Wall clock time and date at job start Sat Apr 11 2020 06:02:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.51575 * 135.78129 * 2 1 4 4 C 1.53838 * 86.75961 * 154.84544 * 3 2 1 5 5 C 1.52997 * 113.65854 * 270.22064 * 4 3 2 6 6 C 1.50698 * 113.66137 * 139.26767 * 4 3 2 7 7 O 1.21279 * 120.00078 * 0.02562 * 6 4 3 8 8 N 1.34781 * 120.00149 * 180.02562 * 6 4 3 9 9 C 1.46496 * 120.00112 * 180.02562 * 8 6 4 10 10 C 1.52999 * 109.46967 * 179.97438 * 9 8 6 11 11 H 1.09001 * 109.47018 * 294.99780 * 10 9 8 12 12 C 1.53006 * 109.47054 * 174.99636 * 10 9 8 13 13 C 1.52997 * 109.47127 * 174.99886 * 12 10 9 14 14 N 1.46499 * 109.47041 * 55.00270 * 10 9 8 15 15 C 1.34785 * 119.99572 * 205.00094 * 14 10 9 16 16 O 1.21274 * 119.99855 * 359.97438 * 15 14 10 17 17 C 1.50703 * 119.99767 * 179.97438 * 15 14 10 18 18 S 1.80996 * 109.47012 * 179.97438 * 17 15 14 19 19 C 1.76201 * 99.99861 * 180.02562 * 18 17 15 20 20 H 1.07997 * 120.00036 * 359.97438 * 19 18 17 21 21 C 1.38805 * 119.99709 * 179.97438 * 19 18 17 22 22 N 1.31628 * 119.99989 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 119.99825 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47341 * 90.00014 * 23 21 19 25 25 H 1.48498 * 109.47125 * 210.00116 * 23 21 19 26 26 H 1.48505 * 109.47018 * 329.99850 * 23 21 19 27 27 C 1.51576 * 135.78298 * 179.97438 * 2 1 3 28 28 H 1.08000 * 120.00198 * 0.02562 * 1 2 3 29 29 H 1.08002 * 120.00382 * 180.02562 * 1 2 3 30 30 H 1.08998 * 113.67271 * 40.37780 * 3 2 1 31 31 H 1.09010 * 113.75082 * 269.32059 * 3 2 1 32 32 H 1.09000 * 109.47357 * 298.33039 * 5 4 3 33 33 H 1.09001 * 109.47123 * 58.33215 * 5 4 3 34 34 H 1.09000 * 109.47460 * 178.33074 * 5 4 3 35 35 H 0.97004 * 119.99761 * 359.97438 * 8 6 4 36 36 H 1.09001 * 109.47292 * 59.99566 * 9 8 6 37 37 H 1.09008 * 109.47049 * 299.99621 * 9 8 6 38 38 H 1.08998 * 109.46505 * 54.99758 * 12 10 9 39 39 H 1.08996 * 109.46884 * 295.00638 * 12 10 9 40 40 H 1.09002 * 109.47153 * 180.02562 * 13 12 10 41 41 H 1.09001 * 109.46832 * 60.00321 * 13 12 10 42 42 H 1.09004 * 109.47261 * 300.00303 * 13 12 10 43 43 H 0.96999 * 120.00274 * 24.99328 * 14 10 9 44 44 H 1.09001 * 109.47037 * 299.99900 * 17 15 14 45 45 H 1.09004 * 109.47137 * 59.99859 * 17 15 14 46 46 H 0.97001 * 119.99672 * 179.97438 * 22 21 19 47 47 H 1.09001 * 113.66319 * 90.69031 * 27 2 1 48 48 H 1.08993 * 113.66563 * 319.62520 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3963 1.0571 0.0000 4 6 3.3035 0.0001 0.6529 5 6 3.2461 0.0016 2.1818 6 6 4.7129 0.0001 0.1194 7 8 5.0343 0.7882 -0.7445 8 7 5.6163 -0.8759 0.6023 9 6 6.9865 -0.8755 0.0841 10 6 7.8011 -1.9577 0.7956 11 1 7.8925 -1.7077 1.8526 12 6 9.1945 -2.0419 0.1690 13 6 10.0497 -3.0345 0.9590 14 7 7.1242 -3.2494 0.6560 15 6 7.3332 -4.2216 1.5659 16 8 8.0820 -4.0271 2.4998 17 6 6.6364 -5.5501 1.4227 18 16 7.1192 -6.6349 2.7887 19 6 6.1868 -8.0734 2.3812 20 1 5.5601 -8.0795 1.5017 21 6 6.2577 -9.1987 3.1908 22 7 7.0210 -9.1910 4.2630 23 14 5.2686 -10.7235 2.7592 24 1 6.0789 -11.6077 1.8835 25 1 4.9125 -11.4511 4.0037 26 1 4.0282 -10.3238 2.0473 27 6 2.3963 -1.0571 0.0005 28 1 -0.5400 0.9353 -0.0004 29 1 -0.5401 -0.9353 0.0004 30 1 2.1796 1.9073 0.6467 31 1 2.7192 1.3548 -0.9977 32 1 3.5890 0.9657 2.5573 33 1 2.2202 -0.1711 2.5070 34 1 3.8883 -0.7889 2.5703 35 1 5.3593 -1.5061 1.2935 36 1 7.4424 0.0983 0.2629 37 1 6.9700 -1.0779 -0.9869 38 1 9.6636 -1.0583 0.1932 39 1 9.1084 -2.3781 -0.8642 40 1 11.0425 -3.0941 0.5129 41 1 9.5805 -4.0180 0.9348 42 1 10.1357 -2.6982 1.9923 43 1 6.5255 -3.4050 -0.0911 44 1 5.5572 -5.3984 1.4426 45 1 6.9213 -6.0096 0.4761 46 1 7.0703 -9.9773 4.8289 47 1 2.7182 -1.3540 -0.9977 48 1 2.1795 -1.9069 0.6475 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759353731.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:04 Heat of formation + Delta-G solvation = -67.014920 kcal Electronic energy + Delta-G solvation = -27285.265640 eV Core-core repulsion = 23466.317173 eV Total energy + Delta-G solvation = -3818.948467 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.74733 -40.90743 -39.03499 -37.48379 -35.03874 -34.56842 -33.59788 -32.49146 -30.73511 -29.36401 -28.56346 -27.63291 -26.90311 -25.28139 -23.28813 -22.54652 -21.56266 -20.64148 -19.79041 -18.70853 -18.08715 -17.92534 -17.38425 -17.05506 -16.86364 -16.57847 -16.38688 -15.95024 -15.60099 -15.38125 -15.25557 -14.88909 -14.61355 -14.59521 -14.42512 -14.22487 -13.82662 -13.52540 -13.42794 -13.17531 -13.14657 -12.96839 -12.87547 -12.86263 -12.62171 -12.48352 -12.39728 -12.17278 -11.85149 -11.77284 -11.68939 -11.16484 -11.13108 -10.83436 -10.77874 -10.23950 -10.17063 -10.05083 -10.00135 -8.62583 -8.33599 -6.09905 1.28765 1.30060 1.42457 1.48359 1.54348 1.58369 1.68396 2.10926 2.27754 2.35000 3.00846 3.32303 3.34532 3.45672 3.54367 3.57054 3.87529 3.93098 3.99985 4.03731 4.14328 4.34467 4.39683 4.42779 4.53325 4.56784 4.64534 4.65658 4.77055 4.78386 4.83818 4.85383 4.93127 4.93952 4.99754 5.06423 5.18458 5.19794 5.24180 5.35985 5.43441 5.49258 5.55138 5.55873 5.98848 6.21009 6.43840 6.52569 7.08517 7.15143 7.30498 8.75239 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.009570 B = 0.002836 C = 0.002289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2925.185859 B = 9871.067943 C =12231.206085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.163 4.163 3 C -0.083 4.083 4 C -0.103 4.103 5 C -0.126 4.126 6 C 0.532 3.468 7 O -0.576 6.576 8 N -0.718 5.718 9 C 0.120 3.880 10 C 0.142 3.858 11 H 0.081 0.919 12 C -0.124 4.124 13 C -0.143 4.143 14 N -0.711 5.711 15 C 0.539 3.461 16 O -0.547 6.547 17 C -0.132 4.132 18 S -0.143 6.143 19 C -0.546 4.546 20 H 0.081 0.919 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 0.994 3.006 24 H -0.270 1.270 25 H -0.279 1.279 26 H -0.258 1.258 27 C -0.086 4.086 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.066 0.934 33 H 0.078 0.922 34 H 0.067 0.933 35 H 0.410 0.590 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.056 0.944 41 H 0.033 0.967 42 H 0.042 0.958 43 H 0.413 0.587 44 H 0.109 0.891 45 H 0.103 0.897 46 H 0.270 0.730 47 H 0.091 0.909 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.745 19.984 -11.037 24.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.163 4.163 3 C -0.120 4.120 4 C -0.106 4.106 5 C -0.183 4.183 6 C 0.319 3.681 7 O -0.455 6.455 8 N -0.370 5.370 9 C -0.004 4.004 10 C 0.037 3.963 11 H 0.099 0.901 12 C -0.163 4.163 13 C -0.201 4.201 14 N -0.366 5.366 15 C 0.325 3.675 16 O -0.423 6.423 17 C -0.284 4.284 18 S 0.084 5.916 19 C -0.694 4.694 20 H 0.099 0.901 21 C -0.190 4.190 22 N -0.547 5.547 23 Si 0.816 3.184 24 H -0.195 1.195 25 H -0.204 1.204 26 H -0.182 1.182 27 C -0.123 4.123 28 H 0.135 0.865 29 H 0.134 0.866 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.085 0.915 33 H 0.097 0.903 34 H 0.086 0.914 35 H 0.246 0.754 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.075 0.925 41 H 0.052 0.948 42 H 0.061 0.939 43 H 0.249 0.751 44 H 0.127 0.873 45 H 0.121 0.879 46 H 0.079 0.921 47 H 0.110 0.890 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -7.173 20.795 -9.949 24.142 hybrid contribution -1.318 -1.675 -0.947 2.332 sum -8.491 19.120 -10.896 23.588 Atomic orbital electron populations 1.23129 0.93122 1.03257 1.00303 1.22743 0.94135 0.97481 1.01934 1.22189 0.92498 0.95955 1.01355 1.21983 0.89801 1.00803 0.98028 1.21595 1.03804 1.02967 0.89932 1.20617 0.87170 0.79276 0.81045 1.90674 1.80828 1.40773 1.33265 1.46001 1.10858 1.37736 1.42410 1.21639 0.81135 0.98745 0.98879 1.21259 0.92266 0.81696 1.01089 0.90056 1.21857 0.93553 1.00954 0.99897 1.21735 0.99430 0.99172 0.99755 1.45830 1.49033 1.13165 1.28564 1.19849 0.80758 0.84993 0.81884 1.90724 1.37209 1.81132 1.33276 1.23394 1.04425 0.96228 1.04334 1.85524 1.62665 1.10503 1.32940 1.23206 1.31683 1.00079 1.14402 0.90096 1.26070 0.96632 1.02122 0.94208 1.70173 1.38651 1.30972 1.14940 0.85012 0.78540 0.76891 0.77919 1.19525 1.20402 1.18159 1.22272 0.92760 0.96073 1.01233 0.86544 0.86601 0.89849 0.89233 0.91476 0.90348 0.91369 0.75389 0.89444 0.90003 0.88823 0.90273 0.92485 0.94786 0.93904 0.75064 0.87284 0.87899 0.92065 0.89024 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.96 14.71 67.79 1.00 -0.96 16 2 C -0.16 -2.37 6.60 -15.98 -0.11 -2.48 16 3 C -0.08 -1.34 6.98 30.41 0.21 -1.13 16 4 C -0.10 -1.61 1.27 -52.43 -0.07 -1.68 16 5 C -0.13 -1.66 8.98 71.98 0.65 -1.01 16 6 C 0.53 10.35 6.93 87.66 0.61 10.96 16 7 O -0.58 -15.24 15.90 -3.03 -0.05 -15.29 16 8 N -0.72 -11.46 5.27 -463.06 -2.44 -13.90 16 9 C 0.12 1.82 5.23 86.38 0.45 2.27 16 10 C 0.14 2.58 2.42 44.99 0.11 2.69 16 11 H 0.08 1.81 7.58 -2.39 -0.02 1.79 16 12 C -0.12 -2.19 5.61 30.60 0.17 -2.02 16 13 C -0.14 -3.68 8.51 71.98 0.61 -3.07 16 14 N -0.71 -14.65 4.47 -442.52 -1.98 -16.63 16 15 C 0.54 17.18 6.42 87.66 0.56 17.74 16 16 O -0.55 -21.99 13.00 -3.01 -0.04 -22.03 16 17 C -0.13 -4.80 6.16 71.24 0.44 -4.36 16 18 S -0.14 -7.57 20.57 -56.49 -1.16 -8.73 16 19 C -0.55 -30.20 9.50 67.96 0.65 -29.56 16 20 H 0.08 4.16 7.80 -2.91 -0.02 4.14 16 21 C 0.01 0.81 5.49 84.86 0.47 1.27 16 22 N -0.91 -54.86 13.22 21.65 0.29 -54.58 16 23 Si 0.99 42.68 29.55 68.60 2.03 44.71 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 25 H -0.28 -11.70 7.11 99.48 0.71 -11.00 16 26 H -0.26 -10.34 7.11 99.48 0.71 -9.64 16 27 C -0.09 -1.24 7.18 30.40 0.22 -1.02 16 28 H 0.12 1.15 8.06 -2.91 -0.02 1.12 16 29 H 0.12 1.19 8.06 -2.91 -0.02 1.17 16 30 H 0.08 1.22 8.10 -2.39 -0.02 1.20 16 31 H 0.09 1.74 7.42 -2.38 -0.02 1.72 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.08 0.95 7.70 -2.39 -0.02 0.93 16 34 H 0.07 0.86 7.04 -2.39 -0.02 0.84 16 35 H 0.41 6.05 7.04 -92.71 -0.65 5.39 16 36 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 38 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 1.29 8.14 -2.39 -0.02 1.28 16 41 H 0.03 1.07 5.64 -2.39 -0.01 1.06 16 42 H 0.04 1.24 7.85 -2.38 -0.02 1.22 16 43 H 0.41 6.38 8.60 -92.71 -0.80 5.58 16 44 H 0.11 3.50 8.14 -2.39 -0.02 3.48 16 45 H 0.10 3.44 8.14 -2.39 -0.02 3.42 16 46 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 47 H 0.09 1.38 8.09 -2.39 -0.02 1.36 16 48 H 0.09 1.18 8.10 -2.39 -0.02 1.16 16 Total: -1.00 -75.02 405.83 2.13 -72.89 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: -0.49 Total: 25.94 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: 5.97 Total: -12.36 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -4.13 Total: -85.11 kcal Atomic # 8 Polarization: -37.24 SS G_CDS: -0.09 Total: -37.32 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -1.16 Total: -8.73 kcal Total: -75.02 2.13 -72.89 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759353731.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.875 kcal (2) G-P(sol) polarization free energy of solvation -75.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds