Wall clock time and date at job start Sat Apr 11 2020 06:03:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.52335 * 2 1 4 4 C 1.53196 * 109.49887 * 120.07982 * 2 1 3 5 5 N 1.46920 * 108.77435 * 174.58832 * 4 2 1 6 6 C 1.34780 * 120.63221 * 126.41518 * 5 4 2 7 7 O 1.21283 * 119.99719 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00198 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46930 * 180.02562 * 8 6 5 10 10 C 1.53008 * 117.49625 * 243.62126 * 9 8 6 11 11 C 1.53002 * 59.99929 * 252.51532 * 10 9 8 12 12 C 1.46926 * 118.73951 * 306.38547 * 5 4 2 13 13 C 1.53198 * 108.77416 * 53.61367 * 12 5 4 14 14 C 1.53037 * 109.49812 * 239.91626 * 2 1 3 15 15 H 1.09000 * 109.46257 * 298.70384 * 14 2 1 16 16 N 1.46501 * 109.45789 * 58.66688 * 14 2 1 17 17 C 1.34778 * 119.99678 * 205.00003 * 16 14 2 18 18 O 1.21285 * 120.00325 * 359.97438 * 17 16 14 19 19 C 1.50702 * 120.00030 * 179.97438 * 17 16 14 20 20 S 1.81003 * 109.47400 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00153 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99971 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00257 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99505 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00259 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46994 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46872 * 120.00155 * 25 23 21 28 28 H 1.48499 * 109.47143 * 240.00000 * 25 23 21 29 29 H 1.09000 * 109.47334 * 299.92204 * 1 2 3 30 30 H 1.09002 * 109.47438 * 59.91779 * 1 2 3 31 31 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.58545 * 294.37262 * 4 2 1 33 33 H 1.08995 * 109.58642 * 54.65750 * 4 2 1 34 34 H 1.08997 * 109.47156 * 299.99975 * 8 6 5 35 35 H 1.09001 * 109.46764 * 59.99660 * 8 6 5 36 36 H 1.08994 * 115.55024 * 29.32961 * 9 8 6 37 37 H 1.08999 * 117.49668 * 0.02562 * 10 9 8 38 38 H 1.08994 * 117.49432 * 145.02325 * 10 9 8 39 39 H 1.08995 * 117.49867 * 252.51321 * 11 10 9 40 40 H 1.08999 * 117.51631 * 107.48422 * 11 10 9 41 41 H 1.08998 * 109.58617 * 173.39731 * 12 5 4 42 42 H 1.08996 * 109.58899 * 293.68332 * 12 5 4 43 43 H 1.09003 * 109.49190 * 65.31478 * 13 12 5 44 44 H 1.08991 * 109.49689 * 185.40871 * 13 12 5 45 45 H 0.96994 * 120.00329 * 24.99530 * 16 14 2 46 46 H 1.09009 * 109.46801 * 299.99963 * 19 17 16 47 47 H 1.08997 * 109.47117 * 59.99495 * 19 17 16 48 48 H 0.97004 * 120.00125 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5045 -0.8290 1.1696 6 6 4.2811 -0.3863 2.1783 7 8 3.7731 0.1051 3.1639 8 6 5.7806 -0.5018 2.0815 9 6 6.4189 0.0695 3.3492 10 6 7.3121 1.3024 3.1963 11 6 7.9361 -0.0618 3.4969 12 6 4.1052 -1.4267 -0.0307 13 6 3.5708 -0.6951 -1.2660 14 6 2.0407 -0.7231 -1.2483 15 1 1.6967 -1.7573 -1.2352 16 7 1.5265 -0.0530 -2.4452 17 6 1.3985 -0.7383 -3.5987 18 8 1.7094 -1.9097 -3.6459 19 6 0.8690 -0.0491 -4.8298 20 16 0.8152 -1.2259 -6.2041 21 6 0.1769 -0.1845 -7.4740 22 1 -0.0506 0.8495 -7.2608 23 6 -0.0334 -0.6930 -8.7482 24 7 0.2435 -1.9534 -9.0077 25 14 -0.7108 0.4109 -10.0943 26 1 -0.9378 1.7735 -9.5495 27 1 0.2630 0.4815 -11.2132 28 1 -1.9954 -0.1447 -10.5905 29 1 -0.3634 0.5126 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7638 -0.1579 2.1389 33 1 1.6033 -1.7206 1.2994 34 1 6.0582 -1.5506 1.9763 35 1 6.1326 0.0560 1.2137 36 1 5.8166 -0.0069 4.2543 37 1 7.4445 1.7067 2.1928 38 1 7.2973 2.0374 4.0011 39 1 8.3319 -0.2244 4.4993 40 1 8.4794 -0.5556 2.6911 41 1 5.1895 -1.3246 0.0138 42 1 3.8396 -2.4824 -0.0853 43 1 3.9159 0.3388 -1.2541 44 1 3.9334 -1.1897 -2.1670 45 1 1.2781 0.8839 -2.4076 46 1 -0.1358 0.3251 -4.6329 47 1 1.5225 0.7837 -5.0895 48 1 0.0961 -2.3090 -9.8982 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073744024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:04 Heat of formation + Delta-G solvation = -60.721914 kcal Electronic energy + Delta-G solvation = -27019.326542 eV Core-core repulsion = 23200.650960 eV Total energy + Delta-G solvation = -3818.675582 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.79932 -39.49208 -37.98933 -37.12731 -34.89060 -33.14517 -32.45607 -31.49602 -30.12752 -28.98417 -26.80450 -25.56611 -24.88207 -22.76073 -22.73043 -21.57431 -20.56431 -20.30898 -19.30748 -17.88004 -17.51810 -16.64363 -16.40791 -16.10377 -15.88936 -15.39945 -15.05098 -14.83096 -14.51014 -14.37491 -14.18263 -14.14600 -13.64494 -13.51274 -13.26667 -13.04554 -12.72813 -12.64462 -12.47080 -12.26437 -12.06352 -11.89409 -11.79803 -11.72015 -11.35045 -11.17810 -11.09112 -11.04614 -10.80654 -10.74307 -10.67498 -10.41787 -10.02460 -9.83184 -9.47927 -9.10592 -8.99706 -8.90542 -8.26648 -6.53040 -6.24743 -3.95236 2.32489 2.60670 2.99221 3.04070 3.19405 3.26081 3.30489 3.42220 3.66342 4.08403 4.17670 4.27880 4.31807 4.48279 4.53393 4.57244 4.70690 4.79967 4.88236 4.95665 5.04772 5.06330 5.10726 5.13973 5.18032 5.23927 5.27144 5.35427 5.40580 5.43265 5.50175 5.52536 5.60710 5.63458 5.73808 5.75855 5.82954 5.85245 5.92132 5.95381 6.06992 6.10743 6.21244 6.59251 7.05463 7.57203 7.66496 7.86556 8.32610 8.56701 9.20974 10.82713 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.001932 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.583837 B =14492.836547 C =15025.966077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.079 0.921 4 C 0.120 3.880 5 N -0.614 5.614 6 C 0.519 3.481 7 O -0.541 6.541 8 C -0.111 4.111 9 C -0.142 4.142 10 C -0.178 4.178 11 C -0.180 4.180 12 C 0.109 3.891 13 C -0.147 4.147 14 C 0.153 3.847 15 H 0.090 0.910 16 N -0.733 5.733 17 C 0.534 3.466 18 O -0.517 6.517 19 C -0.154 4.154 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.059 0.941 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.096 0.904 33 H 0.071 0.929 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.088 0.912 45 H 0.397 0.603 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.293 4.999 23.939 26.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 H 0.097 0.903 4 C -0.003 4.003 5 N -0.348 5.348 6 C 0.308 3.692 7 O -0.418 6.418 8 C -0.150 4.150 9 C -0.160 4.160 10 C -0.215 4.215 11 C -0.217 4.217 12 C -0.014 4.014 13 C -0.187 4.187 14 C 0.047 3.953 15 H 0.108 0.892 16 N -0.387 5.387 17 C 0.320 3.680 18 O -0.391 6.391 19 C -0.305 4.305 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.206 1.206 28 H -0.205 1.205 29 H 0.078 0.922 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.087 0.913 44 H 0.106 0.894 45 H 0.231 0.769 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 10.541 3.146 24.244 26.623 hybrid contribution -0.879 2.521 -1.042 2.866 sum 9.662 5.666 23.202 25.764 Atomic orbital electron populations 1.21761 0.93527 1.02740 1.02323 1.21772 0.96912 1.00325 0.94121 0.90304 1.21629 0.79063 1.01132 0.98511 1.48189 1.06897 1.61170 1.18526 1.20595 0.89420 0.76990 0.82195 1.90677 1.75533 1.44534 1.31098 1.21268 0.91711 1.03340 0.98723 1.22067 0.92467 1.02131 0.99358 1.23038 1.04167 0.91346 1.02990 1.23004 0.95095 1.00585 1.03034 1.21790 0.98462 0.97684 0.83505 1.22357 0.96364 1.01606 0.98352 1.20866 0.92573 0.98097 0.83732 0.89153 1.46066 1.68288 1.14452 1.09856 1.20306 0.76999 0.86980 0.83703 1.90697 1.48240 1.15984 1.84190 1.23541 1.03522 1.05036 0.98388 1.85377 1.85067 1.13360 0.99528 1.22908 1.49929 0.98763 0.96759 0.90894 1.24993 0.95153 0.95477 0.97974 1.70025 1.45405 1.12994 1.21845 0.86118 0.78618 0.80050 0.80720 1.19625 1.20563 1.20547 0.92241 0.91732 0.92094 0.88549 0.91041 0.88362 0.88655 0.86443 0.88802 0.88753 0.88662 0.88684 0.89362 0.90525 0.91282 0.89394 0.76866 0.89282 0.89296 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 9.02 37.15 0.34 -0.85 16 2 C -0.11 -0.94 2.46 -90.50 -0.22 -1.16 16 3 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 4 C 0.12 1.04 5.72 -3.71 -0.02 1.02 16 5 N -0.61 -5.32 2.97 -172.77 -0.51 -5.83 16 6 C 0.52 5.09 7.70 -10.98 -0.08 5.01 16 7 O -0.54 -7.20 14.98 5.56 0.08 -7.11 16 8 C -0.11 -0.76 4.33 -27.88 -0.12 -0.88 16 9 C -0.14 -1.08 5.41 -90.61 -0.49 -1.57 16 10 C -0.18 -1.21 10.18 -26.73 -0.27 -1.48 16 11 C -0.18 -1.08 10.25 -26.73 -0.27 -1.35 16 12 C 0.11 0.81 6.34 -3.71 -0.02 0.78 16 13 C -0.15 -1.38 5.65 -26.61 -0.15 -1.53 16 14 C 0.15 1.60 1.88 -67.89 -0.13 1.47 16 15 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 16 N -0.73 -8.87 4.37 -53.76 -0.23 -9.10 16 17 C 0.53 9.26 7.81 -10.98 -0.09 9.17 16 18 O -0.52 -10.93 15.53 5.55 0.09 -10.84 16 19 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 20 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 21 C -0.54 -15.03 9.50 30.94 0.29 -14.73 16 22 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 23 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 24 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 25 Si 0.92 21.17 29.55 -169.99 -5.02 16.15 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.55 7.36 -51.93 -0.38 0.17 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.94 7.00 -51.93 -0.36 0.57 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.10 0.52 7.94 -51.93 -0.41 0.11 16 35 H 0.10 0.54 7.43 -51.93 -0.39 0.15 16 36 H 0.12 1.10 7.30 -51.93 -0.38 0.73 16 37 H 0.09 0.58 8.03 -51.93 -0.42 0.16 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.48 5.93 -51.93 -0.31 0.17 16 42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 44 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 45 H 0.40 3.86 8.31 -40.82 -0.34 3.52 16 46 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 47 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 48 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 401.11 15.07 6.04 6.04 Total: -1.00 -34.90 401.11 -10.15 -45.05 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: -8.00 Total: 1.46 kcal Atomic # 6 Polarization: -5.79 SS G_CDS: -1.12 Total: -6.91 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: -0.01 Total: -40.04 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: 0.17 Total: -17.96 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -34.90 -10.15 -45.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073744024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.668 kcal (2) G-P(sol) polarization free energy of solvation -34.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds