Wall clock time and date at job start Sat Apr 11 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50704 * 120.00163 * 2 1 4 4 C 1.52997 * 109.47058 * 125.00169 * 3 2 1 5 5 C 1.50700 * 109.47382 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99658 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00452 * 179.97438 * 5 4 3 8 8 C 1.47207 * 120.81153 * 0.14103 * 7 5 4 9 9 C 1.53195 * 108.85456 * 126.34215 * 8 7 5 10 10 C 1.53038 * 109.31078 * 54.64814 * 9 8 7 11 11 H 1.09004 * 109.44845 * 178.62253 * 10 9 8 12 12 N 1.46503 * 109.45914 * 58.65985 * 10 9 8 13 13 C 1.34772 * 120.00083 * 84.93113 * 12 10 9 14 14 O 1.21285 * 120.00384 * 359.97438 * 13 12 10 15 15 C 1.50708 * 119.99986 * 180.02562 * 13 12 10 16 16 S 1.81003 * 109.47115 * 179.97438 * 15 13 12 17 17 C 1.76198 * 99.99826 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00173 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00033 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00201 * 180.02562 * 19 17 16 21 21 Si 1.86799 * 119.99929 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47325 * 89.99657 * 21 19 17 23 23 H 1.48502 * 109.47399 * 209.99839 * 21 19 17 24 24 H 1.48506 * 109.46985 * 329.99967 * 21 19 17 25 25 C 1.53035 * 109.54175 * 298.63655 * 10 9 8 26 26 H 1.09003 * 109.49576 * 301.41349 * 25 10 9 27 27 C 1.52998 * 109.52461 * 181.33479 * 25 10 9 28 28 C 1.46926 * 120.63302 * 180.02562 * 7 5 4 29 29 H 1.07995 * 119.99731 * 179.97438 * 1 2 3 30 30 H 1.08007 * 119.99720 * 359.97438 * 1 2 3 31 31 H 1.07999 * 120.00295 * 180.02562 * 2 1 3 32 32 H 1.08998 * 109.47193 * 4.99884 * 3 2 1 33 33 H 1.09004 * 109.47012 * 244.99602 * 3 2 1 34 34 H 1.08998 * 109.47350 * 59.99812 * 4 3 2 35 35 H 1.09003 * 109.47457 * 299.99824 * 4 3 2 36 36 H 1.08996 * 109.53610 * 6.53712 * 8 7 5 37 37 H 1.08997 * 109.56315 * 246.16158 * 8 7 5 38 38 H 1.09002 * 109.49713 * 294.70061 * 9 8 7 39 39 H 1.08996 * 109.49824 * 174.60179 * 9 8 7 40 40 H 0.97005 * 119.99845 * 264.92864 * 12 10 9 41 41 H 1.08998 * 109.46525 * 299.99263 * 15 13 12 42 42 H 1.08998 * 109.47067 * 59.99309 * 15 13 12 43 43 H 0.97003 * 120.00347 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.47184 * 300.14039 * 27 25 10 45 45 H 1.08995 * 109.47343 * 60.14329 * 27 25 10 46 46 H 1.09003 * 109.47346 * 180.14608 * 27 25 10 47 47 H 1.09002 * 109.58861 * 113.81616 * 28 7 5 48 48 H 1.08996 * 109.58519 * 353.53507 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7891 2.6378 1.1813 6 8 3.5705 3.4643 0.3209 7 7 4.7056 2.8868 2.1376 8 6 4.9864 1.8957 3.1891 9 6 6.4924 1.6158 3.2161 10 6 7.2496 2.9357 3.3797 11 1 8.3204 2.7367 3.4238 12 7 6.8238 3.5923 4.6182 13 6 7.4032 3.2623 5.7895 14 8 8.2767 2.4214 5.8183 15 6 6.9648 3.9373 7.0636 16 16 7.9224 3.2832 8.4533 17 6 7.2249 4.2193 9.7730 18 1 6.4431 4.9368 9.5719 19 6 7.6794 4.0340 11.0713 20 7 7.1580 4.7329 12.0573 21 14 9.0312 2.7926 11.4193 22 1 10.3541 3.4592 11.3159 23 1 8.8591 2.2441 12.7886 24 1 8.9551 1.6876 10.4302 25 6 6.9493 3.8491 2.1891 26 1 7.2432 3.3509 1.2652 27 6 7.7324 5.1551 2.3364 28 6 5.4483 4.1545 2.1508 29 1 -0.5399 -0.9353 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9353 -0.0004 32 1 1.3587 2.1317 0.0895 33 1 2.6214 1.4026 -0.9314 34 1 3.7400 0.5065 1.0920 35 1 2.4773 1.2356 2.1130 36 1 4.4472 0.9733 2.9740 37 1 4.6706 2.2892 4.1553 38 1 6.7905 1.1387 2.2825 39 1 6.7250 0.9568 4.0525 40 1 6.1250 4.2646 4.5953 41 1 7.1307 5.0115 6.9812 42 1 5.9050 3.7451 7.2306 43 1 7.4759 4.6037 12.9646 44 1 7.4391 5.6524 3.2609 45 1 8.8001 4.9375 2.3638 46 1 7.5160 5.8061 1.4893 47 1 5.1700 4.7319 3.0325 48 1 5.2141 4.7246 1.2518 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073743557.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:02:52 Heat of formation + Delta-G solvation = -88.636680 kcal Electronic energy + Delta-G solvation = -27327.737644 eV Core-core repulsion = 23507.851587 eV Total energy + Delta-G solvation = -3819.886057 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77621 -40.55076 -38.76925 -36.29813 -35.58104 -34.66298 -34.00088 -32.55890 -31.64660 -30.37708 -27.91678 -27.82531 -26.57437 -24.64361 -23.54532 -22.15653 -20.95433 -20.66355 -19.93665 -19.69059 -18.25722 -17.82869 -17.28817 -17.06496 -16.97841 -16.77380 -16.42270 -15.95802 -15.69242 -15.43015 -15.09536 -14.95304 -14.87463 -14.68525 -14.60900 -14.19677 -13.79874 -13.66211 -13.53051 -13.32852 -13.16642 -13.00952 -12.91103 -12.80911 -12.66599 -12.53561 -12.09124 -12.00615 -11.94677 -11.87911 -11.85902 -11.55103 -11.16229 -10.94174 -10.85134 -10.51664 -10.21034 -10.13029 -9.66560 -8.97267 -8.50510 -6.20725 1.00919 1.32476 1.39693 1.47725 1.57317 1.60143 1.60915 1.97268 2.23819 2.27824 2.73210 2.87849 3.41792 3.60860 3.73282 3.82072 3.89501 3.98307 4.01716 4.16505 4.20257 4.23199 4.25470 4.39771 4.43604 4.46351 4.50025 4.59091 4.65936 4.71922 4.77533 4.84287 4.91679 4.96502 5.05674 5.08524 5.08823 5.11205 5.21472 5.30074 5.50138 5.51678 5.71548 5.77359 5.91445 6.12668 6.34651 6.46867 6.94747 7.13687 7.21794 8.61826 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015589 B = 0.002276 C = 0.002121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1795.689681 B =12300.491855 C =13200.825964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.158 4.158 3 C -0.077 4.077 4 C -0.131 4.131 5 C 0.512 3.488 6 O -0.585 6.585 7 N -0.609 5.609 8 C 0.108 3.892 9 C -0.142 4.142 10 C 0.151 3.849 11 H 0.077 0.923 12 N -0.705 5.705 13 C 0.541 3.459 14 O -0.557 6.557 15 C -0.114 4.114 16 S -0.171 6.171 17 C -0.529 4.529 18 H 0.061 0.939 19 C 0.043 3.957 20 N -0.918 5.918 21 Si 0.915 3.085 22 H -0.264 1.264 23 H -0.261 1.261 24 H -0.234 1.234 25 C -0.097 4.097 26 H 0.094 0.906 27 C -0.146 4.146 28 C 0.111 3.889 29 H 0.109 0.891 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.057 0.943 33 H 0.068 0.932 34 H 0.118 0.882 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.072 0.928 40 H 0.410 0.590 41 H 0.109 0.891 42 H 0.112 0.888 43 H 0.276 0.724 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.112 -7.616 -26.216 28.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.176 4.176 3 C -0.115 4.115 4 C -0.170 4.170 5 C 0.302 3.698 6 O -0.465 6.465 7 N -0.341 5.341 8 C -0.014 4.014 9 C -0.181 4.181 10 C 0.046 3.954 11 H 0.095 0.905 12 N -0.360 5.360 13 C 0.327 3.673 14 O -0.435 6.435 15 C -0.265 4.265 16 S 0.055 5.945 17 C -0.676 4.676 18 H 0.079 0.921 19 C -0.162 4.162 20 N -0.556 5.556 21 Si 0.737 3.263 22 H -0.188 1.188 23 H -0.185 1.185 24 H -0.158 1.158 25 C -0.116 4.116 26 H 0.112 0.888 27 C -0.203 4.203 28 C -0.011 4.011 29 H 0.127 0.873 30 H 0.110 0.890 31 H 0.143 0.857 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.137 0.863 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.109 0.891 39 H 0.091 0.909 40 H 0.247 0.753 41 H 0.127 0.873 42 H 0.130 0.870 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -6.810 -8.520 -26.439 28.601 hybrid contribution -0.829 1.348 0.831 1.787 sum -7.639 -7.173 -25.608 27.669 Atomic orbital electron populations 1.24042 0.96200 1.02394 1.00740 1.23013 0.96140 0.98250 1.00217 1.20444 0.97591 0.95621 0.97807 1.21698 0.99094 0.94606 1.01613 1.21248 0.79230 0.89511 0.79764 1.90681 1.67114 1.49906 1.38818 1.48279 1.39069 1.18490 1.28276 1.21912 0.95997 0.92938 0.90518 1.22260 0.95102 0.97127 1.03649 1.21003 0.99475 0.92280 0.82615 0.90520 1.45868 1.41072 1.43453 1.05587 1.19818 0.81068 0.81662 0.84758 1.90696 1.32105 1.33963 1.86703 1.23288 1.04596 1.04319 0.94258 1.84671 1.53563 1.55721 1.00495 1.22476 1.25032 1.26057 0.94063 0.92082 1.25588 0.98396 0.97262 0.94931 1.70019 1.43324 1.41357 1.00888 0.85854 0.79707 0.80969 0.79749 1.18831 1.18527 1.15808 1.21660 0.94956 0.97172 0.97842 0.88784 1.21761 0.99968 0.95991 1.02614 1.21667 0.90252 0.85826 1.03392 0.87275 0.88955 0.85736 0.92422 0.91369 0.86350 0.87179 0.87000 0.90959 0.89059 0.90945 0.75285 0.87269 0.86958 0.91430 0.92322 0.92310 0.91141 0.90704 0.89609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.12 14.32 67.78 0.97 -1.15 16 2 C -0.16 -1.68 9.52 25.65 0.24 -1.44 16 3 C -0.08 -1.03 4.95 29.85 0.15 -0.88 16 4 C -0.13 -1.42 4.04 29.85 0.12 -1.30 16 5 C 0.51 8.91 7.70 87.66 0.68 9.58 16 6 O -0.58 -14.93 15.39 -3.04 -0.05 -14.98 16 7 N -0.61 -8.78 2.98 -818.13 -2.44 -11.22 16 8 C 0.11 1.29 6.09 86.31 0.53 1.81 16 9 C -0.14 -2.08 5.77 30.67 0.18 -1.90 16 10 C 0.15 2.61 2.21 45.02 0.10 2.71 16 11 H 0.08 1.67 7.58 -2.38 -0.02 1.65 16 12 N -0.71 -14.10 3.60 -442.40 -1.59 -15.69 16 13 C 0.54 16.49 7.81 87.66 0.68 17.18 16 14 O -0.56 -21.43 15.53 -3.05 -0.05 -21.48 16 15 C -0.11 -3.98 6.16 71.24 0.44 -3.54 16 16 S -0.17 -8.29 18.55 -56.49 -1.05 -9.33 16 17 C -0.53 -30.10 10.04 67.95 0.68 -29.41 16 18 H 0.06 3.68 8.03 -2.91 -0.02 3.65 16 19 C 0.04 2.51 5.50 84.86 0.47 2.98 16 20 N -0.92 -55.30 13.97 21.65 0.30 -54.99 16 21 Si 0.92 44.19 27.74 68.60 1.90 46.09 16 22 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 24 H -0.23 -11.19 6.74 99.48 0.67 -10.52 16 25 C -0.10 -1.31 2.67 -10.71 -0.03 -1.34 16 26 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 27 C -0.15 -1.97 9.06 71.98 0.65 -1.32 16 28 C 0.11 1.62 5.41 86.37 0.47 2.09 16 29 H 0.11 0.90 8.06 -2.91 -0.02 0.88 16 30 H 0.09 1.05 7.84 -2.91 -0.02 1.03 16 31 H 0.12 0.94 8.06 -2.91 -0.02 0.91 16 32 H 0.06 0.95 7.75 -2.39 -0.02 0.94 16 33 H 0.07 1.06 8.10 -2.39 -0.02 1.04 16 34 H 0.12 0.76 7.70 -2.39 -0.02 0.75 16 35 H 0.11 0.91 7.95 -2.39 -0.02 0.89 16 36 H 0.11 0.82 5.97 -2.39 -0.01 0.80 16 37 H 0.07 0.95 7.74 -2.39 -0.02 0.93 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.41 6.38 6.73 -92.70 -0.62 5.76 16 41 H 0.11 3.56 8.14 -2.40 -0.02 3.54 16 42 H 0.11 3.59 8.14 -2.40 -0.02 3.57 16 43 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 44 H 0.06 0.83 7.53 -2.39 -0.02 0.81 16 45 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.97 6.64 -2.39 -0.02 0.96 16 48 H 0.09 1.51 7.00 -2.39 -0.02 1.50 16 Total: -1.00 -75.06 397.94 3.64 -71.42 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: 0.28 Total: 16.11 kcal Atomic # 6 Polarization: -12.25 SS G_CDS: 6.32 Total: -5.93 kcal Atomic # 7 Polarization: -78.17 SS G_CDS: -3.73 Total: -81.90 kcal Atomic # 8 Polarization: -36.36 SS G_CDS: -0.09 Total: -36.45 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 1.90 Total: 46.09 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.05 Total: -9.33 kcal Total: -75.06 3.64 -71.42 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073743557.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.212 kcal (2) G-P(sol) polarization free energy of solvation -75.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds