Wall clock time and date at job start Sat Apr 11 2020 06:02:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46834 * 2 1 4 4 N 1.46498 * 109.47152 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00094 * 179.97438 * 4 3 2 6 6 O 1.21273 * 120.00024 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99951 * 180.02562 * 5 4 3 8 8 C 1.52996 * 109.47373 * 180.02562 * 7 5 4 9 9 C 1.52996 * 117.50199 * 243.62442 * 8 7 5 10 10 C 1.52997 * 60.00035 * 252.50469 * 9 8 7 11 11 N 1.46500 * 109.47282 * 120.00062 * 2 1 3 12 12 C 1.34775 * 119.99751 * 294.97907 * 11 2 1 13 13 O 1.21286 * 120.00577 * 5.20091 * 12 11 2 14 14 C 1.50705 * 119.99799 * 185.20013 * 12 11 2 15 15 S 1.81002 * 109.46808 * 179.97438 * 14 12 11 16 16 C 1.76203 * 99.99929 * 180.02562 * 15 14 12 17 17 H 1.08007 * 119.99976 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00531 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00300 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99680 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46984 * 90.00037 * 20 18 16 22 22 H 1.48497 * 109.47051 * 210.00363 * 20 18 16 23 23 H 1.48497 * 109.47040 * 330.00142 * 20 18 16 24 24 C 1.53000 * 109.47438 * 240.00402 * 2 1 3 25 25 C 1.52998 * 117.49860 * 225.41141 * 24 2 1 26 26 C 1.52997 * 60.00140 * 107.48459 * 25 24 2 27 27 H 1.09009 * 109.46952 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47442 * 299.99445 * 1 2 3 29 29 H 1.09000 * 109.47377 * 60.00289 * 1 2 3 30 30 H 1.09000 * 109.46902 * 300.00002 * 3 2 1 31 31 H 1.09001 * 109.47150 * 60.00081 * 3 2 1 32 32 H 0.97000 * 119.99909 * 0.02562 * 4 3 2 33 33 H 1.09003 * 109.47113 * 300.00382 * 7 5 4 34 34 H 1.09001 * 109.47019 * 60.00215 * 7 5 4 35 35 H 1.09008 * 115.54524 * 29.32995 * 8 7 5 36 36 H 1.09006 * 117.49867 * 359.97438 * 9 8 7 37 37 H 1.09000 * 117.50078 * 145.01422 * 9 8 7 38 38 H 1.08997 * 117.50379 * 252.50592 * 10 9 8 39 39 H 1.09002 * 117.49621 * 107.48579 * 10 9 8 40 40 H 0.96996 * 120.00066 * 114.98218 * 11 2 1 41 41 H 1.08991 * 109.47155 * 300.00108 * 14 12 11 42 42 H 1.08996 * 109.46870 * 60.00597 * 14 12 11 43 43 H 0.97000 * 119.99925 * 179.97438 * 19 18 16 44 44 H 1.09000 * 115.56262 * 79.71414 * 24 2 1 45 45 H 1.09001 * 117.49841 * 214.97565 * 25 24 2 46 46 H 1.09003 * 117.50125 * 359.97438 * 25 24 2 47 47 H 1.08998 * 117.49625 * 252.50762 * 26 25 24 48 48 H 1.09001 * 117.49908 * 107.49055 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1787 2.6099 0.0002 6 8 3.5723 3.6601 -0.0002 7 6 5.6857 2.6099 0.0003 8 6 6.1957 4.0524 0.0004 9 6 6.9997 4.5176 -1.2154 10 6 7.7058 4.2679 0.1187 11 7 2.0183 -0.6906 1.1961 12 6 1.7782 -0.1741 2.4176 13 8 1.0786 0.8098 2.5333 14 6 2.3791 -0.8193 3.6399 15 16 1.8764 0.0998 5.1160 16 6 2.6962 -0.8438 6.3579 17 1 3.2883 -1.7034 6.0801 18 6 2.5812 -0.4826 7.6930 19 7 3.1940 -1.1872 8.6207 20 14 1.5577 1.0044 8.1734 21 1 0.1567 0.5808 8.4245 22 1 2.1189 1.6144 9.4055 23 1 1.5839 2.0000 7.0720 24 6 2.0400 -0.7211 -1.2493 25 6 3.1737 -1.7324 -1.0678 26 6 1.7544 -2.2197 -1.3659 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.9899 0.6026 0.0006 33 1 6.0490 2.0964 0.8904 34 1 6.0491 2.0958 -0.8896 35 1 5.5440 4.7814 0.4822 36 1 7.1656 3.7958 -2.0152 37 1 6.8769 5.5528 -1.5338 38 1 8.0477 5.1387 0.6780 39 1 8.3360 3.3819 0.1965 40 1 2.5145 -1.5195 1.1090 41 1 2.0298 -1.8490 3.7161 42 1 3.4660 -0.8093 3.5588 43 1 3.1139 -0.9345 9.5538 44 1 2.0313 -0.1342 -2.1677 45 1 3.9110 -1.8107 -1.8669 46 1 3.5566 -1.8836 -0.0585 47 1 1.2033 -2.6918 -0.5526 48 1 1.5579 -2.6187 -2.3610 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759377870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:08 Heat of formation + Delta-G solvation = -25.208030 kcal Electronic energy + Delta-G solvation = -27856.992773 eV Core-core repulsion = 24039.857189 eV Total energy + Delta-G solvation = -3817.135584 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.82285 -39.49355 -37.96560 -37.19243 -34.89747 -33.56559 -32.45937 -31.80692 -29.82034 -28.73746 -26.20983 -25.63038 -23.68907 -22.75916 -22.57040 -21.34745 -21.17801 -20.12200 -19.39805 -18.11515 -17.44986 -16.93051 -16.42194 -15.94682 -15.47271 -15.33643 -15.19126 -14.99930 -14.89533 -14.24571 -14.15721 -13.76304 -13.56405 -13.35156 -13.29427 -13.02749 -12.80772 -12.66111 -12.33536 -11.98734 -11.86814 -11.78294 -11.71934 -11.61504 -11.43892 -11.27434 -11.02173 -10.66346 -10.61576 -10.56109 -10.52976 -10.21534 -9.87056 -9.81156 -9.51401 -9.10948 -9.01579 -8.91422 -8.52116 -6.93700 -6.31049 -4.02803 2.65663 2.69601 2.89004 3.07716 3.24654 3.32030 3.37529 3.50085 3.60675 3.64635 4.12866 4.31547 4.36363 4.46791 4.49509 4.59514 4.62586 4.73220 4.75284 4.94509 5.01634 5.08254 5.13976 5.19922 5.22846 5.27471 5.35192 5.43373 5.43595 5.50415 5.55331 5.58219 5.68791 5.68995 5.70436 5.70870 5.80878 5.90801 5.94319 6.04817 6.14059 6.21535 6.40581 6.54341 7.45877 7.52380 7.91894 8.23750 8.38779 8.42725 9.15333 10.78156 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008199 B = 0.003606 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3414.375746 B = 7762.912835 C = 9990.270886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.200 3.800 3 C 0.109 3.891 4 N -0.723 5.723 5 C 0.514 3.486 6 O -0.538 6.538 7 C -0.111 4.111 8 C -0.139 4.139 9 C -0.180 4.180 10 C -0.180 4.180 11 N -0.735 5.735 12 C 0.534 3.466 13 O -0.508 6.508 14 C -0.125 4.125 15 S -0.137 6.137 16 C -0.523 4.523 17 H 0.087 0.913 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C -0.156 4.156 25 C -0.187 4.187 26 C -0.171 4.171 27 H 0.062 0.938 28 H 0.083 0.917 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.099 0.901 32 H 0.397 0.603 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.398 0.602 41 H 0.095 0.905 42 H 0.095 0.905 43 H 0.271 0.729 44 H 0.118 0.882 45 H 0.100 0.900 46 H 0.098 0.902 47 H 0.099 0.901 48 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.221 0.189 -24.765 25.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.113 3.887 3 C -0.016 4.016 4 N -0.375 5.375 5 C 0.300 3.700 6 O -0.414 6.414 7 C -0.151 4.151 8 C -0.157 4.157 9 C -0.217 4.217 10 C -0.217 4.217 11 N -0.394 5.394 12 C 0.321 3.679 13 O -0.382 6.382 14 C -0.276 4.276 15 S 0.089 5.911 16 C -0.670 4.670 17 H 0.105 0.895 18 C -0.112 4.112 19 N -0.517 5.517 20 Si 0.680 3.320 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.174 4.174 25 C -0.224 4.224 26 C -0.208 4.208 27 H 0.081 0.919 28 H 0.102 0.898 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.117 0.883 32 H 0.231 0.769 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.137 0.863 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.236 0.764 41 H 0.113 0.887 42 H 0.113 0.887 43 H 0.081 0.919 44 H 0.136 0.864 45 H 0.119 0.881 46 H 0.116 0.884 47 H 0.117 0.883 48 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.657 2.577 -24.370 24.649 hybrid contribution 1.005 -1.637 0.283 1.942 sum 3.662 0.940 -24.087 24.382 Atomic orbital electron populations 1.22116 0.92816 1.02874 1.03815 1.19964 0.94885 0.90709 0.83118 1.21835 0.79759 0.95716 1.04252 1.45845 1.07288 1.08508 1.75841 1.20531 0.90024 0.83589 0.75817 1.90695 1.70359 1.31282 1.49078 1.21216 0.92228 0.97368 1.04242 1.22047 0.93865 0.96770 1.03020 1.23020 1.04641 1.02401 0.91601 1.22998 0.94661 1.03489 1.00566 1.46365 1.59808 1.28083 1.05094 1.20243 0.80046 0.84004 0.83648 1.90659 1.36235 1.25516 1.85762 1.23291 1.03952 1.03871 0.96493 1.84838 1.68364 1.40804 0.97095 1.22313 1.35938 1.16434 0.92322 0.89453 1.24701 0.94677 0.96582 0.95266 1.69934 1.41722 1.38968 1.01050 0.86750 0.80993 0.83972 0.80241 1.19202 1.19908 1.15900 1.22569 1.03657 0.92237 0.98978 1.23082 0.92295 1.03906 1.03110 1.22992 0.98432 0.95886 1.03490 0.91931 0.89820 0.91712 0.91087 0.88295 0.76869 0.88336 0.89051 0.86314 0.89013 0.88852 0.88635 0.88750 0.76450 0.88692 0.88667 0.91924 0.86386 0.88140 0.88395 0.88301 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 8.37 37.15 0.31 -1.36 16 2 C 0.20 1.98 0.52 -131.82 -0.07 1.91 16 3 C 0.11 1.34 4.30 -4.04 -0.02 1.32 16 4 N -0.72 -7.96 5.18 -60.29 -0.31 -8.27 16 5 C 0.51 6.66 7.83 -10.99 -0.09 6.57 16 6 O -0.54 -9.26 15.56 5.56 0.09 -9.17 16 7 C -0.11 -1.06 5.98 -27.89 -0.17 -1.22 16 8 C -0.14 -1.45 5.41 -90.63 -0.49 -1.94 16 9 C -0.18 -1.55 10.18 -26.73 -0.27 -1.82 16 10 C -0.18 -1.53 10.25 -26.73 -0.27 -1.81 16 11 N -0.74 -8.08 4.49 -47.61 -0.21 -8.30 16 12 C 0.53 8.65 7.26 -10.98 -0.08 8.57 16 13 O -0.51 -10.02 12.10 5.55 0.07 -9.95 16 14 C -0.13 -2.30 6.16 36.01 0.22 -2.08 16 15 S -0.14 -3.41 18.55 -107.50 -1.99 -5.40 16 16 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 17 H 0.09 2.58 8.03 -52.48 -0.42 2.16 16 18 C 0.10 2.80 5.50 -17.43 -0.10 2.71 16 19 N -0.88 -26.40 13.97 55.49 0.78 -25.62 16 20 Si 0.86 21.77 27.74 -169.99 -4.71 17.06 16 21 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.24 -6.00 6.74 56.52 0.38 -5.62 16 24 C -0.16 -1.07 4.48 -90.62 -0.41 -1.48 16 25 C -0.19 -1.03 8.98 -26.73 -0.24 -1.27 16 26 C -0.17 -1.03 9.53 -26.73 -0.25 -1.28 16 27 H 0.06 0.61 7.71 -51.92 -0.40 0.21 16 28 H 0.08 1.16 6.37 -51.93 -0.33 0.83 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.10 1.65 5.99 -51.93 -0.31 1.34 16 32 H 0.40 3.41 7.23 -40.82 -0.30 3.12 16 33 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.09 0.64 7.88 -51.93 -0.41 0.23 16 35 H 0.12 1.54 7.31 -51.92 -0.38 1.16 16 36 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 40 H 0.40 3.42 5.64 -40.82 -0.23 3.19 16 41 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 42 H 0.10 1.63 8.14 -51.92 -0.42 1.20 16 43 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 44 H 0.12 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.10 0.53 5.95 -51.93 -0.31 0.22 16 47 H 0.10 0.66 7.99 -51.93 -0.42 0.24 16 48 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 399.34 15.07 6.02 6.02 Total: -1.00 -34.94 399.34 -9.62 -44.56 By element: Atomic # 1 Polarization: 14.53 SS G_CDS: -7.72 Total: 6.80 kcal Atomic # 6 Polarization: -6.12 SS G_CDS: -1.61 Total: -7.73 kcal Atomic # 7 Polarization: -42.44 SS G_CDS: 0.25 Total: -42.19 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.15 Total: -19.12 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.71 Total: 17.06 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.40 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.94 -9.62 -44.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759377870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.356 kcal (2) G-P(sol) polarization free energy of solvation -34.943 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds