6467 31 1 2.7192 1.3548 -0.9977 32 1 3.5890 0.9657 2.5573 33 1 2.2202 -0.1711 2.5070 34 1 3.8883 -0.7889 2.5703 35 1 5.3593 -1.5061 1.2935 36 1 7.4424 0.0983 0.2629 37 1 6.9700 -1.0779 -0.9869 38 1 9.6636 -1.0583 0.1932 39 1 9.1084 -2.3781 -0.8642 40 1 11.0425 -3.0941 0.5129 41 1 9.5805 -4.0180 0.9348 42 1 10.1357 -2.6982 1.9923 43 1 6.5255 -3.4050 -0.0911 44 1 5.5572 -5.3984 1.4426 45 1 6.9213 -6.0096 0.4761 46 1 7.0703 -9.9773 4.8289 47 1 2.7182 -1.3540 -0.9977 48 1 2.1795 -1.9069 0.6475 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759353731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:05 Heat of formation + Delta-G solvation = -44.966633 kcal Electronic energy + Delta-G solvation = -27284.309554 eV Core-core repulsion = 23466.317173 eV Total energy + Delta-G solvation = -3817.992382 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.98730 -39.75886 -38.23516 -36.43999 -34.13840 -32.48490 -32.44930 -31.86947 -29.49057 -28.36816 -27.90619 -26.26841 -25.52814 -24.43481 -22.50968 -21.50831 -20.41937 -19.84823 -18.10982 -17.90078 -17.25926 -16.72485 -16.47521 -15.99769 -15.58488 -15.34643 -14.95148 -14.84236 -14.72539 -14.50791 -14.22702 -13.81808 -13.62018 -13.49165 -13.18819 -13.09186 -12.81067 -12.55884 -12.51396 -12.31301 -12.20997 -11.82061 -11.73790 -11.50968 -11.32143 -11.17091 -11.09516 -11.06176 -10.82575 -10.77924 -10.56486 -9.95838 -9.85463 -9.48665 -9.42732 -9.33532 -9.11002 -8.94702 -8.29097 -6.54781 -6.26093 -3.96791 1.87842 2.34476 2.83903 2.97150 3.03850 3.19230 3.25029 3.28541 3.64563 3.95832 4.09385 4.16362 4.16989 4.36803 4.53829 4.61444 4.85384 4.98677 5.00288 5.09050 5.09455 5.21537 5.26580 5.36299 5.36772 5.37428 5.41211 5.46830 5.54155 5.56524 5.59652 5.75314 5.79007 5.80855 5.84016 5.85751 6.01949 6.07747 6.09454 6.13617 6.20547 6.53418 6.56838 6.60169 7.21059 7.55320 7.60600 7.94273 8.30823 8.52943 9.19606 10.81238 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009570 B = 0.002836 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.185859 B = 9871.067943 C =12231.206085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.148 4.148 3 C -0.081 4.081 4 C -0.106 4.106 5 C -0.128 4.128 6 C 0.531 3.469 7 O -0.541 6.541 8 N -0.725 5.725 9 C 0.112 3.888 10 C 0.135 3.865 11 H 0.096 0.904 12 C -0.129 4.129 13 C -0.146 4.146 14 N -0.736 5.736 15 C 0.533 3.467 16 O -0.508 6.508 17 C -0.155 4.155 18 S -0.058 6.058 19 C -0.536 4.536 20 H 0.072 0.928 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C -0.089 4.089 28 H 0.106 0.894 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.105 0.895 32 H 0.065 0.935 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.406 0.594 36 H 0.081 0.919 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.064 0.936 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.061 0.939 43 H 0.398 0.602 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.269 0.731 47 H 0.096 0.904 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.127 19.591 -9.364 22.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.118 4.118 4 C -0.109 4.109 5 C -0.186 4.186 6 C 0.318 3.682 7 O -0.418 6.418 8 N -0.378 5.378 9 C -0.012 4.012 10 C 0.029 3.971 11 H 0.114 0.886 12 C -0.168 4.168 13 C -0.204 4.204 14 N -0.392 5.392 15 C 0.319 3.681 16 O -0.381 6.381 17 C -0.306 4.306 18 S 0.169 5.831 19 C -0.685 4.685 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.126 4.126 28 H 0.124 0.876 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.241 0.759 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.232 0.768 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.114 0.886 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.538 20.385 -8.244 22.676 hybrid contribution -1.831 -1.674 -1.408 2.853 sum -7.369 18.711 -9.652 22.306 Atomic orbital electron populations 1.22896 0.93378 1.02285 1.02081 1.22740 0.93841 0.97907 1.00362 1.22239 0.92012 0.95483 1.02056 1.21964 0.91015 1.00466 0.97426 1.21599 1.03321 1.02800 0.90849 1.20309 0.86454 0.79844 0.81640 1.90688 1.80130 1.39336 1.31616 1.46028 1.10931 1.38102 1.42696 1.21699 0.81511 0.99248 0.98783 1.21246 0.91820 0.82472 1.01547 0.88635 1.21878 0.94454 1.00572 0.99928 1.21805 0.98367 1.00067 1.00137 1.46127 1.49659 1.13786 1.29589 1.20265 0.81313 0.84981 0.81553 1.90721 1.35474 1.80592 1.31342 1.23550 1.03081 0.96563 1.07375 1.85381 1.61455 1.08201 1.28061 1.22861 1.31799 0.99605 1.14194 0.90977 1.24986 0.95562 0.98508 0.94476 1.70011 1.36785 1.29892 1.13567 0.86180 0.79875 0.81484 0.78042 1.20265 1.20738 1.19688 1.22298 0.92970 0.95975 1.01387 0.87573 0.87503 0.90377 0.87671 0.91557 0.90981 0.91612 0.75877 0.90033 0.90827 0.91192 0.91715 0.93578 0.91731 0.92003 0.76815 0.89358 0.89340 0.92158 0.88598 0.89647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 14.71 29.02 0.43 -0.77 16 2 C -0.15 -1.19 6.60 -100.29 -0.66 -1.86 16 3 C -0.08 -0.69 6.98 -27.02 -0.19 -0.88 16 4 C -0.11 -0.89 1.27 -154.88 -0.20 -1.09 16 5 C -0.13 -0.95 8.98 37.16 0.33 -0.61 16 6 C 0.53 5.52 6.93 -10.98 -0.08 5.44 16 7 O -0.54 -7.40 15.90 5.56 0.09 -7.32 16 8 N -0.73 -6.46 5.27 -60.29 -0.32 -6.77 16 9 C 0.11 0.98 5.23 -4.04 -0.02 0.96 16 10 C 0.13 1.35 2.42 -67.93 -0.16 1.18 16 11 H 0.10 1.11 7.58 -51.93 -0.39 0.72 16 12 C -0.13 -1.28 5.61 -26.73 -0.15 -1.43 16 13 C -0.15 -1.91 8.51 37.16 0.32 -1.59 16 14 N -0.74 -8.27 4.47 -53.80 -0.24 -8.51 16 15 C 0.53 8.66 6.42 -10.98 -0.07 8.59 16 16 O -0.51 -10.03 13.00 5.56 0.07 -9.96 16 17 C -0.16 -2.88 6.16 36.01 0.22 -2.66 16 18 S -0.06 -1.48 20.57 -107.50 -2.21 -3.70 16 19 C -0.54 -14.81 9.50 30.94 0.29 -14.52 16 20 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 21 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 22 N -0.87 -25.60 13.22 55.49 0.73 -24.87 16 23 Si 0.92 20.96 29.55 -169.99 -5.02 15.94 16 24 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 25 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 26 H -0.27 -6.03 7.11 56.52 0.40 -5.62 16 27 C -0.09 -0.71 7.18 -27.02 -0.19 -0.90 16 28 H 0.11 0.63 8.06 -52.49 -0.42 0.21 16 29 H 0.11 0.67 8.06 -52.49 -0.42 0.25 16 30 H 0.08 0.60 8.10 -51.93 -0.42 0.18 16 31 H 0.11 1.02 7.42 -51.92 -0.39 0.64 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.50 7.70 -51.93 -0.40 0.10 16 34 H 0.06 0.47 7.04 -51.93 -0.37 0.10 16 35 H 0.41 3.39 7.04 -40.82 -0.29 3.10 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.07 0.65 8.14 -51.92 -0.42 0.22 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 1.02 5.64 -51.93 -0.29 0.73 16 42 H 0.06 0.88 7.85 -51.93 -0.41 0.47 16 43 H 0.40 3.65 8.60 -40.82 -0.35 3.30 16 44 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 45 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 46 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.10 0.78 8.09 -51.93 -0.42 0.36 16 48 H 0.09 0.63 8.10 -51.93 -0.42 0.21 16 LS Contribution 405.83 15.07 6.12 6.12 Total: -1.00 -33.57 405.83 -8.93 -42.49 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: -7.92 Total: 4.76 kcal Atomic # 6 Polarization: -7.95 SS G_CDS: -0.23 Total: -8.17 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.18 Total: -40.15 kcal Atomic # 8 Polarization: -17.44 SS G_CDS: 0.16 Total: -17.28 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.70 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.57 -8.93 -42.49 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759353731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.475 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds