Wall clock time and date at job start Sat Apr 11 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.52594 * 2 1 4 4 C 1.53192 * 109.49973 * 120.08157 * 2 1 3 5 5 N 1.46926 * 108.77820 * 174.58470 * 4 2 1 6 6 C 1.34779 * 120.63009 * 126.41120 * 5 4 2 7 7 O 1.21283 * 119.99759 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00151 * 180.02562 * 6 5 4 9 9 S 1.80996 * 109.47397 * 180.02562 * 8 6 5 10 10 C 1.76204 * 99.99993 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99933 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99679 * 180.02562 * 10 9 8 13 13 N 1.31629 * 120.00239 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99785 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46869 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47211 * 119.99726 * 14 12 10 17 17 H 1.48497 * 109.46991 * 239.99830 * 14 12 10 18 18 C 1.46925 * 118.73914 * 306.39111 * 5 4 2 19 19 C 1.53191 * 108.77423 * 53.60547 * 18 5 4 20 20 C 1.53037 * 109.31499 * 305.36620 * 19 18 5 21 21 H 1.08997 * 109.46287 * 181.37171 * 20 19 18 22 22 N 1.46499 * 109.45974 * 301.34317 * 20 19 18 23 23 C 1.34770 * 120.00170 * 274.99978 * 22 20 19 24 24 O 1.21280 * 119.99932 * 359.97438 * 23 22 20 25 25 C 1.50704 * 120.00098 * 179.97438 * 23 22 20 26 26 C 1.53002 * 109.46989 * 180.02562 * 25 23 22 27 27 C 1.53000 * 117.49861 * 243.62109 * 26 25 23 28 28 C 1.53005 * 60.00133 * 252.51253 * 27 26 25 29 29 H 1.09001 * 109.47163 * 299.91965 * 1 2 3 30 30 H 1.08995 * 109.47442 * 59.91927 * 1 2 3 31 31 H 1.09005 * 109.47363 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.58809 * 54.79804 * 4 2 1 33 33 H 1.09002 * 109.58657 * 294.37791 * 4 2 1 34 34 H 1.09003 * 109.47023 * 300.00663 * 8 6 5 35 35 H 1.09004 * 109.46964 * 59.99901 * 8 6 5 36 36 H 0.97003 * 119.99858 * 180.02562 * 13 12 10 37 37 H 1.08998 * 109.58340 * 173.39503 * 18 5 4 38 38 H 1.09005 * 109.58474 * 293.81790 * 18 5 4 39 39 H 1.08997 * 109.49512 * 65.31959 * 19 18 5 40 40 H 1.09005 * 109.49659 * 185.37937 * 19 18 5 41 41 H 0.97009 * 119.99821 * 95.00347 * 22 20 19 42 42 H 1.08998 * 109.47009 * 300.00171 * 25 23 22 43 43 H 1.09006 * 109.47066 * 60.00070 * 25 23 22 44 44 H 1.08997 * 115.55105 * 29.33521 * 26 25 23 45 45 H 1.08999 * 117.50001 * 0.02562 * 27 26 25 46 46 H 1.08997 * 117.50216 * 145.02368 * 27 26 25 47 47 H 1.08996 * 117.49442 * 252.50838 * 28 27 26 48 48 H 1.09001 * 117.49648 * 107.48987 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8292 1.1695 6 6 4.2811 -0.3864 2.1782 7 8 3.7731 0.1042 3.1642 8 6 5.7806 -0.5010 2.0810 9 16 6.5359 0.1747 3.5807 10 6 8.2389 -0.0794 3.2067 11 1 8.5239 -0.5351 2.2700 12 6 9.2141 0.3063 4.1160 13 7 8.8667 0.8623 5.2574 14 14 11.0196 0.0377 3.7193 15 1 11.1434 -0.5995 2.3836 16 1 11.7246 1.3446 3.7120 17 1 11.6260 -0.8462 4.7470 18 6 4.1053 -1.4268 -0.0308 19 6 3.5708 -0.6951 -1.2660 20 6 2.0408 -0.7232 -1.2483 21 1 1.6581 -0.2244 -2.1387 22 7 1.5783 -2.1131 -1.2308 23 6 1.4488 -2.7949 -2.3861 24 8 1.7147 -2.2576 -3.4403 25 6 0.9736 -4.2249 -2.3680 26 6 0.9160 -4.7614 -3.7997 27 6 -0.4548 -5.1601 -4.3501 28 6 0.5672 -6.2393 -3.9869 29 1 -0.3633 0.5126 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6052 -1.7217 1.2980 33 1 1.7637 -0.1580 2.1389 34 1 6.0588 -1.5496 1.9752 35 1 6.1321 0.0575 1.2134 36 1 9.5483 1.1321 5.8927 37 1 5.1895 -1.3247 0.0138 38 1 3.8375 -2.4819 -0.0867 39 1 3.9159 0.3387 -1.2541 40 1 3.9338 -1.1895 -2.1671 41 1 1.3652 -2.5428 -0.3875 42 1 1.6647 -4.8300 -1.7812 43 1 -0.0198 -4.2721 -1.9217 44 1 1.6295 -4.3206 -4.4959 45 1 -1.3156 -5.0398 -3.6924 46 1 -0.6434 -4.9816 -5.4087 47 1 1.0507 -6.7707 -4.8065 48 1 0.3786 -6.8294 -3.0900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073617063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:27 Heat of formation + Delta-G solvation = -57.712242 kcal Electronic energy + Delta-G solvation = -27437.307856 eV Core-core repulsion = 23618.762784 eV Total energy + Delta-G solvation = -3818.545073 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.87840 -39.55164 -37.96103 -37.09228 -34.54040 -33.25157 -32.44683 -31.59559 -29.63413 -29.50299 -26.60118 -25.58074 -25.03009 -22.84069 -22.74359 -21.86587 -20.43400 -20.21844 -18.94108 -17.85850 -17.59169 -16.70674 -16.32406 -16.05483 -15.78049 -15.48843 -14.85711 -14.82008 -14.63637 -14.59250 -14.08536 -14.01863 -13.83107 -13.64621 -13.19326 -13.04350 -12.79948 -12.66369 -12.32648 -12.08535 -12.00464 -11.90953 -11.83861 -11.67126 -11.26168 -11.21502 -11.08423 -11.02938 -10.80258 -10.76224 -10.70305 -10.43055 -10.03310 -9.81300 -9.42194 -9.33141 -9.09143 -8.56541 -8.24516 -6.52291 -6.23576 -3.94237 2.38151 2.81039 2.89608 3.00258 3.20363 3.24703 3.29890 3.43443 3.56361 4.18244 4.24007 4.27691 4.36639 4.51066 4.53838 4.58485 4.72244 4.83588 4.85855 4.99089 5.00687 5.11033 5.11773 5.15673 5.19864 5.25358 5.27071 5.29617 5.45939 5.47595 5.51339 5.58058 5.64939 5.70693 5.72354 5.77330 5.83570 5.85376 5.90403 5.92621 5.95347 6.09117 6.24970 6.57177 7.19628 7.49176 7.58311 7.95637 8.33633 8.50759 9.22000 10.83847 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.002273 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.499509 B =12314.310047 C =13405.231600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 H 0.092 0.908 4 C 0.117 3.883 5 N -0.620 5.620 6 C 0.536 3.464 7 O -0.516 6.516 8 C -0.151 4.151 9 S -0.061 6.061 10 C -0.534 4.534 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.111 3.889 19 C -0.147 4.147 20 C 0.153 3.847 21 H 0.091 0.909 22 N -0.724 5.724 23 C 0.517 3.483 24 O -0.538 6.538 25 C -0.112 4.112 26 C -0.140 4.140 27 C -0.179 4.179 28 C -0.181 4.181 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.268 0.732 37 H 0.091 0.909 38 H 0.065 0.935 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.399 0.601 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.118 0.882 45 H 0.093 0.907 46 H 0.094 0.906 47 H 0.095 0.905 48 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.418 -10.619 -17.048 27.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.135 4.135 3 H 0.110 0.890 4 C -0.006 4.006 5 N -0.357 5.357 6 C 0.324 3.676 7 O -0.390 6.390 8 C -0.301 4.301 9 S 0.165 5.835 10 C -0.682 4.682 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.502 5.502 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.205 1.205 17 H -0.206 1.206 18 C -0.013 4.013 19 C -0.187 4.187 20 C 0.048 3.952 21 H 0.109 0.891 22 N -0.377 5.377 23 C 0.303 3.697 24 O -0.414 6.414 25 C -0.152 4.152 26 C -0.158 4.158 27 C -0.216 4.216 28 C -0.218 4.218 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.116 0.884 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.109 0.891 38 H 0.083 0.917 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.235 0.765 42 H 0.116 0.884 43 H 0.111 0.889 44 H 0.136 0.864 45 H 0.111 0.889 46 H 0.112 0.888 47 H 0.114 0.886 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -19.908 -9.416 -16.156 27.313 hybrid contribution 1.685 -0.993 -1.027 2.208 sum -18.223 -10.409 -17.183 27.123 Atomic orbital electron populations 1.21744 0.93864 1.02085 1.02402 1.21821 0.96505 1.00881 0.94260 0.88993 1.21530 0.80230 0.99988 0.98825 1.48118 1.05959 1.62850 1.18741 1.20344 0.88864 0.76517 0.81842 1.90693 1.75015 1.42934 1.30392 1.23553 0.93660 1.05291 1.07607 1.85398 1.02313 1.79091 1.16666 1.22894 0.91160 1.47171 1.07025 0.90899 1.24996 0.99604 0.94545 0.94471 1.70027 1.34045 1.38443 1.07734 0.86118 0.82805 0.78103 0.78482 1.19609 1.20550 1.20561 1.21663 0.99234 0.96635 0.83742 1.22322 0.95434 1.02403 0.98495 1.20941 0.93751 0.81660 0.98841 0.89094 1.46168 1.68504 1.13937 1.09104 1.20565 0.77063 0.88407 0.83630 1.90697 1.49862 1.70192 1.30665 1.21241 1.03235 0.93209 0.97529 1.22047 1.00121 0.97041 0.96630 1.23033 0.92921 1.03661 1.01988 1.23008 1.03802 0.91479 1.03501 0.91919 0.92197 0.92546 0.92290 0.88367 0.89315 0.89250 0.92231 0.89075 0.91685 0.90187 0.90068 0.76545 0.88394 0.88854 0.86368 0.88885 0.88779 0.88647 0.88730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.05 37.16 0.34 -0.65 16 2 C -0.11 -0.98 2.67 -90.50 -0.24 -1.22 16 3 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 4 C 0.12 1.24 5.42 -3.71 -0.02 1.22 16 5 N -0.62 -8.12 2.97 -172.77 -0.51 -8.63 16 6 C 0.54 9.81 7.72 -10.99 -0.08 9.73 16 7 O -0.52 -11.40 15.28 5.55 0.08 -11.32 16 8 C -0.15 -3.00 4.50 36.00 0.16 -2.84 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.53 -15.09 9.50 30.94 0.29 -14.80 16 11 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 12 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 13 N -0.87 -26.00 13.22 55.49 0.73 -25.27 16 14 Si 0.92 21.31 29.55 -169.99 -5.02 16.29 16 15 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 16 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 17 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 18 C 0.11 1.17 6.08 -3.71 -0.02 1.15 16 19 C -0.15 -1.42 5.77 -26.61 -0.15 -1.57 16 20 C 0.15 1.32 2.21 -67.89 -0.15 1.17 16 21 H 0.09 0.90 7.57 -51.93 -0.39 0.50 16 22 N -0.72 -5.27 3.59 -53.77 -0.19 -5.47 16 23 C 0.52 4.51 7.79 -10.99 -0.09 4.42 16 24 O -0.54 -6.79 15.22 5.56 0.08 -6.70 16 25 C -0.11 -0.68 5.98 -27.88 -0.17 -0.85 16 26 C -0.14 -1.02 5.41 -90.62 -0.49 -1.51 16 27 C -0.18 -1.14 10.18 -26.73 -0.27 -1.41 16 28 C -0.18 -1.05 10.25 -26.73 -0.27 -1.33 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.34 7.53 -51.93 -0.39 -0.05 16 32 H 0.06 0.49 6.64 -51.93 -0.34 0.15 16 33 H 0.10 1.24 7.01 -51.93 -0.36 0.88 16 34 H 0.09 1.64 7.94 -51.91 -0.41 1.23 16 35 H 0.09 1.66 7.69 -51.91 -0.40 1.26 16 36 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 37 H 0.09 1.03 5.93 -51.93 -0.31 0.72 16 38 H 0.06 0.60 7.74 -51.93 -0.40 0.20 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.40 2.26 6.73 -40.82 -0.27 1.98 16 42 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.09 0.41 7.88 -51.93 -0.41 0.00 16 44 H 0.12 1.10 7.31 -51.93 -0.38 0.72 16 45 H 0.09 0.51 8.03 -51.93 -0.42 0.09 16 46 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 397.17 15.07 5.99 5.99 Total: -1.00 -35.08 397.17 -10.16 -45.25 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -7.84 Total: 0.24 kcal Atomic # 6 Polarization: -5.24 SS G_CDS: -1.27 Total: -6.51 kcal Atomic # 7 Polarization: -39.39 SS G_CDS: 0.03 Total: -39.37 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.17 Total: -18.02 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.08 -10.16 -45.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073617063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.466 kcal (2) G-P(sol) polarization free energy of solvation -35.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds