Wall clock time and date at job start Sat Apr 11 2020 06:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.50698 * 120.00442 * 2 1 4 4 C 1.32995 * 119.99872 * 179.97438 * 2 1 3 5 5 C 1.47108 * 119.99898 * 5.63927 * 4 2 1 6 6 O 1.21607 * 119.99944 * 354.74732 * 5 4 2 7 7 N 1.34777 * 119.99755 * 174.74705 * 5 4 2 8 8 C 1.46504 * 119.99757 * 179.97438 * 7 5 4 9 9 H 1.08998 * 109.45653 * 34.97432 * 8 7 5 10 10 C 1.53038 * 109.45773 * 275.00179 * 8 7 5 11 11 C 1.53198 * 109.31098 * 178.61679 * 10 8 7 12 12 N 1.46922 * 108.77675 * 54.63089 * 11 10 8 13 13 C 1.34770 * 120.63177 * 126.37291 * 12 11 10 14 14 O 1.21280 * 120.00183 * 179.97438 * 13 12 11 15 15 C 1.50698 * 119.99774 * 359.97438 * 13 12 11 16 16 S 1.81000 * 109.47140 * 180.02562 * 15 13 12 17 17 C 1.76206 * 100.00086 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99915 * 0.02562 * 17 16 15 19 19 C 1.38801 * 119.99774 * 180.02562 * 17 16 15 20 20 N 1.31630 * 120.00220 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99711 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47280 * 59.99777 * 21 19 17 23 23 H 1.48498 * 109.47106 * 179.97438 * 21 19 17 24 24 H 1.48501 * 109.46945 * 299.99790 * 21 19 17 25 25 C 1.46924 * 118.73961 * 306.64731 * 12 11 10 26 26 C 1.52757 * 109.01136 * 53.30812 * 25 12 11 27 27 H 1.09003 * 109.36120 * 65.49658 * 26 25 12 28 28 C 1.52998 * 109.59468 * 185.53719 * 26 25 12 29 29 H 1.08996 * 109.47245 * 238.27025 * 1 2 3 30 30 H 1.08998 * 109.46720 * 358.26662 * 1 2 3 31 31 H 1.08997 * 109.46859 * 118.26837 * 1 2 3 32 32 H 1.08995 * 109.47206 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.46968 * 299.99926 * 3 2 1 34 34 H 1.09004 * 109.47426 * 59.99495 * 3 2 1 35 35 H 1.07997 * 120.00129 * 185.63369 * 4 2 1 36 36 H 0.96995 * 120.00104 * 359.97438 * 7 5 4 37 37 H 1.08998 * 109.50052 * 58.66342 * 10 8 7 38 38 H 1.09003 * 109.52464 * 298.57798 * 10 8 7 39 39 H 1.09002 * 109.58133 * 294.84717 * 11 10 8 40 40 H 1.08989 * 109.70660 * 174.49518 * 11 10 8 41 41 H 1.08997 * 109.47779 * 60.00014 * 15 13 12 42 42 H 1.09007 * 109.47520 * 299.99961 * 15 13 12 43 43 H 0.97002 * 119.99632 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.59247 * 173.14569 * 25 12 11 45 45 H 1.09008 * 109.58882 * 293.56741 * 25 12 11 46 46 H 1.09003 * 109.47444 * 179.97438 * 28 26 25 47 47 H 1.08995 * 109.47278 * 299.98509 * 28 26 25 48 48 H 1.09006 * 109.46847 * 59.97931 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2606 1.3050 0.0000 4 6 2.1719 -1.1518 0.0005 5 6 1.4417 -2.4227 -0.1241 6 8 0.2257 -2.4271 -0.1314 7 7 2.1204 -3.5823 -0.2302 8 6 1.3932 -4.8480 -0.3537 9 1 0.4850 -4.6897 -0.9353 10 6 1.0233 -5.3616 1.0397 11 6 0.2332 -6.6672 0.9052 12 7 1.0180 -7.6143 0.1016 13 6 1.2891 -8.8497 0.5670 14 8 1.9376 -9.6225 -0.1062 15 6 0.7865 -9.2708 1.9238 16 16 1.3109 -10.9701 2.2607 17 6 0.6086 -11.1955 3.8610 18 1 0.0521 -10.3941 4.3242 19 6 0.7706 -12.4029 4.5261 20 7 1.4484 -13.3798 3.9613 21 14 0.0254 -12.6421 6.2223 22 1 -1.4475 -12.4700 6.1447 23 1 0.3386 -14.0085 6.7124 24 1 0.5925 -11.6381 7.1581 25 6 1.5068 -7.1869 -1.2164 26 6 2.2779 -5.8775 -1.0605 27 1 3.1749 -6.0548 -0.4671 28 6 2.6748 -5.3484 -2.4402 29 1 -0.3633 -0.5404 0.8740 30 1 -0.3633 1.0272 0.0311 31 1 -0.3633 -0.4867 -0.9051 32 1 3.3322 1.1058 0.0005 33 1 1.9973 1.8766 -0.8900 34 1 1.9973 1.8767 0.8900 35 1 3.2480 -1.1540 0.0923 36 1 3.0904 -3.5787 -0.2247 37 1 0.4126 -4.6178 1.5513 38 1 1.9318 -5.5437 1.6138 39 1 -0.7180 -6.4693 0.4111 40 1 0.0507 -7.0897 1.8931 41 1 -0.3019 -9.2159 1.9413 42 1 1.1960 -8.6069 2.6852 43 1 1.5613 -14.2237 4.4261 44 1 2.1665 -7.9512 -1.6270 45 1 0.6615 -7.0323 -1.8871 46 1 3.2245 -4.4140 -2.3267 47 1 3.3048 -6.0819 -2.9432 48 1 1.7775 -5.1723 -3.0336 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073685705.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:34 Heat of formation + Delta-G solvation = -91.625715 kcal Electronic energy + Delta-G solvation = -27150.970302 eV Core-core repulsion = 23330.954630 eV Total energy + Delta-G solvation = -3820.015671 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.59618 -40.65413 -38.81635 -36.46047 -35.70171 -34.58907 -34.09012 -32.26748 -31.02269 -28.97696 -28.59644 -27.79157 -27.30543 -25.76807 -23.58170 -22.10728 -21.68536 -20.65029 -19.67073 -19.38245 -18.21939 -17.92438 -17.06672 -16.91881 -16.87588 -16.66558 -16.01845 -15.87485 -15.48375 -15.11666 -15.02272 -14.95635 -14.64620 -14.50984 -14.31804 -14.28410 -13.70752 -13.50241 -13.31179 -13.19560 -13.17764 -13.17463 -12.97461 -12.87300 -12.72560 -12.63533 -12.48843 -12.38633 -12.15366 -11.98329 -11.74150 -11.50252 -11.13439 -10.92447 -10.60054 -10.29751 -10.23158 -9.80431 -9.73166 -8.67795 -8.34879 -6.13301 0.46194 1.24198 1.43359 1.44582 1.53296 1.54682 2.04991 2.26912 2.27864 2.36386 2.98991 3.22646 3.47388 3.68482 3.76042 3.83078 3.87172 3.96543 4.02751 4.19862 4.23767 4.30193 4.32981 4.42471 4.47359 4.60031 4.61928 4.66567 4.70212 4.71014 4.77347 4.82634 4.87919 4.94486 4.99292 5.04848 5.08395 5.18886 5.21989 5.31086 5.40997 5.50932 5.54046 5.59878 5.66335 6.18880 6.22643 6.66337 7.06101 7.10158 7.34692 8.74002 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017558 B = 0.002143 C = 0.001971 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.340227 B =13061.789636 C =14200.800562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.032 4.032 3 C -0.125 4.125 4 C -0.247 4.247 5 C 0.539 3.461 6 O -0.577 6.577 7 N -0.711 5.711 8 C 0.160 3.840 9 H 0.080 0.920 10 C -0.136 4.136 11 C 0.106 3.894 12 N -0.607 5.607 13 C 0.536 3.464 14 O -0.563 6.563 15 C -0.126 4.126 16 S -0.148 6.148 17 C -0.547 4.547 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.910 5.910 21 Si 0.998 3.002 22 H -0.263 1.263 23 H -0.278 1.278 24 H -0.262 1.262 25 C 0.117 3.883 26 C -0.101 4.101 27 H 0.078 0.922 28 C -0.138 4.138 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.151 0.849 36 H 0.412 0.588 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.073 0.927 47 H 0.064 0.936 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.743 31.633 -9.657 33.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.034 4.034 3 C -0.181 4.181 4 C -0.268 4.268 5 C 0.330 3.670 6 O -0.459 6.459 7 N -0.362 5.362 8 C 0.055 3.945 9 H 0.098 0.902 10 C -0.175 4.175 11 C -0.016 4.016 12 N -0.341 5.341 13 C 0.324 3.676 14 O -0.442 6.442 15 C -0.277 4.277 16 S 0.079 5.921 17 C -0.695 4.695 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.546 5.546 21 Si 0.819 3.181 22 H -0.187 1.187 23 H -0.203 1.203 24 H -0.186 1.186 25 C -0.006 4.006 26 C -0.121 4.121 27 H 0.096 0.904 28 C -0.196 4.196 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.168 0.832 36 H 0.248 0.752 37 H 0.098 0.902 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.098 0.902 45 H 0.100 0.900 46 H 0.092 0.908 47 H 0.083 0.917 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 1.917 30.315 -10.664 32.193 hybrid contribution -0.632 0.024 1.704 1.817 sum 1.286 30.338 -8.960 31.660 Atomic orbital electron populations 1.20950 0.91939 1.01660 1.02657 1.22858 0.96441 0.95822 0.88287 1.21078 1.00191 0.93029 1.03809 1.22537 1.01255 0.90873 1.12128 1.19022 0.87155 0.85153 0.75625 1.90774 1.15265 1.87884 1.51999 1.45840 1.10746 1.05204 1.74394 1.20792 0.95535 0.82758 0.95462 0.90170 1.22231 1.01114 0.96297 0.97902 1.21899 0.94434 0.88537 0.96769 1.48102 1.54185 1.12391 1.19377 1.20082 0.78841 0.81669 0.87058 1.90672 1.40917 1.52910 1.59656 1.23386 1.05025 1.01950 0.97317 1.85547 1.72616 1.10694 1.23254 1.23159 1.40048 1.03302 1.02989 0.89996 1.26123 0.95311 0.94367 1.03300 1.70176 1.39659 1.04800 1.40006 0.85017 0.78868 0.77712 0.76484 1.18717 1.20329 1.18632 1.21637 0.99222 0.96106 0.83605 1.21592 0.98453 0.93305 0.98741 0.90361 1.21719 1.02010 1.01665 0.94196 0.91875 0.91165 0.91652 0.90152 0.89411 0.89695 0.83182 0.75168 0.90192 0.91258 0.89558 0.88908 0.87595 0.87539 0.91973 0.90189 0.89955 0.90825 0.91741 0.92241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.75 8.34 71.24 0.59 -1.15 16 2 C -0.03 -0.38 6.11 -17.62 -0.11 -0.49 16 3 C -0.12 -0.68 10.04 71.24 0.72 0.04 16 4 C -0.25 -3.08 9.63 23.43 0.23 -2.85 16 5 C 0.54 9.60 7.69 86.57 0.67 10.26 16 6 O -0.58 -14.28 12.76 -4.05 -0.05 -14.33 16 7 N -0.71 -10.00 4.36 -446.00 -1.94 -11.94 16 8 C 0.16 2.71 1.88 45.02 0.08 2.79 16 9 H 0.08 1.60 7.57 -2.39 -0.02 1.58 16 10 C -0.14 -2.57 5.65 30.67 0.17 -2.39 16 11 C 0.11 2.29 6.34 86.37 0.55 2.84 16 12 N -0.61 -16.70 2.98 -819.76 -2.44 -19.14 16 13 C 0.54 20.51 7.72 87.66 0.68 21.18 16 14 O -0.56 -26.44 15.28 -3.03 -0.05 -26.48 16 15 C -0.13 -5.13 4.50 71.24 0.32 -4.81 16 16 S -0.15 -8.33 20.57 -56.49 -1.16 -9.49 16 17 C -0.55 -31.47 9.50 67.95 0.65 -30.82 16 18 H 0.08 4.37 7.80 -2.91 -0.02 4.35 16 19 C 0.01 0.79 5.49 84.86 0.47 1.26 16 20 N -0.91 -56.12 13.22 21.65 0.29 -55.83 16 21 Si 1.00 43.79 29.55 68.60 2.03 45.82 16 22 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.18 16 24 H -0.26 -10.88 7.11 99.48 0.71 -10.18 16 25 C 0.12 2.67 5.69 86.22 0.49 3.16 16 26 C -0.10 -1.69 2.44 -10.86 -0.03 -1.71 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 C -0.14 -1.77 9.03 71.98 0.65 -1.12 16 29 H 0.06 1.20 7.32 -2.39 -0.02 1.18 16 30 H 0.07 0.75 8.00 -2.39 -0.02 0.73 16 31 H 0.06 1.23 7.14 -2.39 -0.02 1.21 16 32 H 0.08 0.27 7.82 -2.39 -0.02 0.25 16 33 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 34 H 0.08 0.35 8.14 -2.38 -0.02 0.34 16 35 H 0.15 1.01 7.88 -2.91 -0.02 0.99 16 36 H 0.41 3.78 8.29 -92.71 -0.77 3.01 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 2.03 5.93 -2.39 -0.01 2.02 16 41 H 0.11 3.96 7.94 -2.40 -0.02 3.94 16 42 H 0.11 3.95 7.70 -2.39 -0.02 3.93 16 43 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 44 H 0.08 2.19 7.01 -2.39 -0.02 2.17 16 45 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 46 H 0.07 0.74 7.36 -2.39 -0.02 0.72 16 47 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 Total: -1.00 -79.20 399.45 2.97 -76.23 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.18 Total: 18.99 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 6.12 Total: -3.82 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -4.10 Total: -86.91 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -0.10 Total: -40.81 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: -8.33 SS G_CDS: -1.16 Total: -9.49 kcal Total: -79.20 2.97 -76.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073685705.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.400 kcal (2) G-P(sol) polarization free energy of solvation -79.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds