Wall clock time and date at job start Sat Apr 11 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08994 * 115.56862 * 2 1 4 4 C 1.53076 * 117.49081 * 214.28921 * 2 1 3 5 5 C 1.52994 * 59.98574 * 252.51520 * 4 2 1 6 6 H 1.09002 * 117.49828 * 107.50219 * 5 4 2 7 7 C 1.50701 * 117.50082 * 252.49850 * 5 4 2 8 8 O 1.21279 * 120.00027 * 68.74881 * 7 5 4 9 9 N 1.34781 * 119.99978 * 248.74591 * 7 5 4 10 10 C 1.46495 * 120.00014 * 179.97438 * 9 7 5 11 11 H 1.09001 * 109.48804 * 325.05150 * 10 9 7 12 12 C 1.52567 * 109.49312 * 205.00171 * 10 9 7 13 13 C 1.47086 * 114.32564 * 155.02036 * 12 10 9 14 14 C 1.54867 * 110.32036 * 62.80489 * 13 12 10 15 15 N 1.44575 * 109.60150 * 288.72800 * 14 13 12 16 16 C 1.34780 * 118.64372 * 270.72693 * 15 14 13 17 17 O 1.21285 * 119.99792 * 179.97438 * 16 15 14 18 18 C 1.50697 * 120.00078 * 0.02562 * 16 15 14 19 19 S 1.81003 * 109.47162 * 179.97438 * 18 16 15 20 20 C 1.76192 * 99.99898 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00328 * 359.97438 * 20 19 18 22 22 C 1.38803 * 119.99861 * 180.02562 * 20 19 18 23 23 N 1.31627 * 120.00150 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99997 * 179.97438 * 22 20 19 25 25 H 1.48494 * 109.46980 * 90.00351 * 24 22 20 26 26 H 1.48501 * 109.47073 * 210.00241 * 24 22 20 27 27 H 1.48497 * 109.46931 * 330.00237 * 24 22 20 28 28 C 1.47606 * 122.71046 * 90.72593 * 15 14 13 29 29 C 1.50883 * 109.48675 * 85.11489 * 10 9 7 30 30 H 1.09000 * 109.47092 * 274.31018 * 1 2 3 31 31 H 1.09008 * 109.47225 * 34.30949 * 1 2 3 32 32 H 1.08998 * 109.47488 * 154.30818 * 1 2 3 33 33 H 1.09005 * 117.51274 * 145.03780 * 4 2 1 34 34 H 1.09003 * 117.49646 * 0.02562 * 4 2 1 35 35 H 0.97001 * 119.99969 * 0.02562 * 9 7 5 36 36 H 1.09005 * 108.50695 * 33.76744 * 12 10 9 37 37 H 1.09000 * 108.51136 * 276.27826 * 12 10 9 38 38 H 1.09002 * 109.33298 * 302.54332 * 13 12 10 39 39 H 1.08996 * 109.32775 * 183.06140 * 13 12 10 40 40 H 1.09001 * 109.45105 * 48.77191 * 14 13 12 41 41 H 1.09004 * 109.44700 * 168.68983 * 14 13 12 42 42 H 1.08999 * 109.47016 * 300.00186 * 18 16 15 43 43 H 1.09008 * 109.47138 * 59.99878 * 18 16 15 44 44 H 0.96998 * 120.00176 * 180.02562 * 23 22 20 45 45 H 1.09002 * 108.94736 * 197.18490 * 28 15 14 46 46 H 1.09003 * 108.87380 * 78.51067 * 28 15 14 47 47 H 1.08995 * 109.36631 * 332.04480 * 29 10 9 48 48 H 1.09000 * 109.36471 * 91.78818 * 29 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9832 0.0000 4 6 2.2366 -1.1219 -0.7650 5 6 2.2364 -1.1211 0.7649 6 1 1.6111 -1.8583 1.2686 7 6 3.5292 -0.7813 1.4608 8 8 3.9710 0.3467 1.4025 9 7 4.1945 -1.7309 2.1479 10 6 5.4516 -1.4008 2.8238 11 1 5.9999 -0.6665 2.2336 12 6 6.2945 -2.6633 2.9763 13 6 7.7403 -2.4168 3.0875 14 6 8.0490 -1.5935 4.3623 15 7 7.5851 -0.2355 4.1869 16 6 8.4247 0.6692 3.6454 17 8 8.0609 1.8152 3.4866 18 6 9.8152 0.2565 3.2363 19 16 10.6900 1.6836 2.5477 20 6 12.2392 0.9369 2.1643 21 1 12.4001 -0.1106 2.3726 22 6 13.2532 1.6951 1.5956 23 7 13.0577 2.9720 1.3430 24 14 14.8959 0.9036 1.1898 25 1 14.8587 0.3680 -0.1947 26 1 15.9747 1.9183 1.2991 27 1 15.1602 -0.2045 2.1423 28 6 6.2299 0.2011 4.5763 29 6 5.1544 -0.8299 4.1885 30 1 -0.3633 0.0772 1.0248 31 1 -0.3634 0.8489 -0.5793 32 1 -0.3634 -0.9260 -0.4455 33 1 3.1718 -0.8767 -1.2683 34 1 1.6112 -1.8593 -1.2683 35 1 3.8414 -2.6332 2.1942 36 1 6.1180 -3.3037 2.1121 37 1 5.9642 -3.1942 3.8692 38 1 8.0808 -1.8657 2.2109 39 1 8.2660 -3.3703 3.1377 40 1 7.5420 -2.0428 5.2162 41 1 9.1244 -1.5896 4.5402 42 1 10.3548 -0.1155 4.1072 43 1 9.7542 -0.5297 2.4837 44 1 13.7662 3.5018 0.9452 45 1 6.0075 1.1472 4.0828 46 1 6.2042 0.3505 5.6557 47 1 4.1782 -0.3454 4.1728 48 1 5.1465 -1.6351 4.9232 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001066373349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:25 Heat of formation + Delta-G solvation = -53.718702 kcal Electronic energy + Delta-G solvation = -27640.526846 eV Core-core repulsion = 23822.154947 eV Total energy + Delta-G solvation = -3818.371900 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.66367 -39.74450 -37.85602 -36.73958 -34.95429 -33.04946 -32.39610 -32.14294 -29.29586 -28.80930 -26.72768 -25.58349 -25.37046 -23.78454 -22.00980 -21.21810 -20.81818 -20.08216 -18.82124 -17.65046 -17.63355 -16.89725 -16.46606 -16.09209 -15.32392 -15.14767 -14.89433 -14.77893 -14.37904 -14.36167 -13.99424 -13.90197 -13.64602 -13.40657 -13.23319 -13.05694 -12.74100 -12.64810 -12.39439 -12.36179 -11.89276 -11.78446 -11.73326 -11.43121 -11.12368 -11.04020 -11.00298 -10.89532 -10.81817 -10.72424 -10.68886 -10.40785 -9.91073 -9.76764 -9.33244 -9.23889 -9.03544 -8.43203 -8.16793 -6.45749 -6.18148 -3.88353 2.32752 2.85788 2.98950 3.13269 3.24005 3.28141 3.32120 3.50704 3.65349 4.23275 4.32278 4.35556 4.42851 4.47042 4.54808 4.79129 4.82982 4.89127 4.97650 4.98525 5.07319 5.16586 5.21834 5.26693 5.30940 5.36264 5.39469 5.40101 5.49706 5.58696 5.61301 5.64434 5.71150 5.76160 5.79541 5.88989 5.94383 5.98271 5.99716 6.05578 6.13469 6.22529 6.34097 6.78152 7.30719 7.60698 7.62920 8.09292 8.38230 8.64308 9.26771 10.89256 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.014418 B = 0.002490 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.596706 B =11244.468202 C =11919.914940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.123 4.123 3 H 0.119 0.881 4 C -0.150 4.150 5 C -0.192 4.192 6 H 0.121 0.879 7 C 0.538 3.462 8 O -0.527 6.527 9 N -0.726 5.726 10 C 0.146 3.854 11 H 0.095 0.905 12 C -0.120 4.120 13 C -0.141 4.141 14 C 0.111 3.889 15 N -0.616 5.616 16 C 0.528 3.472 17 O -0.512 6.512 18 C -0.149 4.149 19 S -0.062 6.062 20 C -0.534 4.534 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 C 0.117 3.883 29 C -0.136 4.136 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.397 0.603 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.075 0.925 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.094 0.906 46 H 0.061 0.939 47 H 0.078 0.922 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.453 -17.028 3.049 29.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.141 4.141 3 H 0.137 0.863 4 C -0.187 4.187 5 C -0.214 4.214 6 H 0.139 0.861 7 C 0.324 3.676 8 O -0.403 6.403 9 N -0.377 5.377 10 C 0.042 3.958 11 H 0.113 0.887 12 C -0.158 4.158 13 C -0.180 4.180 14 C -0.013 4.013 15 N -0.352 5.352 16 C 0.316 3.684 17 O -0.386 6.386 18 C -0.300 4.300 19 S 0.164 5.836 20 C -0.682 4.682 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.502 5.502 24 Si 0.744 3.256 25 H -0.203 1.203 26 H -0.208 1.208 27 H -0.197 1.197 28 C -0.006 4.006 29 C -0.176 4.176 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.122 0.878 35 H 0.231 0.769 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.103 0.897 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.112 0.888 46 H 0.079 0.921 47 H 0.096 0.904 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.602 -14.330 2.728 27.746 hybrid contribution 1.324 -2.546 0.036 2.869 sum -22.278 -16.875 2.764 28.084 Atomic orbital electron populations 1.21399 0.92218 1.02224 1.02176 1.22411 0.95197 0.95262 1.01251 0.86318 1.23125 1.03302 1.01566 0.90700 1.22310 0.97780 1.05421 0.95848 0.86083 1.19711 0.84732 0.84939 0.78197 1.90784 1.67950 1.20820 1.60705 1.46086 1.24699 1.13201 1.53688 1.20476 0.84131 0.97728 0.93470 0.88686 1.20678 0.95914 0.96697 1.02501 1.21269 0.95597 1.01242 0.99876 1.21566 1.00800 0.81918 0.97057 1.47724 1.13457 1.09908 1.64112 1.20429 0.86636 0.85191 0.76182 1.90702 1.76451 1.18901 1.52554 1.23590 0.95411 1.06887 1.04098 1.85456 1.10719 1.08658 1.78737 1.22852 0.98974 0.98509 1.47887 0.90989 1.24994 0.98852 0.94784 0.94998 1.70021 1.33638 1.06046 1.40534 0.86181 0.81727 0.78865 0.78794 1.20303 1.20773 1.19714 1.21669 0.80612 0.98698 0.99607 1.22159 0.99464 0.99279 0.96652 0.91971 0.91572 0.92424 0.88142 0.87815 0.76881 0.91572 0.91638 0.90899 0.90103 0.90623 0.89689 0.89317 0.89295 0.92212 0.88811 0.92058 0.90390 0.91498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.75 10.19 37.16 0.38 -0.37 16 2 C -0.12 -1.05 5.92 -90.58 -0.54 -1.58 16 3 H 0.12 1.29 7.67 -51.93 -0.40 0.90 16 4 C -0.15 -1.14 9.88 -26.69 -0.26 -1.40 16 5 C -0.19 -1.58 5.91 -91.77 -0.54 -2.12 16 6 H 0.12 0.68 8.14 -51.93 -0.42 0.26 16 7 C 0.54 6.26 7.43 -10.98 -0.08 6.18 16 8 O -0.53 -8.86 15.92 5.56 0.09 -8.77 16 9 N -0.73 -6.58 4.93 -55.06 -0.27 -6.85 16 10 C 0.15 1.57 2.06 -69.22 -0.14 1.43 16 11 H 0.10 1.47 6.92 -51.93 -0.36 1.11 16 12 C -0.12 -0.98 4.69 -29.79 -0.14 -1.12 16 13 C -0.14 -1.35 5.62 -28.59 -0.16 -1.51 16 14 C 0.11 1.18 5.17 -4.09 -0.02 1.16 16 15 N -0.62 -8.94 2.24 -172.53 -0.39 -9.33 16 16 C 0.53 10.45 7.64 -10.99 -0.08 10.37 16 17 O -0.51 -12.39 15.14 5.55 0.08 -12.31 16 18 C -0.15 -3.10 4.65 36.00 0.17 -2.93 16 19 S -0.06 -1.74 20.57 -107.50 -2.21 -3.95 16 20 C -0.53 -15.38 9.50 30.94 0.29 -15.09 16 21 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 22 C 0.07 2.11 5.49 -17.43 -0.10 2.01 16 23 N -0.87 -26.56 13.22 55.49 0.73 -25.83 16 24 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 25 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 26 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 27 H -0.27 -6.20 7.11 56.52 0.40 -5.79 16 28 C 0.12 1.55 6.10 -2.94 -0.02 1.53 16 29 C -0.14 -1.40 5.39 -27.30 -0.15 -1.54 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.07 0.38 8.14 -51.92 -0.42 -0.05 16 32 H 0.06 0.28 7.90 -51.93 -0.41 -0.13 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.10 0.56 8.05 -51.93 -0.42 0.14 16 35 H 0.40 2.27 8.60 -40.82 -0.35 1.92 16 36 H 0.07 0.49 8.04 -51.93 -0.42 0.07 16 37 H 0.06 0.41 7.36 -51.93 -0.38 0.03 16 38 H 0.07 0.89 7.28 -51.93 -0.38 0.52 16 39 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 41 H 0.08 0.93 6.26 -51.93 -0.32 0.61 16 42 H 0.09 1.69 7.30 -51.92 -0.38 1.31 16 43 H 0.09 1.71 7.08 -51.91 -0.37 1.34 16 44 H 0.27 7.62 8.31 -40.82 -0.34 7.29 16 45 H 0.09 1.57 6.95 -51.93 -0.36 1.20 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.85 7.85 -51.93 -0.41 0.44 16 48 H 0.07 0.53 7.32 -51.93 -0.38 0.15 16 LS Contribution 396.14 15.07 5.97 5.97 Total: -1.00 -37.39 396.14 -10.24 -47.63 By element: Atomic # 1 Polarization: 9.66 SS G_CDS: -7.83 Total: 1.82 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: -1.39 Total: -4.97 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.08 Total: -42.01 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: 0.17 Total: -21.07 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.74 SS G_CDS: -2.21 Total: -3.95 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.39 -10.24 -47.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001066373349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.087 kcal (2) G-P(sol) polarization free energy of solvation -37.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds