Wall clock time and date at job start Sat Apr 11 2020 06:02:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50699 * 119.99863 * 2 1 4 4 C 1.32989 * 120.00391 * 179.97438 * 2 1 3 5 5 C 1.47100 * 120.00343 * 185.66762 * 4 2 1 6 6 O 1.21619 * 120.00000 * 5.63411 * 5 4 2 7 7 N 1.34780 * 120.00284 * 185.63235 * 5 4 2 8 8 C 1.46497 * 120.00135 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.45979 * 325.02866 * 8 7 5 10 10 C 1.53036 * 109.46167 * 84.99981 * 8 7 5 11 11 C 1.53188 * 109.31406 * 181.38555 * 10 8 7 12 12 N 1.46927 * 108.77571 * 305.36691 * 11 10 8 13 13 C 1.34780 * 120.62869 * 233.62926 * 12 11 10 14 14 O 1.21284 * 119.99608 * 180.02562 * 13 12 11 15 15 C 1.50699 * 120.00341 * 0.02562 * 13 12 11 16 16 S 1.80999 * 109.47264 * 180.02562 * 15 13 12 17 17 C 1.76205 * 99.99891 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99874 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99677 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00560 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99748 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47101 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47040 * 120.00051 * 21 19 17 24 24 H 1.48501 * 109.47050 * 240.00139 * 21 19 17 25 25 C 1.46924 * 118.74050 * 53.60798 * 12 11 10 26 26 C 1.53040 * 109.46038 * 205.06880 * 8 7 5 27 27 H 1.08998 * 109.49941 * 298.56977 * 26 8 7 28 28 C 1.53009 * 109.49537 * 58.66234 * 26 8 7 29 29 H 1.09004 * 109.46958 * 90.00458 * 1 2 3 30 30 H 1.09006 * 109.47028 * 210.00181 * 1 2 3 31 31 H 1.08996 * 109.47346 * 330.00432 * 1 2 3 32 32 H 1.09006 * 109.47163 * 354.78959 * 3 2 1 33 33 H 1.08997 * 109.47743 * 114.79284 * 3 2 1 34 34 H 1.09010 * 109.47115 * 234.79612 * 3 2 1 35 35 H 1.07998 * 120.00040 * 5.67037 * 4 2 1 36 36 H 0.97003 * 119.99621 * 0.02562 * 7 5 4 37 37 H 1.08999 * 109.49745 * 301.33489 * 10 8 7 38 38 H 1.09005 * 109.49435 * 61.40226 * 10 8 7 39 39 H 1.09001 * 109.58903 * 65.15493 * 11 10 8 40 40 H 1.09004 * 109.58839 * 185.43526 * 11 10 8 41 41 H 1.09003 * 109.47001 * 300.00129 * 15 13 12 42 42 H 1.08998 * 109.47153 * 59.99939 * 15 13 12 43 43 H 0.97003 * 120.00708 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.58508 * 66.17620 * 25 12 11 45 45 H 1.08997 * 109.58653 * 186.46026 * 25 12 11 46 46 H 1.09000 * 109.47099 * 60.00401 * 28 26 8 47 47 H 1.08999 * 109.46967 * 179.97438 * 28 26 8 48 48 H 1.08993 * 109.47144 * 299.99904 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 3.6376 -1.1547 0.1263 6 8 4.2324 -0.1141 0.3325 7 7 4.3213 -2.3107 0.0131 8 6 5.7809 -2.3137 0.1390 9 1 6.1840 -1.3949 -0.2869 10 6 6.1650 -2.4017 1.6177 11 6 7.6910 -2.3697 1.7476 12 7 8.2591 -3.4365 0.9122 13 6 9.1088 -4.3412 1.4376 14 8 9.5714 -5.2168 0.7373 15 6 9.4841 -4.2649 2.8951 16 16 10.6319 -5.6065 3.2936 17 6 10.8958 -5.2849 5.0058 18 1 10.3988 -4.4525 5.4818 19 6 11.7416 -6.1020 5.7431 20 7 12.3469 -7.1168 5.1632 21 14 12.0208 -5.7614 7.5584 22 1 11.2301 -4.5725 7.9664 23 1 11.5905 -6.9386 8.3548 24 1 13.4635 -5.5027 7.7973 25 6 7.8830 -3.4986 -0.5068 26 6 6.3548 -3.5178 -0.6113 27 1 5.9715 -4.4379 -0.1702 28 6 5.9427 -3.4461 -2.0831 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.5557 2.1315 -0.0933 33 1 2.8153 1.4044 0.9329 34 1 2.9552 1.3236 -0.8398 35 1 1.6360 -2.0848 -0.0915 36 1 3.8470 -3.1406 -0.1517 37 1 5.7363 -1.5562 2.1558 38 1 5.7829 -3.3320 2.0381 39 1 8.0663 -1.4032 1.4113 40 1 7.9726 -2.5289 2.7886 41 1 9.9619 -3.3063 3.0975 42 1 8.5870 -4.3601 3.5067 43 1 12.9377 -7.6880 5.6785 44 1 8.2739 -2.6241 -1.0269 45 1 8.2935 -4.4037 -0.9543 46 1 6.3277 -2.5266 -2.5239 47 1 6.3520 -4.3036 -2.6172 48 1 4.8553 -3.4570 -2.1569 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073685708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:45 Heat of formation + Delta-G solvation = -69.288296 kcal Electronic energy + Delta-G solvation = -27147.346834 eV Core-core repulsion = 23328.299786 eV Total energy + Delta-G solvation = -3819.047048 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.63242 -39.59304 -37.70401 -35.79151 -34.72835 -33.21636 -32.42785 -31.29957 -29.54823 -28.46231 -28.04220 -26.54055 -25.50414 -24.74148 -22.65719 -21.36793 -20.82424 -19.40511 -18.75445 -17.67107 -17.23452 -16.86769 -16.04722 -15.77706 -15.45723 -15.12646 -14.80337 -14.74532 -14.51654 -14.30290 -14.04366 -13.93375 -13.82694 -13.43259 -13.18354 -12.88010 -12.82704 -12.64686 -12.62134 -12.31208 -12.18295 -12.10994 -11.94104 -11.87941 -11.62777 -11.26958 -11.19672 -11.06947 -11.00875 -10.75715 -10.66466 -9.89551 -9.79305 -9.55183 -9.37546 -9.13277 -9.07288 -8.54402 -8.21862 -6.49870 -6.21583 -3.92039 1.03058 2.88735 2.93933 3.03977 3.09796 3.21724 3.26504 3.31443 3.59769 4.20223 4.26895 4.38211 4.44289 4.55266 4.65024 4.81702 4.91427 4.92087 5.01924 5.04548 5.06622 5.13670 5.20711 5.23899 5.29740 5.38633 5.41401 5.43455 5.53483 5.57635 5.59122 5.63198 5.71450 5.74996 5.81062 5.88002 5.90019 5.93976 6.06499 6.11639 6.12640 6.16573 6.29371 6.62508 7.29642 7.54510 7.60309 8.03093 8.35652 8.55350 9.23915 10.85854 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017506 B = 0.002142 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.111908 B =13067.460878 C =14197.581247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.031 4.031 3 C -0.118 4.118 4 C -0.240 4.240 5 C 0.546 3.454 6 O -0.541 6.541 7 N -0.722 5.722 8 C 0.153 3.847 9 H 0.090 0.910 10 C -0.145 4.145 11 C 0.112 3.888 12 N -0.621 5.621 13 C 0.536 3.464 14 O -0.517 6.517 15 C -0.151 4.151 16 S -0.062 6.062 17 C -0.534 4.534 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.122 3.878 26 C -0.113 4.113 27 H 0.081 0.919 28 C -0.143 4.143 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.124 0.876 36 H 0.399 0.601 37 H 0.080 0.920 38 H 0.070 0.930 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.057 0.943 47 H 0.062 0.938 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.784 14.002 -13.149 30.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.032 4.032 3 C -0.174 4.174 4 C -0.261 4.261 5 C 0.336 3.664 6 O -0.421 6.421 7 N -0.372 5.372 8 C 0.048 3.952 9 H 0.108 0.892 10 C -0.184 4.184 11 C -0.012 4.012 12 N -0.358 5.358 13 C 0.324 3.676 14 O -0.391 6.391 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.682 4.682 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.002 4.002 26 C -0.133 4.133 27 H 0.099 0.901 28 C -0.201 4.201 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.071 0.929 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.142 0.858 36 H 0.233 0.767 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.117 0.883 46 H 0.076 0.924 47 H 0.081 0.919 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -22.519 13.280 -14.017 29.664 hybrid contribution -0.709 0.697 1.978 2.214 sum -23.228 13.977 -12.039 29.662 Atomic orbital electron populations 1.21035 0.91147 1.03396 1.02898 1.22589 0.95911 0.95527 0.89218 1.21057 0.99171 0.92759 1.04460 1.22362 0.93273 0.98948 1.11546 1.18551 0.87921 0.83391 0.76525 1.90783 1.70922 1.31426 1.48955 1.45986 1.07549 1.10030 1.73647 1.20971 0.79482 0.99358 0.95356 0.89176 1.22327 0.96135 1.03293 0.96653 1.21671 0.92328 0.90673 0.96570 1.48139 1.47211 1.30473 1.09931 1.20337 0.77441 0.80194 0.89599 1.90688 1.52415 1.34275 1.61764 1.23558 1.05224 1.07077 0.94285 1.85393 1.53988 1.33020 1.11091 1.22902 1.32992 1.17692 0.94643 0.90887 1.24992 0.94849 0.94491 0.99281 1.70025 1.28079 1.15700 1.36468 0.86121 0.78166 0.78340 0.82896 1.19606 1.20578 1.20559 1.21517 0.92566 1.03735 0.82341 1.21802 0.96546 0.98406 0.96572 0.90061 1.21750 1.01351 1.02386 0.94626 0.90374 0.91060 0.90815 0.92905 0.89382 0.90390 0.85776 0.76673 0.90158 0.91096 0.91196 0.88849 0.89219 0.89274 0.92246 0.91583 0.88338 0.92364 0.91934 0.92365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.54 9.97 36.00 0.36 -0.18 16 2 C -0.03 -0.21 6.11 -101.17 -0.62 -0.83 16 3 C -0.12 -0.93 8.33 36.01 0.30 -0.63 16 4 C -0.24 -1.76 9.62 -37.81 -0.36 -2.12 16 5 C 0.55 5.26 7.66 -12.66 -0.10 5.16 16 6 O -0.54 -6.84 12.86 5.26 0.07 -6.77 16 7 N -0.72 -5.79 4.36 -54.95 -0.24 -6.03 16 8 C 0.15 1.42 1.88 -67.89 -0.13 1.30 16 9 H 0.09 0.97 7.57 -51.93 -0.39 0.57 16 10 C -0.14 -1.48 5.65 -26.62 -0.15 -1.63 16 11 C 0.11 1.29 6.34 -3.71 -0.02 1.26 16 12 N -0.62 -8.80 2.97 -172.77 -0.51 -9.31 16 13 C 0.54 10.20 7.72 -10.98 -0.08 10.11 16 14 O -0.52 -11.76 15.27 5.55 0.08 -11.67 16 15 C -0.15 -3.08 4.50 36.01 0.16 -2.92 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.25 9.50 30.94 0.29 -14.95 16 18 H 0.07 1.98 7.80 -52.48 -0.41 1.57 16 19 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 20 N -0.87 -26.20 13.22 55.49 0.73 -25.47 16 21 Si 0.92 21.48 29.55 -169.99 -5.02 16.46 16 22 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 23 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 24 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 25 C 0.12 1.44 5.72 -3.71 -0.02 1.42 16 26 C -0.11 -1.03 2.46 -90.49 -0.22 -1.26 16 27 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 28 C -0.14 -1.06 9.03 37.16 0.34 -0.72 16 29 H 0.08 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 31 H 0.07 0.27 8.09 -51.93 -0.42 -0.15 16 32 H 0.05 0.31 7.98 -51.93 -0.41 -0.10 16 33 H 0.09 0.84 7.09 -51.93 -0.37 0.47 16 34 H 0.08 0.71 7.41 -51.92 -0.38 0.33 16 35 H 0.12 0.63 8.06 -52.49 -0.42 0.20 16 36 H 0.40 2.35 8.29 -40.82 -0.34 2.02 16 37 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.09 1.10 5.95 -51.93 -0.31 0.80 16 41 H 0.09 1.71 7.94 -51.91 -0.41 1.30 16 42 H 0.09 1.69 7.70 -51.92 -0.40 1.29 16 43 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 44 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 45 H 0.10 1.33 7.00 -51.93 -0.36 0.97 16 46 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 47 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.06 0.37 7.36 -51.93 -0.38 -0.01 16 LS Contribution 399.86 15.07 6.03 6.03 Total: -1.00 -35.25 399.86 -9.38 -44.64 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.95 Total: 0.01 kcal Atomic # 6 Polarization: -3.65 SS G_CDS: -0.35 Total: -4.00 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: -0.02 Total: -40.80 kcal Atomic # 8 Polarization: -18.59 SS G_CDS: 0.15 Total: -18.44 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -35.25 -9.38 -44.64 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073685708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.651 kcal (2) G-P(sol) polarization free energy of solvation -35.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds