Wall clock time and date at job start Sat Apr 11 2020 06:02:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.50699 * 119.99863 * 2 1 4 4 C 1.32989 * 120.00391 * 179.97438 * 2 1 3 5 5 C 1.47100 * 120.00343 * 185.66762 * 4 2 1 6 6 O 1.21619 * 120.00000 * 5.63411 * 5 4 2 7 7 N 1.34780 * 120.00284 * 185.63235 * 5 4 2 8 8 C 1.46497 * 120.00135 * 180.02562 * 7 5 4 9 9 H 1.09000 * 109.45979 * 325.02866 * 8 7 5 10 10 C 1.53036 * 109.46167 * 84.99981 * 8 7 5 11 11 C 1.53188 * 109.31406 * 181.38555 * 10 8 7 12 12 N 1.46927 * 108.77571 * 305.36691 * 11 10 8 13 13 C 1.34780 * 120.62869 * 233.62926 * 12 11 10 14 14 O 1.21284 * 119.99608 * 180.02562 * 13 12 11 15 15 C 1.50699 * 120.00341 * 0.02562 * 13 12 11 16 16 S 1.80999 * 109.47264 * 180.02562 * 15 13 12 17 17 C 1.76205 * 99.99891 * 179.97438 * 16 15 13 18 18 H 1.08003 * 119.99874 * 0.02562 * 17 16 15 19 19 C 1.38796 * 119.99677 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00560 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99748 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47101 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.47040 * 120.00051 * 21 19 17 24 24 H 1.48501 * 109.47050 * 240.00139 * 21 19 17 25 25 C 1.46924 * 118.74050 * 53.60798 * 12 11 10 26 26 C 1.53040 * 109.46038 * 205.06880 * 8 7 5 27 27 H 1.08998 * 109.49941 * 298.56977 * 26 8 7 28 28 C 1.53009 * 109.49537 * 58.66234 * 26 8 7 29 29 H 1.09004 * 109.46958 * 90.00458 * 1 2 3 30 30 H 1.09006 * 109.47028 * 210.00181 * 1 2 3 31 31 H 1.08996 * 109.47346 * 330.00432 * 1 2 3 32 32 H 1.09006 * 109.47163 * 354.78959 * 3 2 1 33 33 H 1.08997 * 109.47743 * 114.79284 * 3 2 1 34 34 H 1.09010 * 109.47115 * 234.79612 * 3 2 1 35 35 H 1.07998 * 120.00040 * 5.67037 * 4 2 1 36 36 H 0.97003 * 119.99621 * 0.02562 * 7 5 4 37 37 H 1.08999 * 109.49745 * 301.33489 * 10 8 7 38 38 H 1.09005 * 109.49435 * 61.40226 * 10 8 7 39 39 H 1.09001 * 109.58903 * 65.15493 * 11 10 8 40 40 H 1.09004 * 109.58839 * 185.43526 * 11 10 8 41 41 H 1.09003 * 109.47001 * 300.00129 * 15 13 12 42 42 H 1.08998 * 109.47153 * 59.99939 * 15 13 12 43 43 H 0.97003 * 120.00708 * 180.02562 * 20 19 17 44 44 H 1.08999 * 109.58508 * 66.17620 * 25 12 11 45 45 H 1.08997 * 109.58653 * 186.46026 * 25 12 11 46 46 H 1.09000 * 109.47099 * 60.00401 * 28 26 8 47 47 H 1.08999 * 109.46967 * 179.97438 * 28 26 8 48 48 H 1.08993 * 109.47144 * 299.99904 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2604 1.3051 0.0000 4 6 2.1720 -1.1517 0.0005 5 6 3.6376 -1.1547 0.1263 6 8 4.2324 -0.1141 0.3325 7 7 4.3213 -2.3107 0.0131 8 6 5.7809 -2.3137 0.1390 9 1 6.1840 -1.3949 -0.2869 10 6 6.1650 -2.4017 1.6177 11 6 7.6910 -2.3697 1.7476 12 7 8.2591 -3.4365 0.9122 13 6 9.1088 -4.3412 1.4376 14 8 9.5714 -5.2168 0.7373 15 6 9.4841 -4.2649 2.8951 16 16 10.6319 -5.6065 3.2936 17 6 10.8958 -5.2849 5.0058 18 1 10.3988 -4.4525 5.4818 19 6 11.7416 -6.1020 5.7431 20 7 12.3469 -7.1168 5.1632 21 14 12.0208 -5.7614 7.5584 22 1 11.2301 -4.5725 7.9664 23 1 11.5905 -6.9386 8.3548 24 1 13.4635 -5.5027 7.7973 25 6 7.8830 -3.4986 -0.5068 26 6 6.3548 -3.5178 -0.6113 27 1 5.9715 -4.4379 -0.1702 28 6 5.9427 -3.4461 -2.0831 29 1 -0.3633 -0.0001 -1.0277 30 1 -0.3633 -0.8900 0.5139 31 1 -0.3634 0.8900 0.5137 32 1 1.5557 2.1315 -0.0933 33 1 2.8153 1.4044 0.9329 34 1 2.9552 1.3236 -0.8398 35 1 1.6360 -2.0848 -0.0915 36 1 3.8470 -3.1406 -0.1517 37 1 5.7363 -1.5562 2.1558 38 1 5.7829 -3.3320 2.0381 39 1 8.0663 -1.4032 1.4113 40 1 7.9726 -2.5289 2.7886 41 1 9.9619 -3.3063 3.0975 42 1 8.5870 -4.3601 3.5067 43 1 12.9377 -7.6880 5.6785 44 1 8.2739 -2.6241 -1.0269 45 1 8.2935 -4.4037 -0.9543 46 1 6.3277 -2.5266 -2.5239 47 1 6.3520 -4.3036 -2.6172 48 1 4.8553 -3.4570 -2.1569 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073685708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:44 Heat of formation + Delta-G solvation = -91.815439 kcal Electronic energy + Delta-G solvation = -27148.323684 eV Core-core repulsion = 23328.299786 eV Total energy + Delta-G solvation = -3820.023898 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.58737 -40.65087 -38.80651 -36.46044 -35.70138 -34.59412 -34.07102 -32.26747 -31.02363 -28.98564 -28.58923 -27.79660 -27.30264 -25.76733 -23.58091 -22.11473 -21.68255 -20.65099 -19.66780 -19.38031 -18.21753 -17.91414 -17.06799 -16.90798 -16.87833 -16.66604 -16.03599 -15.87513 -15.46012 -15.11648 -15.01324 -14.98234 -14.64251 -14.51469 -14.33266 -14.27973 -13.70521 -13.50376 -13.35379 -13.24091 -13.16665 -13.13526 -12.97073 -12.91911 -12.71561 -12.62774 -12.47125 -12.36816 -12.15122 -11.98624 -11.71102 -11.50413 -11.16676 -10.92527 -10.63470 -10.28404 -10.19747 -9.82433 -9.71790 -8.67960 -8.35574 -6.13731 0.45555 1.24283 1.40627 1.44601 1.53306 1.56475 2.05035 2.26204 2.27810 2.36223 2.98537 3.22443 3.47420 3.68569 3.75887 3.82854 3.86898 3.96556 4.02880 4.19794 4.23694 4.29297 4.32620 4.42316 4.47178 4.60943 4.61815 4.66472 4.69879 4.71605 4.77530 4.82964 4.88051 4.93288 4.99387 5.04985 5.08837 5.18653 5.21769 5.31124 5.41312 5.50931 5.53925 5.59308 5.65921 6.18996 6.22659 6.66165 7.05788 7.10164 7.34628 8.73848 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017506 B = 0.002142 C = 0.001972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.111908 B =13067.460878 C =14197.581247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.031 4.031 3 C -0.117 4.117 4 C -0.249 4.249 5 C 0.540 3.460 6 O -0.577 6.577 7 N -0.711 5.711 8 C 0.160 3.840 9 H 0.080 0.920 10 C -0.136 4.136 11 C 0.106 3.894 12 N -0.607 5.607 13 C 0.536 3.464 14 O -0.563 6.563 15 C -0.126 4.126 16 S -0.149 6.149 17 C -0.545 4.545 18 H 0.082 0.918 19 C 0.013 3.987 20 N -0.910 5.910 21 Si 0.999 3.001 22 H -0.257 1.257 23 H -0.273 1.273 24 H -0.274 1.274 25 C 0.117 3.883 26 C -0.101 4.101 27 H 0.078 0.922 28 C -0.138 4.138 29 H 0.091 0.909 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.061 0.939 35 H 0.151 0.849 36 H 0.412 0.588 37 H 0.079 0.921 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.106 0.894 42 H 0.106 0.894 43 H 0.271 0.729 44 H 0.083 0.917 45 H 0.080 0.920 46 H 0.059 0.941 47 H 0.063 0.937 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.371 15.458 -12.726 33.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.033 4.033 3 C -0.173 4.173 4 C -0.270 4.270 5 C 0.331 3.669 6 O -0.460 6.460 7 N -0.362 5.362 8 C 0.054 3.946 9 H 0.098 0.902 10 C -0.176 4.176 11 C -0.016 4.016 12 N -0.341 5.341 13 C 0.323 3.677 14 O -0.442 6.442 15 C -0.277 4.277 16 S 0.078 5.922 17 C -0.693 4.693 18 H 0.100 0.900 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.820 3.180 22 H -0.181 1.181 23 H -0.198 1.198 24 H -0.199 1.199 25 C -0.006 4.006 26 C -0.120 4.120 27 H 0.097 0.903 28 C -0.196 4.196 29 H 0.109 0.891 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.168 0.832 36 H 0.248 0.752 37 H 0.098 0.902 38 H 0.088 0.912 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.124 0.876 42 H 0.125 0.875 43 H 0.080 0.920 44 H 0.101 0.899 45 H 0.098 0.902 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -25.161 14.756 -13.617 32.190 hybrid contribution 0.014 0.358 1.747 1.784 sum -25.147 15.115 -11.869 31.650 Atomic orbital electron populations 1.21079 0.88865 1.04272 1.03947 1.22852 0.97474 0.94763 0.88170 1.20986 0.99238 0.94431 1.02660 1.22490 0.91879 1.00323 1.12265 1.19012 0.88978 0.83036 0.75851 1.90774 1.71790 1.32689 1.50701 1.45852 1.06890 1.10403 1.73030 1.20795 0.80390 0.98804 0.94578 0.90170 1.22234 0.94853 1.03130 0.97344 1.21893 0.93279 0.90311 0.96154 1.48106 1.45353 1.29433 1.11171 1.20086 0.78145 0.80647 0.88775 1.90673 1.54597 1.36458 1.62427 1.23385 1.03924 1.04473 0.95886 1.85551 1.57013 1.37515 1.12073 1.23222 1.33297 1.18071 0.94718 0.90003 1.26123 0.94278 0.94016 1.04731 1.70183 1.28912 1.16917 1.38675 0.84910 0.78324 0.78720 0.76020 1.18090 1.19845 1.19915 1.21729 0.94583 1.03605 0.80650 1.21666 0.94252 0.98158 0.97965 0.90336 1.21721 1.02333 1.02555 0.93002 0.89061 0.90034 0.90130 0.91072 0.91472 0.92062 0.83179 0.75167 0.90211 0.91250 0.89558 0.88910 0.87601 0.87539 0.91970 0.89930 0.90174 0.92239 0.91747 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.69 9.97 71.23 0.71 0.02 16 2 C -0.03 -0.36 6.11 -17.62 -0.11 -0.47 16 3 C -0.12 -1.75 8.33 71.24 0.59 -1.16 16 4 C -0.25 -3.10 9.62 23.43 0.23 -2.87 16 5 C 0.54 9.62 7.66 86.57 0.66 10.29 16 6 O -0.58 -14.32 12.86 -4.09 -0.05 -14.37 16 7 N -0.71 -10.00 4.36 -446.02 -1.94 -11.95 16 8 C 0.16 2.71 1.88 45.02 0.08 2.79 16 9 H 0.08 1.60 7.57 -2.39 -0.02 1.58 16 10 C -0.14 -2.57 5.65 30.67 0.17 -2.40 16 11 C 0.11 2.29 6.34 86.36 0.55 2.84 16 12 N -0.61 -16.69 2.97 -818.90 -2.43 -19.12 16 13 C 0.54 20.49 7.72 87.66 0.68 21.17 16 14 O -0.56 -26.42 15.27 -3.04 -0.05 -26.47 16 15 C -0.13 -5.13 4.50 71.24 0.32 -4.81 16 16 S -0.15 -8.35 20.57 -56.49 -1.16 -9.51 16 17 C -0.55 -31.37 9.50 67.95 0.65 -30.72 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.76 5.49 84.86 0.47 1.23 16 20 N -0.91 -56.12 13.22 21.65 0.29 -55.84 16 21 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 22 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 23 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 24 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 25 C 0.12 2.67 5.72 86.36 0.49 3.16 16 26 C -0.10 -1.68 2.46 -10.71 -0.03 -1.71 16 27 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 28 C -0.14 -1.77 9.03 71.99 0.65 -1.12 16 29 H 0.09 0.31 8.14 -2.38 -0.02 0.29 16 30 H 0.08 0.32 8.07 -2.38 -0.02 0.30 16 31 H 0.08 0.36 8.09 -2.39 -0.02 0.34 16 32 H 0.07 0.75 7.98 -2.38 -0.02 0.73 16 33 H 0.07 1.30 7.09 -2.39 -0.02 1.28 16 34 H 0.06 1.12 7.41 -2.38 -0.02 1.10 16 35 H 0.15 1.02 8.06 -2.91 -0.02 0.99 16 36 H 0.41 3.78 8.29 -92.71 -0.77 3.01 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 39 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.09 2.03 5.95 -2.39 -0.01 2.02 16 41 H 0.11 3.96 7.94 -2.39 -0.02 3.94 16 42 H 0.11 3.95 7.70 -2.40 -0.02 3.93 16 43 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 44 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 45 H 0.08 2.19 7.00 -2.39 -0.02 2.17 16 46 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 47 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 0.74 7.36 -2.39 -0.02 0.72 16 Total: -1.00 -79.30 399.86 2.97 -76.33 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: 0.18 Total: 18.80 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 6.12 Total: -3.76 kcal Atomic # 7 Polarization: -82.82 SS G_CDS: -4.09 Total: -86.91 kcal Atomic # 8 Polarization: -40.74 SS G_CDS: -0.10 Total: -40.84 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -8.35 SS G_CDS: -1.16 Total: -9.51 kcal Total: -79.30 2.97 -76.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073685708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.484 kcal (2) G-P(sol) polarization free energy of solvation -79.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds