Wall clock time and date at job start Sat Apr 11 2020 06:02:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.52594 * 2 1 4 4 C 1.53192 * 109.49973 * 120.08157 * 2 1 3 5 5 N 1.46926 * 108.77820 * 174.58470 * 4 2 1 6 6 C 1.34779 * 120.63009 * 126.41120 * 5 4 2 7 7 O 1.21283 * 119.99759 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00151 * 180.02562 * 6 5 4 9 9 S 1.80996 * 109.47397 * 180.02562 * 8 6 5 10 10 C 1.76204 * 99.99993 * 180.02562 * 9 8 6 11 11 H 1.07995 * 119.99933 * 0.02562 * 10 9 8 12 12 C 1.38799 * 119.99679 * 180.02562 * 10 9 8 13 13 N 1.31629 * 120.00239 * 359.97438 * 12 10 9 14 14 Si 1.86802 * 119.99785 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.46869 * 359.97438 * 14 12 10 16 16 H 1.48499 * 109.47211 * 119.99726 * 14 12 10 17 17 H 1.48497 * 109.46991 * 239.99830 * 14 12 10 18 18 C 1.46925 * 118.73914 * 306.39111 * 5 4 2 19 19 C 1.53191 * 108.77423 * 53.60547 * 18 5 4 20 20 C 1.53037 * 109.31499 * 305.36620 * 19 18 5 21 21 H 1.08997 * 109.46287 * 181.37171 * 20 19 18 22 22 N 1.46499 * 109.45974 * 301.34317 * 20 19 18 23 23 C 1.34770 * 120.00170 * 274.99978 * 22 20 19 24 24 O 1.21280 * 119.99932 * 359.97438 * 23 22 20 25 25 C 1.50704 * 120.00098 * 179.97438 * 23 22 20 26 26 C 1.53002 * 109.46989 * 180.02562 * 25 23 22 27 27 C 1.53000 * 117.49861 * 243.62109 * 26 25 23 28 28 C 1.53005 * 60.00133 * 252.51253 * 27 26 25 29 29 H 1.09001 * 109.47163 * 299.91965 * 1 2 3 30 30 H 1.08995 * 109.47442 * 59.91927 * 1 2 3 31 31 H 1.09005 * 109.47363 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.58809 * 54.79804 * 4 2 1 33 33 H 1.09002 * 109.58657 * 294.37791 * 4 2 1 34 34 H 1.09003 * 109.47023 * 300.00663 * 8 6 5 35 35 H 1.09004 * 109.46964 * 59.99901 * 8 6 5 36 36 H 0.97003 * 119.99858 * 180.02562 * 13 12 10 37 37 H 1.08998 * 109.58340 * 173.39503 * 18 5 4 38 38 H 1.09005 * 109.58474 * 293.81790 * 18 5 4 39 39 H 1.08997 * 109.49512 * 65.31959 * 19 18 5 40 40 H 1.09005 * 109.49659 * 185.37937 * 19 18 5 41 41 H 0.97009 * 119.99821 * 95.00347 * 22 20 19 42 42 H 1.08998 * 109.47009 * 300.00171 * 25 23 22 43 43 H 1.09006 * 109.47066 * 60.00070 * 25 23 22 44 44 H 1.08997 * 115.55105 * 29.33521 * 26 25 23 45 45 H 1.08999 * 117.50001 * 0.02562 * 27 26 25 46 46 H 1.08997 * 117.50216 * 145.02368 * 27 26 25 47 47 H 1.08996 * 117.49442 * 252.50838 * 28 27 26 48 48 H 1.09001 * 117.49648 * 107.48987 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5046 -0.8292 1.1695 6 6 4.2811 -0.3864 2.1782 7 8 3.7731 0.1042 3.1642 8 6 5.7806 -0.5010 2.0810 9 16 6.5359 0.1747 3.5807 10 6 8.2389 -0.0794 3.2067 11 1 8.5239 -0.5351 2.2700 12 6 9.2141 0.3063 4.1160 13 7 8.8667 0.8623 5.2574 14 14 11.0196 0.0377 3.7193 15 1 11.1434 -0.5995 2.3836 16 1 11.7246 1.3446 3.7120 17 1 11.6260 -0.8462 4.7470 18 6 4.1053 -1.4268 -0.0308 19 6 3.5708 -0.6951 -1.2660 20 6 2.0408 -0.7232 -1.2483 21 1 1.6581 -0.2244 -2.1387 22 7 1.5783 -2.1131 -1.2308 23 6 1.4488 -2.7949 -2.3861 24 8 1.7147 -2.2576 -3.4403 25 6 0.9736 -4.2249 -2.3680 26 6 0.9160 -4.7614 -3.7997 27 6 -0.4548 -5.1601 -4.3501 28 6 0.5672 -6.2393 -3.9869 29 1 -0.3633 0.5126 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6052 -1.7217 1.2980 33 1 1.7637 -0.1580 2.1389 34 1 6.0588 -1.5496 1.9752 35 1 6.1321 0.0575 1.2134 36 1 9.5483 1.1321 5.8927 37 1 5.1895 -1.3247 0.0138 38 1 3.8375 -2.4819 -0.0867 39 1 3.9159 0.3387 -1.2541 40 1 3.9338 -1.1895 -2.1671 41 1 1.3652 -2.5428 -0.3875 42 1 1.6647 -4.8300 -1.7812 43 1 -0.0198 -4.2721 -1.9217 44 1 1.6295 -4.3206 -4.4959 45 1 -1.3156 -5.0398 -3.6924 46 1 -0.6434 -4.9816 -5.4087 47 1 1.0507 -6.7707 -4.8065 48 1 0.3786 -6.8294 -3.0900 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073617063.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:27 Heat of formation + Delta-G solvation = -79.579380 kcal Electronic energy + Delta-G solvation = -27438.256087 eV Core-core repulsion = 23618.762784 eV Total energy + Delta-G solvation = -3819.493303 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.76661 -40.56169 -38.91098 -37.76234 -35.58681 -34.59100 -34.01952 -32.43812 -31.05893 -30.09685 -27.78165 -27.31103 -26.10879 -23.64444 -23.20165 -22.52360 -21.33666 -20.97477 -20.09969 -19.46154 -18.49347 -18.00174 -17.13621 -17.01628 -16.88214 -16.65990 -16.51460 -15.89023 -15.66557 -15.37468 -15.23617 -14.94634 -14.71444 -14.52708 -14.45476 -14.30115 -13.84429 -13.55580 -13.39132 -13.16538 -13.05614 -12.92226 -12.83034 -12.66181 -12.53449 -12.36463 -12.29745 -12.06495 -11.98780 -11.71282 -11.56220 -11.26670 -11.16499 -10.94586 -10.88365 -10.69009 -10.27242 -10.07661 -9.67063 -8.67369 -8.35489 -6.13334 1.25045 1.40677 1.45143 1.55341 1.56949 1.72678 2.06064 2.21303 2.26592 2.96152 2.98730 3.23235 3.48913 3.71165 3.73071 3.80220 3.83424 3.84571 3.99196 4.08380 4.17918 4.21659 4.23810 4.31066 4.40893 4.46466 4.56707 4.62297 4.68526 4.70041 4.77371 4.81511 4.83294 4.85488 4.91660 5.04493 5.07691 5.09320 5.14411 5.29429 5.30680 5.38460 5.41506 5.54657 5.55696 6.19169 6.23672 6.60060 7.06082 7.12509 7.32632 8.73850 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016327 B = 0.002273 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.499509 B =12314.310047 C =13405.231600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.104 4.104 3 H 0.078 0.922 4 C 0.114 3.886 5 N -0.604 5.604 6 C 0.535 3.465 7 O -0.563 6.563 8 C -0.125 4.125 9 S -0.149 6.149 10 C -0.545 4.545 11 H 0.081 0.919 12 C 0.013 3.987 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.257 1.257 16 H -0.274 1.274 17 H -0.273 1.273 18 C 0.108 3.892 19 C -0.141 4.141 20 C 0.159 3.841 21 H 0.082 0.918 22 N -0.712 5.712 23 C 0.516 3.484 24 O -0.581 6.581 25 C -0.105 4.105 26 C -0.156 4.156 27 C -0.183 4.183 28 C -0.171 4.171 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.271 0.729 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.411 0.589 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.091 0.909 45 H 0.105 0.895 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.969 -12.742 -18.441 30.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 H 0.096 0.904 4 C -0.008 4.008 5 N -0.338 5.338 6 C 0.323 3.677 7 O -0.441 6.441 8 C -0.276 4.276 9 S 0.078 5.922 10 C -0.692 4.692 11 H 0.100 0.900 12 C -0.192 4.192 13 N -0.547 5.547 14 Si 0.820 3.180 15 H -0.181 1.181 16 H -0.200 1.200 17 H -0.199 1.199 18 C -0.014 4.014 19 C -0.181 4.181 20 C 0.054 3.946 21 H 0.100 0.900 22 N -0.365 5.365 23 C 0.305 3.695 24 O -0.461 6.461 25 C -0.144 4.144 26 C -0.175 4.175 27 C -0.220 4.220 28 C -0.207 4.207 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.080 0.920 37 H 0.105 0.895 38 H 0.108 0.892 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.248 0.752 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.109 0.891 45 H 0.123 0.877 46 H 0.106 0.894 47 H 0.113 0.887 48 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -20.495 -11.573 -17.578 29.376 hybrid contribution 1.739 -0.360 -0.715 1.914 sum -18.756 -11.933 -18.292 28.789 Atomic orbital electron populations 1.21713 0.92122 1.03194 1.02579 1.21701 0.97791 0.99808 0.93052 0.90378 1.21766 0.78369 1.01782 0.98888 1.48060 1.06892 1.60950 1.17901 1.20055 0.88392 0.76767 0.82462 1.90680 1.75446 1.45456 1.32535 1.23380 0.94694 1.05776 1.03796 1.85551 1.03744 1.80577 1.22324 1.23213 0.91414 1.47171 1.07438 0.90040 1.26117 1.04965 0.93949 0.94128 1.70186 1.35837 1.39643 1.09014 0.84919 0.76009 0.78239 0.78869 1.18092 1.19977 1.19853 1.21874 0.98992 0.97864 0.82720 1.22252 0.96136 1.01870 0.97807 1.20766 0.92987 0.82486 0.98335 0.90008 1.46040 1.67844 1.13198 1.09457 1.21062 0.76130 0.89306 0.83035 1.90691 1.51805 1.71282 1.32274 1.21268 1.04894 0.91183 0.97074 1.21996 1.00178 0.98267 0.97050 1.23119 0.93039 1.03868 1.01993 1.23079 1.02814 0.90783 1.04068 0.91867 0.91952 0.90960 0.89038 0.90485 0.87523 0.87822 0.91990 0.89542 0.89211 0.90888 0.90109 0.75156 0.86468 0.86476 0.89109 0.87650 0.89384 0.88686 0.87137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.59 9.05 71.98 0.65 -0.94 16 2 C -0.10 -1.60 2.67 -10.72 -0.03 -1.63 16 3 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 4 C 0.11 2.19 5.42 86.36 0.47 2.66 16 5 N -0.60 -14.89 2.97 -818.89 -2.43 -17.32 16 6 C 0.54 19.48 7.72 87.66 0.68 20.16 16 7 O -0.56 -25.47 15.28 -3.04 -0.05 -25.52 16 8 C -0.13 -4.96 4.50 71.23 0.32 -4.64 16 9 S -0.15 -8.25 20.57 -56.49 -1.16 -9.41 16 10 C -0.54 -30.98 9.50 67.95 0.65 -30.33 16 11 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 12 C 0.01 0.75 5.49 84.86 0.47 1.22 16 13 N -0.91 -55.71 13.22 21.65 0.29 -55.43 16 14 Si 1.00 43.51 29.55 68.60 2.03 45.54 16 15 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 16 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 17 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 18 C 0.11 2.03 6.08 86.36 0.53 2.56 16 19 C -0.14 -2.49 5.77 30.67 0.18 -2.31 16 20 C 0.16 2.46 2.21 45.02 0.10 2.56 16 21 H 0.08 1.51 7.57 -2.39 -0.02 1.49 16 22 N -0.71 -8.29 3.59 -442.42 -1.59 -9.88 16 23 C 0.52 7.84 7.79 87.66 0.68 8.53 16 24 O -0.58 -14.17 15.22 -3.03 -0.05 -14.22 16 25 C -0.10 -0.95 5.98 29.85 0.18 -0.77 16 26 C -0.16 -2.03 5.41 -10.79 -0.06 -2.09 16 27 C -0.18 -2.00 10.18 30.60 0.31 -1.69 16 28 C -0.17 -1.61 10.25 30.60 0.31 -1.30 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.71 16 31 H 0.07 0.61 7.53 -2.38 -0.02 0.60 16 32 H 0.09 1.20 6.64 -2.38 -0.02 1.19 16 33 H 0.08 1.90 7.01 -2.39 -0.02 1.89 16 34 H 0.11 3.81 7.94 -2.39 -0.02 3.79 16 35 H 0.10 3.78 7.69 -2.39 -0.02 3.76 16 36 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 37 H 0.09 1.76 5.93 -2.39 -0.01 1.75 16 38 H 0.09 1.33 7.74 -2.38 -0.02 1.31 16 39 H 0.07 1.40 8.14 -2.39 -0.02 1.39 16 40 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.41 2.96 6.73 -92.70 -0.62 2.33 16 42 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.12 0.54 7.88 -2.38 -0.02 0.52 16 44 H 0.09 1.69 7.31 -2.39 -0.02 1.68 16 45 H 0.11 0.87 8.03 -2.39 -0.02 0.85 16 46 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 48 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -79.63 397.17 2.80 -76.83 By element: Atomic # 1 Polarization: 17.09 SS G_CDS: 0.33 Total: 17.42 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: 5.43 Total: -8.02 kcal Atomic # 7 Polarization: -78.89 SS G_CDS: -3.74 Total: -82.63 kcal Atomic # 8 Polarization: -39.64 SS G_CDS: -0.09 Total: -39.73 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.25 SS G_CDS: -1.16 Total: -9.41 kcal Total: -79.63 2.80 -76.83 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073617063.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.754 kcal (2) G-P(sol) polarization free energy of solvation -79.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds