Wall clock time and date at job start Sat Apr 11 2020 06:02:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46861 * 2 1 4 4 N 1.46498 * 109.46967 * 299.99690 * 3 2 1 5 5 C 1.34774 * 119.99863 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99947 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00172 * 180.02562 * 5 4 3 8 8 C 1.52995 * 109.47460 * 179.97438 * 7 5 4 9 9 C 1.53005 * 117.49837 * 243.62043 * 8 7 5 10 10 C 1.52996 * 117.50136 * 174.99722 * 8 7 5 11 11 N 1.46493 * 109.47373 * 239.99882 * 2 1 3 12 12 C 1.34778 * 119.99861 * 174.51626 * 11 2 1 13 13 O 1.21280 * 120.00484 * 5.19765 * 12 11 2 14 14 C 1.50704 * 119.99837 * 185.19946 * 12 11 2 15 15 S 1.81000 * 109.47037 * 179.97438 * 14 12 11 16 16 C 1.76203 * 99.99921 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00144 * 0.02562 * 16 15 14 18 18 C 1.38796 * 119.99820 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00207 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99845 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46848 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47045 * 119.99926 * 20 18 16 23 23 H 1.48505 * 109.46873 * 239.99818 * 20 18 16 24 24 C 1.53008 * 109.47202 * 119.99501 * 2 1 3 25 25 C 1.52993 * 117.49770 * 122.32676 * 24 2 1 26 26 C 1.52996 * 117.49586 * 53.66983 * 24 2 1 27 27 H 1.09003 * 109.47061 * 60.00285 * 1 2 3 28 28 H 1.09003 * 109.46685 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47218 * 300.00031 * 1 2 3 30 30 H 1.09004 * 109.46886 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47230 * 59.99977 * 3 2 1 32 32 H 0.97000 * 119.99623 * 0.02562 * 4 3 2 33 33 H 1.09005 * 109.46911 * 299.99497 * 7 5 4 34 34 H 1.09000 * 109.46918 * 59.99451 * 7 5 4 35 35 H 1.09001 * 115.55029 * 29.32271 * 8 7 5 36 36 H 1.09003 * 117.49854 * 359.97438 * 9 8 7 37 37 H 1.08994 * 117.49526 * 145.01620 * 9 8 7 38 38 H 1.09000 * 117.50461 * 214.97485 * 10 8 7 39 39 H 1.09002 * 117.50100 * 0.02562 * 10 8 7 40 40 H 0.96991 * 119.99981 * 354.51171 * 11 2 1 41 41 H 1.09002 * 109.47150 * 299.99669 * 14 12 11 42 42 H 1.08996 * 109.46971 * 59.99968 * 14 12 11 43 43 H 0.97001 * 120.00291 * 179.97438 * 19 18 16 44 44 H 1.08998 * 115.54898 * 268.00243 * 24 2 1 45 45 H 1.08999 * 117.49978 * 0.02562 * 25 24 2 46 46 H 1.09002 * 117.49420 * 145.01958 * 25 24 2 47 47 H 1.08998 * 117.49894 * 214.98091 * 26 24 2 48 48 H 1.09005 * 117.50041 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8776 3.4233 -1.4097 6 8 2.5748 4.0127 -0.6114 7 6 1.3748 4.1338 -2.6399 8 6 1.8848 5.5763 -2.6400 9 6 0.8433 6.6938 -2.5539 10 6 1.5792 6.4336 -3.8698 11 7 2.0183 -0.6906 -1.1961 12 6 3.3384 -0.7180 -1.4666 13 8 4.1298 -0.2537 -0.6735 14 6 3.8311 -1.3255 -2.7548 15 16 5.6362 -1.2109 -2.8242 16 6 5.9312 -1.9716 -4.3859 17 1 5.1021 -2.3357 -4.9745 18 6 7.2291 -2.1029 -4.8597 19 7 8.2396 -1.6588 -4.1427 20 14 7.5418 -2.9088 -6.5158 21 1 6.2482 -3.3186 -7.1189 22 1 8.2242 -1.9437 -7.4149 23 1 8.4018 -4.1051 -6.3296 24 6 2.0400 -0.7212 1.2494 25 6 2.9597 -1.9264 1.0433 26 6 1.5175 -2.1350 1.5117 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 0.8899 32 1 0.9937 1.6617 -1.8345 33 1 1.7375 3.6198 -3.5301 34 1 0.2848 4.1342 -2.6393 35 1 2.8391 5.7375 -2.1387 36 1 -0.2052 6.4014 -2.4975 37 1 1.1124 7.5904 -1.9956 38 1 2.3322 7.1592 -4.1774 39 1 1.0144 5.9701 -4.6787 40 1 1.3917 -1.1282 -1.7933 41 1 3.5311 -2.3724 -2.8009 42 1 3.4005 -0.7866 -3.5986 43 1 9.1468 -1.7509 -4.4736 44 1 2.2290 -0.0859 2.1146 45 1 3.2018 -2.2053 0.0178 46 1 3.7536 -2.0841 1.7733 47 1 1.3631 -2.4300 2.5495 48 1 0.8106 -2.5516 0.7940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001759377871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:10 Heat of formation + Delta-G solvation = -20.787163 kcal Electronic energy + Delta-G solvation = -27845.421475 eV Core-core repulsion = 24028.477594 eV Total energy + Delta-G solvation = -3816.943881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.74988 -39.50413 -37.36385 -37.07103 -35.19117 -33.43583 -32.44569 -31.41729 -29.70103 -28.65764 -26.71687 -25.49539 -23.23332 -22.54558 -22.18343 -21.26940 -20.90759 -20.12828 -19.27593 -17.87538 -17.55519 -16.44599 -16.43283 -16.01875 -15.87323 -15.21991 -14.87724 -14.82344 -14.70210 -14.22771 -14.01520 -13.93691 -13.49325 -13.33635 -12.98412 -12.87069 -12.79399 -12.44355 -12.32806 -11.99434 -11.70610 -11.63344 -11.54662 -11.36474 -11.14033 -11.08138 -11.03335 -10.77632 -10.52851 -10.33728 -10.18811 -10.11471 -9.82355 -9.76746 -9.34601 -9.09593 -8.99561 -8.82468 -8.24293 -6.51081 -6.23342 -3.93751 2.70021 2.93952 3.05196 3.12600 3.19956 3.26367 3.30307 3.62959 3.66285 3.86660 4.18502 4.50141 4.53564 4.57898 4.67960 4.68851 4.75525 4.96976 5.05323 5.09960 5.11990 5.18957 5.21201 5.23823 5.36101 5.45270 5.45991 5.51794 5.54778 5.58236 5.62862 5.71584 5.72870 5.79991 5.83895 5.92858 6.02467 6.08967 6.15438 6.17297 6.19083 6.31282 6.43270 6.64737 7.48049 7.57816 7.66225 8.26988 8.33325 8.59978 9.22170 10.83967 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007788 B = 0.003597 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3594.249952 B = 7781.881281 C =10612.150445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.200 3.800 3 C 0.108 3.892 4 N -0.725 5.725 5 C 0.515 3.485 6 O -0.536 6.536 7 C -0.110 4.110 8 C -0.138 4.138 9 C -0.180 4.180 10 C -0.180 4.180 11 N -0.737 5.737 12 C 0.534 3.466 13 O -0.498 6.498 14 C -0.156 4.156 15 S -0.055 6.055 16 C -0.536 4.536 17 H 0.072 0.928 18 C 0.074 3.926 19 N -0.866 5.866 20 Si 0.917 3.083 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.154 4.154 25 C -0.149 4.149 26 C -0.182 4.182 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.075 0.925 30 H 0.100 0.900 31 H 0.070 0.930 32 H 0.396 0.604 33 H 0.098 0.902 34 H 0.091 0.909 35 H 0.119 0.881 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.397 0.603 41 H 0.086 0.914 42 H 0.087 0.913 43 H 0.268 0.732 44 H 0.108 0.892 45 H 0.099 0.901 46 H 0.091 0.909 47 H 0.090 0.910 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.702 6.403 5.261 23.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.113 3.887 3 C -0.016 4.016 4 N -0.377 5.377 5 C 0.301 3.699 6 O -0.412 6.412 7 C -0.150 4.150 8 C -0.157 4.157 9 C -0.217 4.217 10 C -0.217 4.217 11 N -0.392 5.392 12 C 0.321 3.679 13 O -0.370 6.370 14 C -0.306 4.306 15 S 0.171 5.829 16 C -0.685 4.685 17 H 0.090 0.910 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.744 3.256 21 H -0.196 1.196 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.174 4.174 25 C -0.186 4.186 26 C -0.219 4.219 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.119 0.881 31 H 0.088 0.912 32 H 0.230 0.770 33 H 0.117 0.883 34 H 0.109 0.891 35 H 0.137 0.863 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.114 0.886 39 H 0.112 0.888 40 H 0.231 0.769 41 H 0.105 0.895 42 H 0.105 0.895 43 H 0.078 0.922 44 H 0.126 0.874 45 H 0.117 0.883 46 H 0.110 0.890 47 H 0.108 0.892 48 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -19.660 7.655 7.185 22.287 hybrid contribution -1.255 -1.584 -2.605 3.297 sum -20.915 6.071 4.580 22.255 Atomic orbital electron populations 1.22053 0.93027 1.02941 1.02895 1.19915 0.93455 0.90592 0.84762 1.21813 1.02662 0.89767 0.87364 1.45882 1.54019 1.12059 1.25737 1.20517 0.80196 0.81604 0.87597 1.90702 1.37356 1.66071 1.47106 1.21214 1.01663 0.95060 0.97078 1.22052 1.01260 0.90099 1.02280 1.23023 0.97291 1.00567 1.00803 1.22997 1.03692 1.03399 0.91644 1.46237 1.08054 1.58455 1.26495 1.20155 0.81510 0.78642 0.87626 1.90713 1.54264 1.44173 1.47889 1.23569 1.07212 1.03014 0.96829 1.85446 0.91748 1.79005 1.26664 1.22900 0.95368 1.45125 1.05073 0.90987 1.24984 0.95051 0.95339 0.98170 1.70022 0.99191 1.43647 1.37302 0.86138 0.78387 0.78932 0.82161 1.19645 1.20551 1.20566 1.22396 1.05745 0.90775 0.98484 1.23007 0.92303 1.00150 1.03124 1.22991 0.98521 0.98700 1.01724 0.92111 0.91396 0.90625 0.88148 0.91192 0.77010 0.88331 0.89087 0.86274 0.89020 0.88843 0.88633 0.88784 0.76913 0.89535 0.89488 0.92220 0.87360 0.88254 0.89021 0.89191 0.89194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 8.18 37.16 0.30 -0.72 16 2 C 0.20 2.05 0.55 -131.82 -0.07 1.97 16 3 C 0.11 1.39 4.25 -4.04 -0.02 1.37 16 4 N -0.72 -8.13 5.13 -60.29 -0.31 -8.44 16 5 C 0.51 6.82 7.83 -10.99 -0.09 6.74 16 6 O -0.54 -9.49 15.56 5.56 0.09 -9.40 16 7 C -0.11 -1.07 5.98 -27.89 -0.17 -1.24 16 8 C -0.14 -1.49 5.41 -90.62 -0.49 -1.98 16 9 C -0.18 -1.59 10.18 -26.73 -0.27 -1.86 16 10 C -0.18 -1.57 10.25 -26.73 -0.27 -1.84 16 11 N -0.74 -8.27 4.19 -47.60 -0.20 -8.47 16 12 C 0.53 8.89 5.11 -10.98 -0.06 8.83 16 13 O -0.50 -10.17 11.80 5.56 0.07 -10.11 16 14 C -0.16 -2.95 6.16 36.01 0.22 -2.73 16 15 S -0.06 -1.46 20.57 -107.50 -2.21 -3.67 16 16 C -0.54 -15.03 9.50 30.94 0.29 -14.74 16 17 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 18 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 20 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 21 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 C -0.15 -1.75 4.81 -90.62 -0.44 -2.19 16 25 C -0.15 -2.01 8.28 -26.70 -0.22 -2.23 16 26 C -0.18 -1.81 9.68 -26.70 -0.26 -2.07 16 27 H 0.06 0.33 6.86 -51.93 -0.36 -0.02 16 28 H 0.07 0.41 6.92 -51.93 -0.36 0.05 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.10 1.77 5.96 -51.93 -0.31 1.46 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.40 3.32 7.15 -40.82 -0.29 3.03 16 33 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 34 H 0.09 0.65 7.87 -51.93 -0.41 0.24 16 35 H 0.12 1.58 7.31 -51.93 -0.38 1.21 16 36 H 0.09 0.69 8.03 -51.93 -0.42 0.28 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.40 3.32 8.48 -40.82 -0.35 2.98 16 41 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 42 H 0.09 1.54 8.14 -51.92 -0.42 1.11 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.11 1.23 8.06 -51.93 -0.42 0.81 16 45 H 0.10 1.55 5.12 -51.93 -0.27 1.28 16 46 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 47 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.09 0.80 7.21 -51.93 -0.37 0.42 16 LS Contribution 399.53 15.07 6.02 6.02 Total: -1.00 -35.44 399.53 -10.16 -45.61 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: -7.70 Total: 8.20 kcal Atomic # 6 Polarization: -9.06 SS G_CDS: -1.63 Total: -10.69 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 0.23 Total: -42.16 kcal Atomic # 8 Polarization: -19.66 SS G_CDS: 0.15 Total: -19.51 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.46 SS G_CDS: -2.21 Total: -3.67 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.44 -10.16 -45.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759377871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.821 kcal (2) G-P(sol) polarization free energy of solvation -35.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds