Wall clock time and date at job start Sat Apr 11 2020 06:02:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53005 * 109.46861 * 2 1 4 4 N 1.46498 * 109.46967 * 299.99690 * 3 2 1 5 5 C 1.34774 * 119.99863 * 180.02562 * 4 3 2 6 6 O 1.21283 * 119.99947 * 359.97438 * 5 4 3 7 7 C 1.50700 * 120.00172 * 180.02562 * 5 4 3 8 8 C 1.52995 * 109.47460 * 179.97438 * 7 5 4 9 9 C 1.53005 * 117.49837 * 243.62043 * 8 7 5 10 10 C 1.52996 * 117.50136 * 174.99722 * 8 7 5 11 11 N 1.46493 * 109.47373 * 239.99882 * 2 1 3 12 12 C 1.34778 * 119.99861 * 174.51626 * 11 2 1 13 13 O 1.21280 * 120.00484 * 5.19765 * 12 11 2 14 14 C 1.50704 * 119.99837 * 185.19946 * 12 11 2 15 15 S 1.81000 * 109.47037 * 179.97438 * 14 12 11 16 16 C 1.76203 * 99.99921 * 180.02562 * 15 14 12 17 17 H 1.07995 * 120.00144 * 0.02562 * 16 15 14 18 18 C 1.38796 * 119.99820 * 180.02562 * 16 15 14 19 19 N 1.31628 * 120.00207 * 359.97438 * 18 16 15 20 20 Si 1.86806 * 119.99845 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46848 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47045 * 119.99926 * 20 18 16 23 23 H 1.48505 * 109.46873 * 239.99818 * 20 18 16 24 24 C 1.53008 * 109.47202 * 119.99501 * 2 1 3 25 25 C 1.52993 * 117.49770 * 122.32676 * 24 2 1 26 26 C 1.52996 * 117.49586 * 53.66983 * 24 2 1 27 27 H 1.09003 * 109.47061 * 60.00285 * 1 2 3 28 28 H 1.09003 * 109.46685 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47218 * 300.00031 * 1 2 3 30 30 H 1.09004 * 109.46886 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47230 * 59.99977 * 3 2 1 32 32 H 0.97000 * 119.99623 * 0.02562 * 4 3 2 33 33 H 1.09005 * 109.46911 * 299.99497 * 7 5 4 34 34 H 1.09000 * 109.46918 * 59.99451 * 7 5 4 35 35 H 1.09001 * 115.55029 * 29.32271 * 8 7 5 36 36 H 1.09003 * 117.49854 * 359.97438 * 9 8 7 37 37 H 1.08994 * 117.49526 * 145.01620 * 9 8 7 38 38 H 1.09000 * 117.50461 * 214.97485 * 10 8 7 39 39 H 1.09002 * 117.50100 * 0.02562 * 10 8 7 40 40 H 0.96991 * 119.99981 * 354.51171 * 11 2 1 41 41 H 1.09002 * 109.47150 * 299.99669 * 14 12 11 42 42 H 1.08996 * 109.46971 * 59.99968 * 14 12 11 43 43 H 0.97001 * 120.00291 * 179.97438 * 19 18 16 44 44 H 1.08998 * 115.54898 * 268.00243 * 24 2 1 45 45 H 1.08999 * 117.49978 * 0.02562 * 25 24 2 46 46 H 1.09002 * 117.49420 * 145.01958 * 25 24 2 47 47 H 1.08998 * 117.49894 * 214.98091 * 26 24 2 48 48 H 1.09005 * 117.50041 * 0.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 1.5516 2.1331 -1.1962 5 6 1.8776 3.4233 -1.4097 6 8 2.5748 4.0127 -0.6114 7 6 1.3748 4.1338 -2.6399 8 6 1.8848 5.5763 -2.6400 9 6 0.8433 6.6938 -2.5539 10 6 1.5792 6.4336 -3.8698 11 7 2.0183 -0.6906 -1.1961 12 6 3.3384 -0.7180 -1.4666 13 8 4.1298 -0.2537 -0.6735 14 6 3.8311 -1.3255 -2.7548 15 16 5.6362 -1.2109 -2.8242 16 6 5.9312 -1.9716 -4.3859 17 1 5.1021 -2.3357 -4.9745 18 6 7.2291 -2.1029 -4.8597 19 7 8.2396 -1.6588 -4.1427 20 14 7.5418 -2.9088 -6.5158 21 1 6.2482 -3.3186 -7.1189 22 1 8.2242 -1.9437 -7.4149 23 1 8.4018 -4.1051 -6.3296 24 6 2.0400 -0.7212 1.2494 25 6 2.9597 -1.9264 1.0433 26 6 1.5175 -2.1350 1.5117 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 3.1300 1.4426 0.0005 31 1 1.6766 1.9564 0.8899 32 1 0.9937 1.6617 -1.8345 33 1 1.7375 3.6198 -3.5301 34 1 0.2848 4.1342 -2.6393 35 1 2.8391 5.7375 -2.1387 36 1 -0.2052 6.4014 -2.4975 37 1 1.1124 7.5904 -1.9956 38 1 2.3322 7.1592 -4.1774 39 1 1.0144 5.9701 -4.6787 40 1 1.3917 -1.1282 -1.7933 41 1 3.5311 -2.3724 -2.8009 42 1 3.4005 -0.7866 -3.5986 43 1 9.1468 -1.7509 -4.4736 44 1 2.2290 -0.0859 2.1146 45 1 3.2018 -2.2053 0.0178 46 1 3.7536 -2.0841 1.7733 47 1 1.3631 -2.4300 2.5495 48 1 0.8106 -2.5516 0.7940 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001759377871.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:09 Heat of formation + Delta-G solvation = -45.468503 kcal Electronic energy + Delta-G solvation = -27846.491738 eV Core-core repulsion = 24028.477594 eV Total energy + Delta-G solvation = -3818.014144 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.84767 -40.57509 -38.46963 -37.94331 -36.22411 -34.61096 -34.55143 -32.50495 -30.60938 -29.91270 -27.69107 -27.52285 -24.14915 -23.21725 -23.12338 -22.38513 -21.94457 -21.08268 -20.30666 -19.82669 -18.50871 -17.81292 -17.51136 -17.05486 -16.88417 -16.82467 -16.38276 -16.02356 -15.85377 -15.56435 -15.02636 -14.83437 -14.74753 -14.56616 -14.39370 -13.96403 -13.70172 -13.43840 -13.32047 -13.15341 -13.11641 -12.92422 -12.57965 -12.49949 -12.38998 -12.32164 -12.27358 -12.08755 -11.69955 -11.32440 -11.28580 -11.16080 -11.14192 -10.98207 -10.76833 -10.57196 -10.23597 -10.10849 -9.96106 -8.64699 -8.34831 -6.11849 1.27608 1.40328 1.47515 1.57616 1.66629 1.72002 2.13733 2.26191 2.31966 2.91325 2.96025 2.99557 3.33794 3.64321 3.72004 3.76523 3.82872 3.84862 4.05204 4.06285 4.17386 4.20233 4.24392 4.32748 4.47023 4.49909 4.52812 4.58620 4.67386 4.77433 4.80374 4.81095 4.86157 4.89944 5.02200 5.05628 5.10042 5.22307 5.27678 5.27766 5.30761 5.33493 5.41537 5.45553 5.61761 6.19469 6.55844 6.61376 7.06818 7.29892 7.37344 8.74348 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.007788 B = 0.003597 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3594.249952 B = 7781.881281 C =10612.150445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.207 3.793 3 C 0.112 3.888 4 N -0.710 5.710 5 C 0.505 3.495 6 O -0.591 6.591 7 C -0.099 4.099 8 C -0.167 4.167 9 C -0.172 4.172 10 C -0.168 4.168 11 N -0.709 5.709 12 C 0.539 3.461 13 O -0.541 6.541 14 C -0.131 4.131 15 S -0.151 6.151 16 C -0.544 4.544 17 H 0.082 0.918 18 C 0.012 3.988 19 N -0.912 5.912 20 Si 0.997 3.003 21 H -0.254 1.254 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.159 4.159 25 C -0.184 4.184 26 C -0.144 4.144 27 H 0.081 0.919 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.047 0.953 31 H 0.071 0.929 32 H 0.413 0.587 33 H 0.110 0.890 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.093 0.907 39 H 0.114 0.886 40 H 0.417 0.583 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.270 0.730 44 H 0.103 0.897 45 H 0.077 0.923 46 H 0.070 0.930 47 H 0.105 0.895 48 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.294 5.346 3.313 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.121 3.879 3 C -0.013 4.013 4 N -0.362 5.362 5 C 0.293 3.707 6 O -0.472 6.472 7 C -0.138 4.138 8 C -0.186 4.186 9 C -0.209 4.209 10 C -0.205 4.205 11 N -0.365 5.365 12 C 0.325 3.675 13 O -0.417 6.417 14 C -0.283 4.283 15 S 0.076 5.924 16 C -0.692 4.692 17 H 0.101 0.899 18 C -0.192 4.192 19 N -0.549 5.549 20 Si 0.819 3.181 21 H -0.178 1.178 22 H -0.201 1.201 23 H -0.201 1.201 24 C -0.178 4.178 25 C -0.222 4.222 26 C -0.180 4.180 27 H 0.099 0.901 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.065 0.935 31 H 0.090 0.910 32 H 0.251 0.749 33 H 0.128 0.872 34 H 0.147 0.853 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.133 0.867 40 H 0.255 0.745 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.079 0.921 44 H 0.121 0.879 45 H 0.096 0.904 46 H 0.088 0.912 47 H 0.123 0.877 48 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -24.340 6.563 5.209 25.742 hybrid contribution 0.138 -1.211 -1.890 2.249 sum -24.201 5.351 3.320 25.007 Atomic orbital electron populations 1.22064 0.88905 1.04769 1.04457 1.20007 0.96077 0.88334 0.83520 1.21614 0.99621 0.91852 0.88230 1.45760 1.53448 1.11547 1.25491 1.21301 0.79288 0.81970 0.88109 1.90683 1.39846 1.67394 1.49246 1.21235 1.03688 0.93745 0.95169 1.21972 1.00670 0.91676 1.04305 1.23126 0.97813 0.99393 1.00562 1.23086 1.03440 1.02332 0.91666 1.45904 1.06214 1.57391 1.26969 1.19793 0.83061 0.78209 0.86425 1.90729 1.55945 1.46126 1.48930 1.23407 1.01011 1.04796 0.99043 1.85665 0.99738 1.79510 1.27440 1.23236 0.96018 1.44827 1.05086 0.89946 1.26120 0.94718 0.95842 1.02548 1.70197 0.99741 1.45333 1.39644 0.84931 0.78862 0.77708 0.76607 1.17792 1.20070 1.20063 1.22478 1.05196 0.91288 0.98878 1.22865 0.94261 1.03479 1.01583 1.23084 0.95507 0.96411 1.03022 0.90054 0.89391 0.89661 0.93459 0.91036 0.74938 0.87217 0.85334 0.90202 0.86909 0.89251 0.88849 0.86741 0.74477 0.87658 0.87576 0.92119 0.87898 0.90414 0.91160 0.87680 0.86912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 8.18 71.98 0.59 -0.70 16 2 C 0.21 3.85 0.55 3.61 0.00 3.85 16 3 C 0.11 2.88 4.25 86.38 0.37 3.24 16 4 N -0.71 -15.07 5.13 -463.06 -2.37 -17.44 16 5 C 0.51 13.37 7.83 87.66 0.69 14.06 16 6 O -0.59 -22.22 15.56 -3.04 -0.05 -22.27 16 7 C -0.10 -1.75 5.98 29.85 0.18 -1.57 16 8 C -0.17 -3.57 5.41 -10.79 -0.06 -3.63 16 9 C -0.17 -2.77 10.18 30.60 0.31 -2.46 16 10 C -0.17 -2.65 10.25 30.59 0.31 -2.34 16 11 N -0.71 -14.45 4.19 -422.91 -1.77 -16.22 16 12 C 0.54 17.99 5.11 87.66 0.45 18.44 16 13 O -0.54 -23.42 11.80 -3.03 -0.04 -23.45 16 14 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 15 S -0.15 -8.27 20.57 -56.49 -1.16 -9.43 16 16 C -0.54 -30.78 9.50 67.95 0.65 -30.14 16 17 H 0.08 4.32 7.80 -2.91 -0.02 4.29 16 18 C 0.01 0.70 5.49 84.86 0.47 1.16 16 19 N -0.91 -56.48 13.22 21.65 0.29 -56.19 16 20 Si 1.00 43.51 29.55 68.60 2.03 45.53 16 21 H -0.25 -10.25 7.11 99.48 0.71 -9.55 16 22 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 23 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 24 C -0.16 -3.47 4.81 -10.79 -0.05 -3.52 16 25 C -0.18 -5.06 8.28 30.61 0.25 -4.81 16 26 C -0.14 -2.47 9.68 30.61 0.30 -2.17 16 27 H 0.08 0.44 6.86 -2.39 -0.02 0.42 16 28 H 0.09 0.52 6.92 -2.39 -0.02 0.50 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.05 1.78 5.96 -2.39 -0.01 1.77 16 31 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.41 5.62 7.15 -92.71 -0.66 4.96 16 33 H 0.11 1.70 8.14 -2.38 -0.02 1.69 16 34 H 0.13 1.30 7.87 -2.39 -0.02 1.28 16 35 H 0.08 2.33 7.31 -2.39 -0.02 2.31 16 36 H 0.11 1.33 8.03 -2.39 -0.02 1.31 16 37 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 38 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.42 5.30 8.48 -92.71 -0.79 4.51 16 41 H 0.11 3.55 8.14 -2.39 -0.02 3.53 16 42 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 43 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.10 2.35 8.06 -2.39 -0.02 2.33 16 45 H 0.08 2.47 5.12 -2.39 -0.01 2.46 16 46 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 47 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 48 H 0.11 1.46 7.21 -2.38 -0.02 1.44 16 Total: -1.00 -85.89 399.53 1.34 -84.55 By element: Atomic # 1 Polarization: 30.44 SS G_CDS: -0.47 Total: 29.97 kcal Atomic # 6 Polarization: -19.94 SS G_CDS: 4.89 Total: -15.05 kcal Atomic # 7 Polarization: -85.99 SS G_CDS: -3.86 Total: -89.85 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.08 Total: -45.72 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.53 kcal Atomic # 16 Polarization: -8.27 SS G_CDS: -1.16 Total: -9.43 kcal Total: -85.89 1.34 -84.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001759377871.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.084 kcal (2) G-P(sol) polarization free energy of solvation -85.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds