Wall clock time and date at job start Sat Apr 11 2020 06:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00163 * 2 1 4 4 C 1.52997 * 109.47058 * 125.00169 * 3 2 1 5 5 C 1.50700 * 109.47382 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99658 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00452 * 179.97438 * 5 4 3 8 8 C 1.47207 * 120.81153 * 0.14103 * 7 5 4 9 9 C 1.53195 * 108.85456 * 126.34215 * 8 7 5 10 10 C 1.53038 * 109.31078 * 54.64814 * 9 8 7 11 11 H 1.09004 * 109.44845 * 178.62253 * 10 9 8 12 12 N 1.46503 * 109.45914 * 58.65985 * 10 9 8 13 13 C 1.34772 * 120.00083 * 84.93113 * 12 10 9 14 14 O 1.21285 * 120.00384 * 359.97438 * 13 12 10 15 15 C 1.50708 * 119.99986 * 180.02562 * 13 12 10 16 16 S 1.81003 * 109.47115 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99826 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00173 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00033 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00201 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99929 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47325 * 89.99657 * 21 19 17 23 23 H 1.48502 * 109.47399 * 209.99839 * 21 19 17 24 24 H 1.48506 * 109.46985 * 329.99967 * 21 19 17 25 25 C 1.53035 * 109.54175 * 298.63655 * 10 9 8 26 26 H 1.09003 * 109.49576 * 301.41349 * 25 10 9 27 27 C 1.52998 * 109.52461 * 181.33479 * 25 10 9 28 28 C 1.46926 * 120.63302 * 180.02562 * 7 5 4 29 29 H 1.07995 * 119.99731 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.99720 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00295 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47193 * 4.99884 * 3 2 1 33 33 H 1.09004 * 109.47012 * 244.99602 * 3 2 1 34 34 H 1.08998 * 109.47350 * 59.99812 * 4 3 2 35 35 H 1.09003 * 109.47457 * 299.99824 * 4 3 2 36 36 H 1.08996 * 109.53610 * 6.53712 * 8 7 5 37 37 H 1.08997 * 109.56315 * 246.16158 * 8 7 5 38 38 H 1.09002 * 109.49713 * 294.70061 * 9 8 7 39 39 H 1.08996 * 109.49824 * 174.60179 * 9 8 7 40 40 H 0.97005 * 119.99845 * 264.92864 * 12 10 9 41 41 H 1.08998 * 109.46525 * 299.99263 * 15 13 12 42 42 H 1.08998 * 109.47067 * 59.99309 * 15 13 12 43 43 H 0.97003 * 120.00347 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.47184 * 300.14039 * 27 25 10 45 45 H 1.08995 * 109.47343 * 60.14329 * 27 25 10 46 46 H 1.09003 * 109.47346 * 180.14608 * 27 25 10 47 47 H 1.09002 * 109.58861 * 113.81616 * 28 7 5 48 48 H 1.08996 * 109.58519 * 353.53507 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7891 2.6378 1.1813 6 8 3.5705 3.4643 0.3209 7 7 4.7056 2.8868 2.1376 8 6 4.9864 1.8957 3.1891 9 6 6.4924 1.6158 3.2161 10 6 7.2496 2.9357 3.3797 11 1 8.3204 2.7367 3.4238 12 7 6.8238 3.5923 4.6182 13 6 7.4032 3.2623 5.7895 14 8 8.2767 2.4214 5.8183 15 6 6.9648 3.9373 7.0636 16 16 7.9224 3.2832 8.4533 17 6 7.2249 4.2193 9.7730 18 1 6.4431 4.9368 9.5719 19 6 7.6794 4.0340 11.0713 20 7 7.1580 4.7329 12.0573 21 14 9.0312 2.7926 11.4193 22 1 10.3541 3.4592 11.3159 23 1 8.8591 2.2441 12.7886 24 1 8.9551 1.6876 10.4302 25 6 6.9493 3.8491 2.1891 26 1 7.2432 3.3509 1.2652 27 6 7.7324 5.1551 2.3364 28 6 5.4483 4.1545 2.1508 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1317 0.0895 33 1 2.6214 1.4026 -0.9314 34 1 3.7400 0.5065 1.0920 35 1 2.4773 1.2356 2.1130 36 1 4.4472 0.9733 2.9740 37 1 4.6706 2.2892 4.1553 38 1 6.7905 1.1387 2.2825 39 1 6.7250 0.9568 4.0525 40 1 6.1250 4.2646 4.5953 41 1 7.1307 5.0115 6.9812 42 1 5.9050 3.7451 7.2306 43 1 7.4759 4.6037 12.9646 44 1 7.4391 5.6524 3.2609 45 1 8.8001 4.9375 2.3638 46 1 7.5160 5.8061 1.4893 47 1 5.1700 4.7319 3.0325 48 1 5.2141 4.7246 1.2518 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073743557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:53 Heat of formation + Delta-G solvation = -67.330962 kcal Electronic energy + Delta-G solvation = -27326.813759 eV Core-core repulsion = 23507.851587 eV Total energy + Delta-G solvation = -3818.962172 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.95940 -39.52688 -37.79172 -35.75215 -34.71963 -33.13796 -32.46927 -31.62012 -31.10704 -29.08538 -27.24013 -25.88850 -25.58849 -24.05290 -22.78372 -21.09172 -20.23841 -20.07820 -18.94539 -18.00614 -17.42084 -16.57347 -16.42001 -16.27929 -15.91769 -15.43171 -15.16291 -14.97808 -14.64609 -14.31049 -14.22502 -14.14807 -13.66341 -13.57315 -13.40513 -13.11764 -12.98188 -12.82418 -12.58195 -12.30068 -12.26811 -12.04953 -11.86644 -11.48207 -11.41995 -11.32808 -11.29778 -11.24122 -11.03815 -10.85090 -10.59851 -10.11361 -9.88911 -9.71426 -9.57201 -9.13642 -9.03065 -8.90117 -8.54057 -6.95456 -6.31836 -4.03916 1.86711 2.31267 2.62669 2.72576 2.90776 3.26763 3.31227 3.47151 3.61493 4.06226 4.28692 4.29995 4.41964 4.49574 4.52107 4.66603 4.69078 4.74527 4.78668 4.84312 4.90148 4.99994 5.06757 5.07255 5.15360 5.24161 5.29365 5.39677 5.42932 5.43942 5.52810 5.57452 5.66391 5.70882 5.71932 5.75113 5.80752 5.83132 5.94947 5.96631 6.17306 6.24095 6.37433 6.49893 7.03585 7.53509 7.84498 7.91092 8.38691 8.42987 9.14202 10.77360 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.002276 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.689681 B =12300.491855 C =13200.825964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.157 4.157 3 C -0.079 4.079 4 C -0.136 4.136 5 C 0.516 3.484 6 O -0.544 6.544 7 N -0.613 5.613 8 C 0.107 3.893 9 C -0.147 4.147 10 C 0.152 3.848 11 H 0.093 0.907 12 N -0.731 5.731 13 C 0.533 3.467 14 O -0.518 6.518 15 C -0.125 4.125 16 S -0.140 6.140 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.111 4.111 26 H 0.087 0.913 27 C -0.146 4.146 28 C 0.113 3.887 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.075 0.925 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.397 0.603 41 H 0.096 0.904 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.067 0.933 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.980 -6.244 -24.955 26.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.175 4.175 3 C -0.117 4.117 4 C -0.176 4.176 5 C 0.305 3.695 6 O -0.421 6.421 7 N -0.346 5.346 8 C -0.016 4.016 9 C -0.187 4.187 10 C 0.047 3.953 11 H 0.111 0.889 12 N -0.386 5.386 13 C 0.319 3.681 14 O -0.392 6.392 15 C -0.276 4.276 16 S 0.086 5.914 17 C -0.670 4.670 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.516 5.516 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.131 4.131 26 H 0.106 0.894 27 C -0.204 4.204 28 C -0.010 4.010 29 H 0.116 0.884 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.113 0.887 35 H 0.113 0.887 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.106 0.894 40 H 0.232 0.768 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.652 -7.163 -25.160 26.992 hybrid contribution -0.782 0.828 0.583 1.280 sum -7.435 -6.334 -24.577 26.446 Atomic orbital electron populations 1.23901 0.95996 1.01967 1.00938 1.22965 0.96112 0.98313 1.00088 1.20509 0.97772 0.95494 0.97883 1.21665 0.98992 0.95603 1.01337 1.20730 0.79351 0.89012 0.80401 1.90694 1.65833 1.48414 1.37203 1.48235 1.39526 1.18432 1.28424 1.21838 0.96612 0.92142 0.90995 1.22322 0.94526 0.98327 1.03482 1.20865 1.00129 0.91195 0.83130 0.88875 1.46111 1.41971 1.44003 1.06501 1.20272 0.81298 0.82224 0.84335 1.90700 1.30184 1.32132 1.86216 1.23287 1.04853 1.03672 0.95768 1.84780 1.52068 1.55566 0.99014 1.22311 1.25781 1.26389 0.92473 0.89413 1.24720 0.96206 0.95475 0.94954 1.69935 1.41727 1.39710 1.00251 0.86731 0.82495 0.83161 0.79421 1.19219 1.19950 1.15941 1.21777 0.95203 0.97458 0.98629 0.89439 1.21762 1.00331 0.95991 1.02299 1.21661 0.90156 0.85638 1.03512 0.88444 0.88505 0.87287 0.90735 0.90265 0.88679 0.88652 0.89483 0.90655 0.90632 0.89399 0.76803 0.88592 0.88582 0.91922 0.91981 0.91857 0.92181 0.91482 0.88558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.17 14.32 29.02 0.42 -0.75 16 2 C -0.16 -0.98 9.52 -36.02 -0.34 -1.32 16 3 C -0.08 -0.58 4.95 -27.88 -0.14 -0.71 16 4 C -0.14 -0.91 4.04 -27.88 -0.11 -1.02 16 5 C 0.52 4.94 7.70 -10.99 -0.08 4.85 16 6 O -0.54 -7.10 15.39 5.55 0.09 -7.01 16 7 N -0.61 -5.12 2.98 -172.52 -0.51 -5.64 16 8 C 0.11 0.79 6.09 -3.56 -0.02 0.77 16 9 C -0.15 -1.25 5.77 -26.61 -0.15 -1.41 16 10 C 0.15 1.46 2.21 -67.89 -0.15 1.31 16 11 H 0.09 1.08 7.58 -51.93 -0.39 0.68 16 12 N -0.73 -8.03 3.60 -53.76 -0.19 -8.22 16 13 C 0.53 8.51 7.81 -10.98 -0.09 8.42 16 14 O -0.52 -10.20 15.53 5.55 0.09 -10.11 16 15 C -0.13 -2.27 6.16 36.01 0.22 -2.05 16 16 S -0.14 -3.44 18.55 -107.50 -1.99 -5.43 16 17 C -0.52 -14.73 10.04 30.94 0.31 -14.42 16 18 H 0.09 2.59 8.03 -52.49 -0.42 2.16 16 19 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 20 N -0.88 -26.22 13.97 55.49 0.78 -25.45 16 21 Si 0.86 21.43 27.74 -169.99 -4.71 16.71 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 24 H -0.24 -5.85 6.74 56.52 0.38 -5.47 16 25 C -0.11 -0.86 2.67 -90.48 -0.24 -1.11 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 27 C -0.15 -1.12 9.06 37.16 0.34 -0.78 16 28 C 0.11 0.93 5.41 -3.69 -0.02 0.91 16 29 H 0.10 0.49 8.06 -52.49 -0.42 0.07 16 30 H 0.10 0.58 7.84 -52.48 -0.41 0.17 16 31 H 0.11 0.56 8.06 -52.49 -0.42 0.14 16 32 H 0.07 0.62 7.75 -51.93 -0.40 0.22 16 33 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.09 0.48 7.70 -51.93 -0.40 0.08 16 35 H 0.10 0.55 7.95 -51.93 -0.41 0.13 16 36 H 0.09 0.49 5.97 -51.93 -0.31 0.18 16 37 H 0.08 0.61 7.74 -51.93 -0.40 0.21 16 38 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.40 3.60 6.73 -40.82 -0.27 3.32 16 41 H 0.10 1.64 8.14 -51.92 -0.42 1.22 16 42 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 43 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 44 H 0.06 0.50 7.53 -51.93 -0.39 0.11 16 45 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 47 H 0.07 0.51 6.64 -51.93 -0.34 0.17 16 48 H 0.10 0.91 7.00 -51.93 -0.36 0.55 16 LS Contribution 397.94 15.07 6.00 6.00 Total: -1.00 -34.22 397.94 -8.54 -42.77 By element: Atomic # 1 Polarization: 8.95 SS G_CDS: -7.91 Total: 1.04 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -0.16 Total: -4.66 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.07 Total: -39.30 kcal Atomic # 8 Polarization: -17.30 SS G_CDS: 0.17 Total: -17.13 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.71 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.43 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.22 -8.54 -42.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073743557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.563 kcal (2) G-P(sol) polarization free energy of solvation -34.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds