Wall clock time and date at job start Sat Apr 11 2020 06:02:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53006 * 109.46834 * 2 1 4 4 N 1.46498 * 109.47152 * 179.97438 * 3 2 1 5 5 C 1.34777 * 120.00094 * 179.97438 * 4 3 2 6 6 O 1.21273 * 120.00024 * 0.02562 * 5 4 3 7 7 C 1.50700 * 119.99951 * 180.02562 * 5 4 3 8 8 C 1.52996 * 109.47373 * 180.02562 * 7 5 4 9 9 C 1.52996 * 117.50199 * 243.62442 * 8 7 5 10 10 C 1.52997 * 60.00035 * 252.50469 * 9 8 7 11 11 N 1.46500 * 109.47282 * 120.00062 * 2 1 3 12 12 C 1.34775 * 119.99751 * 294.97907 * 11 2 1 13 13 O 1.21286 * 120.00577 * 5.20091 * 12 11 2 14 14 C 1.50705 * 119.99799 * 185.20013 * 12 11 2 15 15 S 1.81002 * 109.46808 * 179.97438 * 14 12 11 16 16 C 1.76203 * 99.99929 * 180.02562 * 15 14 12 17 17 H 1.08007 * 119.99976 * 0.02562 * 16 15 14 18 18 C 1.38796 * 120.00531 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00300 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 119.99680 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46984 * 90.00037 * 20 18 16 22 22 H 1.48497 * 109.47051 * 210.00363 * 20 18 16 23 23 H 1.48497 * 109.47040 * 330.00142 * 20 18 16 24 24 C 1.53000 * 109.47438 * 240.00402 * 2 1 3 25 25 C 1.52998 * 117.49860 * 225.41141 * 24 2 1 26 26 C 1.52997 * 60.00140 * 107.48459 * 25 24 2 27 27 H 1.09009 * 109.46952 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.47442 * 299.99445 * 1 2 3 29 29 H 1.09000 * 109.47377 * 60.00289 * 1 2 3 30 30 H 1.09000 * 109.46902 * 300.00002 * 3 2 1 31 31 H 1.09001 * 109.47150 * 60.00081 * 3 2 1 32 32 H 0.97000 * 119.99909 * 0.02562 * 4 3 2 33 33 H 1.09003 * 109.47113 * 300.00382 * 7 5 4 34 34 H 1.09001 * 109.47019 * 60.00215 * 7 5 4 35 35 H 1.09008 * 115.54524 * 29.32995 * 8 7 5 36 36 H 1.09006 * 117.49867 * 359.97438 * 9 8 7 37 37 H 1.09000 * 117.50078 * 145.01422 * 9 8 7 38 38 H 1.08997 * 117.50379 * 252.50592 * 10 9 8 39 39 H 1.09002 * 117.49621 * 107.48579 * 10 9 8 40 40 H 0.96996 * 120.00066 * 114.98218 * 11 2 1 41 41 H 1.08991 * 109.47155 * 300.00108 * 14 12 11 42 42 H 1.08996 * 109.46870 * 60.00597 * 14 12 11 43 43 H 0.97000 * 119.99925 * 179.97438 * 19 18 16 44 44 H 1.09000 * 115.56262 * 79.71414 * 24 2 1 45 45 H 1.09001 * 117.49841 * 214.97565 * 25 24 2 46 46 H 1.09003 * 117.50125 * 359.97438 * 25 24 2 47 47 H 1.08998 * 117.49625 * 252.50762 * 26 25 24 48 48 H 1.09001 * 117.49908 * 107.49055 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5049 1.4427 0.0006 5 6 4.1787 2.6099 0.0002 6 8 3.5723 3.6601 -0.0002 7 6 5.6857 2.6099 0.0003 8 6 6.1957 4.0524 0.0004 9 6 6.9997 4.5176 -1.2154 10 6 7.7058 4.2679 0.1187 11 7 2.0183 -0.6906 1.1961 12 6 1.7782 -0.1741 2.4176 13 8 1.0786 0.8098 2.5333 14 6 2.3791 -0.8193 3.6399 15 16 1.8764 0.0998 5.1160 16 6 2.6962 -0.8438 6.3579 17 1 3.2883 -1.7034 6.0801 18 6 2.5812 -0.4826 7.6930 19 7 3.1940 -1.1872 8.6207 20 14 1.5577 1.0044 8.1734 21 1 0.1567 0.5808 8.4245 22 1 2.1189 1.6144 9.4055 23 1 1.5839 2.0000 7.0720 24 6 2.0400 -0.7211 -1.2493 25 6 3.1737 -1.7324 -1.0678 26 6 1.7544 -2.2197 -1.3659 27 1 -0.3633 -1.0278 0.0005 28 1 -0.3634 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.6765 1.9564 -0.8900 31 1 1.6765 1.9564 0.8900 32 1 3.9899 0.6026 0.0006 33 1 6.0490 2.0964 0.8904 34 1 6.0491 2.0958 -0.8896 35 1 5.5440 4.7814 0.4822 36 1 7.1656 3.7958 -2.0152 37 1 6.8769 5.5528 -1.5338 38 1 8.0477 5.1387 0.6780 39 1 8.3360 3.3819 0.1965 40 1 2.5145 -1.5195 1.1090 41 1 2.0298 -1.8490 3.7161 42 1 3.4660 -0.8093 3.5588 43 1 3.1139 -0.9345 9.5538 44 1 2.0313 -0.1342 -2.1677 45 1 3.9110 -1.8107 -1.8669 46 1 3.5566 -1.8836 -0.0585 47 1 1.2033 -2.6918 -0.5526 48 1 1.5579 -2.6187 -2.3610 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759377870.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:07 Heat of formation + Delta-G solvation = -48.837180 kcal Electronic energy + Delta-G solvation = -27858.017410 eV Core-core repulsion = 24039.857189 eV Total energy + Delta-G solvation = -3818.160221 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.82792 -40.53244 -38.96520 -37.95230 -35.79991 -34.70164 -34.61201 -32.89469 -30.69769 -30.04351 -27.85345 -27.11287 -24.49354 -23.23330 -23.21251 -22.26877 -22.18480 -21.02167 -20.36677 -19.95403 -18.39427 -18.28303 -17.39815 -17.11576 -16.86390 -16.54154 -16.42951 -16.07313 -15.79076 -15.69747 -15.14108 -15.00014 -14.85264 -14.54180 -14.35150 -14.18746 -13.90860 -13.80980 -13.35980 -13.29959 -13.07976 -12.93748 -12.85783 -12.54320 -12.39727 -12.32961 -12.31663 -12.20230 -11.88663 -11.31242 -11.20656 -11.18588 -11.12153 -11.00491 -10.81244 -10.77585 -10.52458 -10.16063 -9.99552 -8.99516 -8.52964 -6.22577 0.97787 1.28678 1.45121 1.53160 1.57075 1.67273 2.09333 2.22641 2.27653 2.70906 2.85425 2.85781 2.93660 3.45747 3.57039 3.76317 3.76906 3.87000 3.99322 4.06305 4.14332 4.17629 4.21823 4.37879 4.40098 4.44094 4.48451 4.56014 4.65288 4.71167 4.76992 4.80456 4.82306 4.87682 4.91778 5.05103 5.11065 5.20648 5.27486 5.28396 5.30282 5.33664 5.44981 5.54234 5.69794 6.10421 6.45652 6.56392 6.93080 7.20630 7.28749 8.59385 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.008199 B = 0.003606 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3414.375746 B = 7762.912835 C = 9990.270886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.207 3.793 3 C 0.112 3.888 4 N -0.709 5.709 5 C 0.506 3.494 6 O -0.590 6.590 7 C -0.101 4.101 8 C -0.166 4.166 9 C -0.173 4.173 10 C -0.169 4.169 11 N -0.709 5.709 12 C 0.538 3.462 13 O -0.546 6.546 14 C -0.112 4.112 15 S -0.177 6.177 16 C -0.526 4.526 17 H 0.064 0.936 18 C 0.048 3.952 19 N -0.916 5.916 20 Si 0.910 3.090 21 H -0.262 1.262 22 H -0.260 1.260 23 H -0.241 1.241 24 C -0.161 4.161 25 C -0.177 4.177 26 C -0.166 4.166 27 H 0.074 0.926 28 H 0.046 0.954 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.412 0.588 33 H 0.109 0.891 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.111 0.889 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.414 0.586 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.277 0.723 44 H 0.129 0.871 45 H 0.119 0.881 46 H 0.100 0.900 47 H 0.093 0.907 48 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.443 -1.281 -27.391 27.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.121 3.879 3 C -0.013 4.013 4 N -0.361 5.361 5 C 0.294 3.706 6 O -0.470 6.470 7 C -0.140 4.140 8 C -0.184 4.184 9 C -0.209 4.209 10 C -0.206 4.206 11 N -0.367 5.367 12 C 0.324 3.676 13 O -0.423 6.423 14 C -0.263 4.263 15 S 0.049 5.951 16 C -0.674 4.674 17 H 0.082 0.918 18 C -0.157 4.157 19 N -0.554 5.554 20 Si 0.733 3.267 21 H -0.187 1.187 22 H -0.184 1.184 23 H -0.165 1.165 24 C -0.180 4.180 25 C -0.214 4.214 26 C -0.203 4.203 27 H 0.092 0.908 28 H 0.065 0.935 29 H 0.100 0.900 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.249 0.751 33 H 0.127 0.873 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.130 0.870 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.255 0.745 41 H 0.130 0.870 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.147 0.853 45 H 0.137 0.863 46 H 0.118 0.882 47 H 0.111 0.889 48 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.912 1.035 -27.024 27.326 hybrid contribution 0.636 -1.236 0.971 1.696 sum 4.547 -0.201 -26.053 26.448 Atomic orbital electron populations 1.22086 0.93257 1.03266 1.02863 1.19962 0.94556 0.89640 0.83783 1.21656 0.80566 0.96919 1.02138 1.45743 1.06765 1.08841 1.74774 1.21265 0.91595 0.83111 0.74665 1.90675 1.71652 1.33180 1.51491 1.21239 0.89252 0.97195 1.06311 1.21967 0.94719 0.96769 1.04977 1.23121 1.03260 1.02767 0.91792 1.23084 0.93138 1.04161 1.00205 1.46107 1.58644 1.28159 1.03816 1.19893 0.79753 0.83479 0.84495 1.90680 1.38050 1.27241 1.86350 1.23286 1.05122 1.03719 0.94164 1.84823 1.68484 1.42091 0.99673 1.22458 1.35444 1.15925 0.93555 0.91755 1.25490 0.95755 0.99016 0.95453 1.70005 1.43150 1.40588 1.01648 0.85926 0.79786 0.80933 0.80087 1.18702 1.18398 1.16497 1.22409 1.05460 0.92792 0.97296 1.23207 0.92359 1.01892 1.03920 1.23056 0.98671 0.94426 1.04160 0.90756 0.93458 0.90044 0.90806 0.92956 0.75144 0.87272 0.85554 0.89971 0.87046 0.89185 0.88776 0.86874 0.74514 0.86968 0.86963 0.91391 0.85326 0.86271 0.88189 0.88872 0.87015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.18 8.37 71.98 0.60 -2.58 16 2 C 0.21 3.77 0.52 3.60 0.00 3.78 16 3 C 0.11 2.75 4.30 86.38 0.37 3.13 16 4 N -0.71 -14.75 5.18 -463.06 -2.40 -17.14 16 5 C 0.51 12.93 7.83 87.66 0.69 13.61 16 6 O -0.59 -21.22 15.56 -3.01 -0.05 -21.26 16 7 C -0.10 -1.74 5.98 29.85 0.18 -1.56 16 8 C -0.17 -3.39 5.41 -10.80 -0.06 -3.45 16 9 C -0.17 -2.68 10.18 30.59 0.31 -2.37 16 10 C -0.17 -2.58 10.25 30.59 0.31 -2.27 16 11 N -0.71 -14.28 4.49 -422.91 -1.90 -16.18 16 12 C 0.54 17.08 7.26 87.66 0.64 17.71 16 13 O -0.55 -22.06 12.10 -3.05 -0.04 -22.10 16 14 C -0.11 -4.00 6.16 71.24 0.44 -3.56 16 15 S -0.18 -8.85 18.55 -56.49 -1.05 -9.90 16 16 C -0.53 -30.27 10.04 67.95 0.68 -29.59 16 17 H 0.06 3.87 8.03 -2.91 -0.02 3.85 16 18 C 0.05 2.83 5.50 84.86 0.47 3.30 16 19 N -0.92 -55.49 13.97 21.65 0.30 -55.19 16 20 Si 0.91 45.40 27.74 68.60 1.90 47.31 16 21 H -0.26 -12.76 7.11 99.48 0.71 -12.06 16 22 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 23 H -0.24 -12.15 6.74 99.48 0.67 -11.48 16 24 C -0.16 -1.68 4.48 -10.79 -0.05 -1.73 16 25 C -0.18 -1.19 8.98 30.59 0.27 -0.91 16 26 C -0.17 -1.35 9.53 30.59 0.29 -1.05 16 27 H 0.07 1.32 7.71 -2.38 -0.02 1.30 16 28 H 0.05 1.34 6.37 -2.39 -0.02 1.32 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.84 5.99 -2.39 -0.01 1.82 16 32 H 0.41 5.93 7.23 -92.71 -0.67 5.26 16 33 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.13 1.28 7.88 -2.39 -0.02 1.26 16 35 H 0.08 2.29 7.31 -2.38 -0.02 2.27 16 36 H 0.11 1.29 8.03 -2.38 -0.02 1.27 16 37 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.11 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.41 5.80 5.64 -92.71 -0.52 5.28 16 41 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 42 H 0.11 3.65 8.14 -2.40 -0.02 3.63 16 43 H 0.28 15.54 8.31 -92.71 -0.77 14.77 16 44 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.12 0.46 8.14 -2.39 -0.02 0.44 16 46 H 0.10 0.64 5.95 -2.39 -0.01 0.63 16 47 H 0.09 0.91 7.99 -2.39 -0.02 0.89 16 48 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 Total: -1.00 -80.41 399.34 1.67 -78.74 By element: Atomic # 1 Polarization: 23.54 SS G_CDS: -0.25 Total: 23.29 kcal Atomic # 6 Polarization: -12.70 SS G_CDS: 5.15 Total: -7.55 kcal Atomic # 7 Polarization: -84.52 SS G_CDS: -3.99 Total: -88.52 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -0.08 Total: -43.36 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.31 kcal Atomic # 16 Polarization: -8.85 SS G_CDS: -1.05 Total: -9.90 kcal Total: -80.41 1.67 -78.74 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759377870.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.900 kcal (2) G-P(sol) polarization free energy of solvation -80.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds