Wall clock time and date at job start Sat Apr 11 2020 06:02:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 115.54771 * 2 1 4 4 C 1.53006 * 117.49823 * 214.29311 * 2 1 3 5 5 C 1.52999 * 59.99886 * 252.50950 * 4 2 1 6 6 H 1.08997 * 117.51808 * 107.48025 * 5 4 2 7 7 C 1.50706 * 117.49765 * 252.51411 * 5 4 2 8 8 O 1.21274 * 120.00042 * 68.34419 * 7 5 4 9 9 N 1.34777 * 119.99766 * 248.61954 * 7 5 4 10 10 C 1.46496 * 120.00266 * 179.97438 * 9 7 5 11 11 C 1.53002 * 109.47425 * 180.02562 * 10 9 7 12 12 C 1.52997 * 109.46965 * 180.02562 * 11 10 9 13 13 H 1.09003 * 110.89350 * 54.29449 * 12 11 10 14 14 C 1.55155 * 111.00495 * 178.18026 * 12 11 10 15 15 C 1.54316 * 102.94548 * 153.57086 * 14 12 11 16 16 N 1.47013 * 107.27221 * 337.80779 * 15 14 12 17 17 C 1.34787 * 125.65012 * 178.99438 * 16 15 14 18 18 O 1.21281 * 119.99891 * 179.97438 * 17 16 15 19 19 C 1.50699 * 119.99716 * 359.97438 * 17 16 15 20 20 S 1.80997 * 109.46977 * 179.97438 * 19 17 16 21 21 C 1.76196 * 100.00014 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00003 * 0.02562 * 21 20 19 23 23 C 1.38803 * 120.00075 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00102 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 120.00008 * 359.97438 * 23 21 20 26 26 H 1.48508 * 109.46686 * 90.00268 * 25 23 21 27 27 H 1.48495 * 109.47630 * 210.00044 * 25 23 21 28 28 H 1.48504 * 109.47000 * 330.00713 * 25 23 21 29 29 C 1.47470 * 108.72316 * 358.97321 * 16 15 14 30 30 H 1.09000 * 109.46882 * 274.32625 * 1 2 3 31 31 H 1.09003 * 109.47534 * 34.33258 * 1 2 3 32 32 H 1.08997 * 109.47247 * 154.33299 * 1 2 3 33 33 H 1.08998 * 117.49360 * 145.01764 * 4 2 1 34 34 H 1.09000 * 117.49560 * 359.97438 * 4 2 1 35 35 H 0.96999 * 120.00043 * 0.02562 * 9 7 5 36 36 H 1.09004 * 109.47212 * 300.00463 * 10 9 7 37 37 H 1.09000 * 109.46684 * 60.00307 * 10 9 7 38 38 H 1.09000 * 109.46497 * 300.00014 * 11 10 9 39 39 H 1.08987 * 109.47025 * 60.00130 * 11 10 9 40 40 H 1.08997 * 110.71933 * 271.93660 * 14 12 11 41 41 H 1.09002 * 110.71819 * 35.20396 * 14 12 11 42 42 H 1.09001 * 109.88440 * 97.22695 * 15 14 12 43 43 H 1.09000 * 109.88461 * 218.38891 * 15 14 12 44 44 H 1.08997 * 109.47217 * 299.99527 * 19 17 16 45 45 H 1.09002 * 109.46991 * 59.99876 * 19 17 16 46 46 H 0.96996 * 119.99665 * 180.02562 * 24 23 21 47 47 H 1.09003 * 110.34912 * 265.25207 * 29 16 15 48 48 H 1.08999 * 110.40628 * 142.91549 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0000 0.9834 0.0000 4 6 2.2364 -1.1213 -0.7647 5 6 2.2364 -1.1208 0.7653 6 1 1.6112 -1.8578 1.2692 7 6 3.5293 -0.7805 1.4610 8 8 3.9743 0.3458 1.3968 9 7 4.1938 -1.7294 2.1499 10 6 5.4508 -1.3990 2.8257 11 6 5.9953 -2.6447 3.5277 12 6 7.3078 -2.2993 4.2340 13 1 7.1767 -1.4498 4.9043 14 6 7.8690 -3.5283 4.9969 15 6 9.3863 -3.2496 5.0329 16 7 9.6853 -2.3188 3.9349 17 6 10.9005 -1.8150 3.6410 18 8 11.0309 -1.0520 2.7074 19 6 12.0969 -2.2000 4.4725 20 16 13.5702 -1.3665 3.8317 21 6 14.7810 -1.9776 4.9565 22 1 14.4923 -2.6598 5.7425 23 6 16.1057 -1.5824 4.8324 24 7 17.0103 -2.0393 5.6724 25 14 16.6052 -0.4031 3.4725 26 1 16.4936 0.9941 3.9633 27 1 18.0085 -0.6761 3.0711 28 1 15.7102 -0.5896 2.3022 29 6 8.4359 -2.0277 3.2076 30 1 -0.3633 0.0775 1.0248 31 1 -0.3634 0.8486 -0.5796 32 1 -0.3633 -0.9262 -0.4451 33 1 3.1715 -0.8755 -1.2681 34 1 1.6111 -1.8591 -1.2674 35 1 3.8401 -2.6314 2.1976 36 1 6.1769 -1.0493 2.0918 37 1 5.2723 -0.6154 3.5621 38 1 5.2693 -2.9947 4.2615 39 1 6.1739 -3.4279 2.7911 40 1 7.4613 -3.5744 6.0067 41 1 7.6587 -4.4490 4.4526 42 1 9.6577 -2.7971 5.9867 43 1 9.9375 -4.1792 4.8912 44 1 11.9313 -1.9012 5.5075 45 1 12.2406 -3.2794 4.4244 46 1 17.9360 -1.7627 5.5859 47 1 8.3344 -2.6903 2.3481 48 1 8.4157 -0.9856 2.8888 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001059198640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:30 Heat of formation + Delta-G solvation = -62.827943 kcal Electronic energy + Delta-G solvation = -25918.176492 eV Core-core repulsion = 22099.409586 eV Total energy + Delta-G solvation = -3818.766906 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.44898 -39.93612 -37.87224 -37.23912 -35.55566 -33.12425 -32.43372 -30.47590 -29.71047 -29.23905 -27.54414 -25.63075 -24.98540 -23.64802 -22.33420 -21.39514 -20.88142 -20.14869 -19.42841 -17.85094 -17.73123 -16.73922 -16.58010 -16.30846 -15.84643 -15.28799 -15.06119 -14.98143 -14.70211 -14.44226 -14.02693 -13.91550 -13.74619 -13.60400 -13.27368 -13.17835 -12.91332 -12.78691 -12.57004 -12.54557 -12.45092 -11.96874 -11.91755 -11.80906 -11.45257 -11.24716 -11.03524 -11.01336 -10.98392 -10.86478 -10.59447 -10.59018 -10.16162 -9.85052 -9.52468 -9.47006 -8.99674 -8.58336 -8.49074 -6.91580 -6.28527 -4.00258 2.11310 2.65194 2.71954 2.95166 3.21137 3.33574 3.34347 3.51809 3.60866 4.03959 4.14579 4.25536 4.28828 4.31424 4.34046 4.36768 4.60898 4.65733 4.74819 4.82274 4.83138 4.97382 5.05399 5.10680 5.11998 5.13977 5.21551 5.23060 5.25847 5.29797 5.43699 5.44639 5.55308 5.55772 5.58447 5.60611 5.65901 5.74423 5.82209 5.86223 5.94704 6.01662 6.02210 6.34281 7.07589 7.57860 7.84915 7.94543 8.41685 8.44153 9.17808 10.80667 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.023408 B = 0.001660 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1195.885938 B =16864.650452 C =17824.201100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.118 0.882 4 C -0.149 4.149 5 C -0.194 4.194 6 H 0.123 0.877 7 C 0.540 3.460 8 O -0.537 6.537 9 N -0.728 5.728 10 C 0.114 3.886 11 C -0.117 4.117 12 C -0.100 4.100 13 H 0.090 0.910 14 C -0.124 4.124 15 C 0.100 3.900 16 N -0.626 5.626 17 C 0.546 3.454 18 O -0.517 6.517 19 C -0.117 4.117 20 S -0.143 6.143 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.096 3.904 24 N -0.880 5.880 25 Si 0.856 3.144 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 C 0.111 3.889 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.100 0.900 34 H 0.105 0.895 35 H 0.401 0.599 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.096 0.904 45 H 0.096 0.904 46 H 0.271 0.729 47 H 0.066 0.934 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -34.900 -5.344 -5.626 35.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.136 0.864 4 C -0.186 4.186 5 C -0.215 4.215 6 H 0.141 0.859 7 C 0.327 3.673 8 O -0.414 6.414 9 N -0.379 5.379 10 C -0.009 4.009 11 C -0.156 4.156 12 C -0.119 4.119 13 H 0.108 0.892 14 C -0.162 4.162 15 C -0.024 4.024 16 N -0.363 5.363 17 C 0.335 3.665 18 O -0.392 6.392 19 C -0.268 4.268 20 S 0.084 5.916 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.112 4.112 24 N -0.517 5.517 25 Si 0.681 3.319 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 C -0.012 4.012 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.077 0.923 33 H 0.118 0.882 34 H 0.123 0.877 35 H 0.235 0.765 36 H 0.090 0.910 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.097 0.903 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.114 0.886 45 H 0.114 0.886 46 H 0.081 0.919 47 H 0.084 0.916 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -34.065 -3.363 -7.004 34.940 hybrid contribution 0.257 -1.064 0.919 1.429 sum -33.809 -4.427 -6.085 34.636 Atomic orbital electron populations 1.21408 0.92133 1.02330 1.02249 1.22396 0.95290 0.95149 1.01239 0.86421 1.23124 1.03286 1.01579 0.90603 1.22311 0.97727 1.05549 0.95909 0.85922 1.19700 0.84723 0.84693 0.78215 1.90730 1.68417 1.21186 1.61029 1.45922 1.24845 1.13454 1.53703 1.21462 0.85086 0.97648 0.96697 1.21718 0.96540 0.97424 0.99871 1.22317 0.93277 0.99055 0.97288 0.89150 1.22682 0.94065 0.98048 1.01414 1.22026 0.95930 0.93634 0.90783 1.48466 1.07278 1.47902 1.32662 1.19999 0.82331 0.79694 0.84521 1.90712 1.84110 1.34625 1.29736 1.23252 0.96241 1.04952 1.02330 1.84805 0.99246 1.63019 1.44566 1.22308 0.93944 1.33636 1.16973 0.89404 1.24701 0.95243 0.95449 0.95826 1.69937 1.02408 1.43259 1.36100 0.86741 0.79418 0.81850 0.83893 1.19183 1.19916 1.15921 1.22265 0.82498 1.02037 0.94425 0.91920 0.91549 0.92321 0.88159 0.87690 0.76508 0.90975 0.91185 0.90565 0.90678 0.89801 0.90338 0.91084 0.91087 0.88590 0.88568 0.91944 0.91597 0.90297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 10.19 37.16 0.38 -0.15 16 2 C -0.12 -0.78 5.92 -90.62 -0.54 -1.32 16 3 H 0.12 0.99 7.67 -51.93 -0.40 0.59 16 4 C -0.15 -0.82 9.88 -26.73 -0.26 -1.08 16 5 C -0.19 -1.18 5.91 -91.77 -0.54 -1.72 16 6 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 7 C 0.54 4.93 7.61 -10.98 -0.08 4.84 16 8 O -0.54 -7.36 16.26 5.56 0.09 -7.27 16 9 N -0.73 -4.71 5.56 -60.29 -0.33 -5.05 16 10 C 0.11 0.84 5.55 -4.04 -0.02 0.82 16 11 C -0.12 -0.59 4.84 -26.73 -0.13 -0.72 16 12 C -0.10 -0.72 3.04 -88.47 -0.27 -0.98 16 13 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 14 C -0.12 -0.80 6.42 -24.90 -0.16 -0.96 16 15 C 0.10 0.99 6.49 -3.07 -0.02 0.97 16 16 N -0.63 -8.68 3.33 -170.49 -0.57 -9.24 16 17 C 0.55 10.31 7.87 -10.98 -0.09 10.22 16 18 O -0.52 -11.77 16.12 5.56 0.09 -11.68 16 19 C -0.12 -2.35 5.35 36.01 0.19 -2.16 16 20 S -0.14 -3.70 18.55 -107.50 -1.99 -5.69 16 21 C -0.52 -15.16 10.04 30.94 0.31 -14.85 16 22 H 0.09 2.65 8.03 -52.49 -0.42 2.23 16 23 C 0.10 2.84 5.50 -17.43 -0.10 2.75 16 24 N -0.88 -26.69 13.97 55.49 0.78 -25.91 16 25 Si 0.86 22.03 27.74 -169.99 -4.71 17.31 16 26 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 27 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 28 H -0.24 -6.06 6.74 56.52 0.38 -5.68 16 29 C 0.11 1.23 5.71 -2.50 -0.01 1.22 16 30 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.06 0.19 7.90 -51.93 -0.41 -0.22 16 33 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.10 0.37 8.05 -51.93 -0.42 -0.04 16 35 H 0.40 1.36 8.47 -40.82 -0.35 1.01 16 36 H 0.07 0.67 7.59 -51.93 -0.39 0.28 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.07 0.34 8.03 -51.94 -0.42 -0.08 16 40 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.08 0.43 8.04 -51.93 -0.42 0.01 16 42 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.10 1.80 8.14 -51.92 -0.42 1.38 16 45 H 0.10 1.80 8.14 -51.91 -0.42 1.38 16 46 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 47 H 0.07 0.70 7.96 -51.93 -0.41 0.29 16 48 H 0.08 1.01 8.00 -51.93 -0.42 0.60 16 LS Contribution 408.53 15.07 6.16 6.16 Total: -1.00 -37.38 408.53 -10.12 -47.50 By element: Atomic # 1 Polarization: 5.28 SS G_CDS: -8.28 Total: -3.00 kcal Atomic # 6 Polarization: -1.79 SS G_CDS: -1.34 Total: -3.13 kcal Atomic # 7 Polarization: -40.08 SS G_CDS: -0.13 Total: -40.21 kcal Atomic # 8 Polarization: -19.12 SS G_CDS: 0.18 Total: -18.94 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -4.71 Total: 17.31 kcal Atomic # 16 Polarization: -3.70 SS G_CDS: -1.99 Total: -5.69 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -37.38 -10.12 -47.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001059198640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.325 kcal (2) G-P(sol) polarization free energy of solvation -37.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds