Wall clock time and date at job start Sat Apr 11 2020 06:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09004 * 109.52335 * 2 1 4 4 C 1.53196 * 109.49887 * 120.07982 * 2 1 3 5 5 N 1.46920 * 108.77435 * 174.58832 * 4 2 1 6 6 C 1.34780 * 120.63221 * 126.41518 * 5 4 2 7 7 O 1.21283 * 119.99719 * 359.97438 * 6 5 4 8 8 C 1.50703 * 120.00198 * 179.97438 * 6 5 4 9 9 C 1.52999 * 109.46930 * 180.02562 * 8 6 5 10 10 C 1.53008 * 117.49625 * 243.62126 * 9 8 6 11 11 C 1.53002 * 59.99929 * 252.51532 * 10 9 8 12 12 C 1.46926 * 118.73951 * 306.38547 * 5 4 2 13 13 C 1.53198 * 108.77416 * 53.61367 * 12 5 4 14 14 C 1.53037 * 109.49812 * 239.91626 * 2 1 3 15 15 H 1.09000 * 109.46257 * 298.70384 * 14 2 1 16 16 N 1.46501 * 109.45789 * 58.66688 * 14 2 1 17 17 C 1.34778 * 119.99678 * 205.00003 * 16 14 2 18 18 O 1.21285 * 120.00325 * 359.97438 * 17 16 14 19 19 C 1.50702 * 120.00030 * 179.97438 * 17 16 14 20 20 S 1.81003 * 109.47400 * 180.02562 * 19 17 16 21 21 C 1.76197 * 100.00153 * 179.97438 * 20 19 17 22 22 H 1.08001 * 119.99971 * 359.97438 * 21 20 19 23 23 C 1.38798 * 120.00257 * 179.97438 * 21 20 19 24 24 N 1.31630 * 119.99505 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00259 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46994 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.46872 * 120.00155 * 25 23 21 28 28 H 1.48499 * 109.47143 * 240.00000 * 25 23 21 29 29 H 1.09000 * 109.47334 * 299.92204 * 1 2 3 30 30 H 1.09002 * 109.47438 * 59.91779 * 1 2 3 31 31 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.58545 * 294.37262 * 4 2 1 33 33 H 1.08995 * 109.58642 * 54.65750 * 4 2 1 34 34 H 1.08997 * 109.47156 * 299.99975 * 8 6 5 35 35 H 1.09001 * 109.46764 * 59.99660 * 8 6 5 36 36 H 1.08994 * 115.55024 * 29.32961 * 9 8 6 37 37 H 1.08999 * 117.49668 * 0.02562 * 10 9 8 38 38 H 1.08994 * 117.49432 * 145.02325 * 10 9 8 39 39 H 1.08995 * 117.49867 * 252.51321 * 11 10 9 40 40 H 1.08999 * 117.51631 * 107.48422 * 11 10 9 41 41 H 1.08998 * 109.58617 * 173.39731 * 12 5 4 42 42 H 1.08996 * 109.58899 * 293.68332 * 12 5 4 43 43 H 1.09003 * 109.49190 * 65.31478 * 13 12 5 44 44 H 1.08991 * 109.49689 * 185.40871 * 13 12 5 45 45 H 0.96994 * 120.00329 * 24.99530 * 16 14 2 46 46 H 1.09009 * 109.46801 * 299.99963 * 19 17 16 47 47 H 1.08997 * 109.47117 * 59.99495 * 19 17 16 48 48 H 0.97004 * 120.00125 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0413 -0.7238 1.2496 5 7 3.5045 -0.8290 1.1696 6 6 4.2811 -0.3863 2.1783 7 8 3.7731 0.1051 3.1639 8 6 5.7806 -0.5018 2.0815 9 6 6.4189 0.0695 3.3492 10 6 7.3121 1.3024 3.1963 11 6 7.9361 -0.0618 3.4969 12 6 4.1052 -1.4267 -0.0307 13 6 3.5708 -0.6951 -1.2660 14 6 2.0407 -0.7231 -1.2483 15 1 1.6967 -1.7573 -1.2352 16 7 1.5265 -0.0530 -2.4452 17 6 1.3985 -0.7383 -3.5987 18 8 1.7094 -1.9097 -3.6459 19 6 0.8690 -0.0491 -4.8298 20 16 0.8152 -1.2259 -6.2041 21 6 0.1769 -0.1845 -7.4740 22 1 -0.0506 0.8495 -7.2608 23 6 -0.0334 -0.6930 -8.7482 24 7 0.2435 -1.9534 -9.0077 25 14 -0.7108 0.4109 -10.0943 26 1 -0.9378 1.7735 -9.5495 27 1 0.2630 0.4815 -11.2132 28 1 -1.9954 -0.1447 -10.5905 29 1 -0.3634 0.5126 0.8907 30 1 -0.3634 0.5151 -0.8892 31 1 -0.3634 -1.0276 -0.0005 32 1 1.7638 -0.1579 2.1389 33 1 1.6033 -1.7206 1.2994 34 1 6.0582 -1.5506 1.9763 35 1 6.1326 0.0560 1.2137 36 1 5.8166 -0.0069 4.2543 37 1 7.4445 1.7067 2.1928 38 1 7.2973 2.0374 4.0011 39 1 8.3319 -0.2244 4.4993 40 1 8.4794 -0.5556 2.6911 41 1 5.1895 -1.3246 0.0138 42 1 3.8396 -2.4824 -0.0853 43 1 3.9159 0.3388 -1.2541 44 1 3.9334 -1.1897 -2.1670 45 1 1.2781 0.8839 -2.4076 46 1 -0.1358 0.3251 -4.6329 47 1 1.5225 0.7837 -5.0895 48 1 0.0961 -2.3090 -9.8982 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073744024.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:03 Heat of formation + Delta-G solvation = -82.667890 kcal Electronic energy + Delta-G solvation = -27020.278190 eV Core-core repulsion = 23200.650960 eV Total energy + Delta-G solvation = -3819.627231 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61838 -40.61036 -38.87760 -37.80660 -35.84991 -34.58179 -34.04499 -32.49174 -30.79821 -30.28427 -27.70648 -27.47285 -25.77951 -23.52618 -23.21606 -22.22687 -21.66304 -21.25379 -20.06754 -19.71663 -18.29965 -17.79383 -17.42749 -17.11849 -16.87618 -16.63273 -16.37715 -15.98783 -15.86555 -15.36865 -15.01928 -14.86294 -14.71550 -14.62898 -14.33115 -14.21877 -13.86253 -13.48701 -13.36287 -13.21431 -13.15212 -12.96784 -12.91629 -12.64847 -12.51541 -12.36236 -12.31404 -12.07779 -11.98452 -11.72332 -11.49609 -11.28630 -11.15564 -10.97972 -10.92055 -10.72526 -10.26072 -10.06913 -9.72830 -8.64913 -8.34678 -6.11753 1.27869 1.41184 1.47451 1.57360 1.61110 1.64704 1.92402 2.25727 2.31011 2.91653 2.99675 3.32327 3.42636 3.59313 3.71311 3.79946 3.85357 3.96778 4.04433 4.06248 4.17311 4.22668 4.29427 4.32027 4.41796 4.51364 4.53296 4.60798 4.65073 4.67662 4.70697 4.76199 4.78219 4.82028 4.91159 5.02371 5.06152 5.07474 5.20022 5.28014 5.30570 5.35824 5.42708 5.48584 5.52842 6.20339 6.35233 6.52678 7.07222 7.13782 7.27279 8.74600 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.022693 B = 0.001932 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.583837 B =14492.836547 C =15025.966077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.119 3.881 5 N -0.611 5.611 6 C 0.515 3.485 7 O -0.582 6.582 8 C -0.105 4.105 9 C -0.158 4.158 10 C -0.184 4.184 11 C -0.166 4.166 12 C 0.112 3.888 13 C -0.142 4.142 14 C 0.151 3.849 15 H 0.071 0.929 16 N -0.708 5.708 17 C 0.539 3.461 18 O -0.560 6.560 19 C -0.132 4.132 20 S -0.147 6.147 21 C -0.546 4.546 22 H 0.082 0.918 23 C 0.014 3.986 24 N -0.910 5.910 25 Si 0.997 3.003 26 H -0.257 1.257 27 H -0.274 1.274 28 H -0.274 1.274 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.053 0.947 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.110 0.890 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.413 0.587 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.982 6.841 24.225 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.105 0.895 4 C -0.004 4.004 5 N -0.344 5.344 6 C 0.306 3.694 7 O -0.463 6.463 8 C -0.144 4.144 9 C -0.176 4.176 10 C -0.221 4.221 11 C -0.203 4.203 12 C -0.011 4.011 13 C -0.181 4.181 14 C 0.046 3.954 15 H 0.089 0.911 16 N -0.361 5.361 17 C 0.324 3.676 18 O -0.438 6.438 19 C -0.283 4.283 20 S 0.080 5.920 21 C -0.694 4.694 22 H 0.100 0.900 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.181 1.181 27 H -0.199 1.199 28 H -0.200 1.200 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.106 0.894 33 H 0.093 0.907 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.129 0.871 41 H 0.134 0.866 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.250 0.750 46 H 0.125 0.875 47 H 0.126 0.874 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.235 5.021 24.560 27.470 hybrid contribution -1.087 1.967 -0.982 2.453 sum 10.148 6.988 23.578 26.603 Atomic orbital electron populations 1.21764 0.93180 1.02480 1.02883 1.21647 0.97080 1.00232 0.92697 0.89546 1.21608 0.79483 1.01255 0.98087 1.48245 1.06797 1.60681 1.18650 1.21142 0.90663 0.76072 0.81567 1.90663 1.76450 1.46450 1.32689 1.21312 0.89271 1.04852 0.98971 1.22002 0.93286 1.03451 0.98908 1.23121 1.04072 0.91528 1.03406 1.23083 0.93725 0.99700 1.03824 1.21867 0.99945 0.97326 0.81937 1.22277 0.95083 1.02291 0.98492 1.21010 0.93652 0.97193 0.83502 0.91117 1.45808 1.66588 1.14935 1.08735 1.19956 0.76856 0.86361 0.84387 1.90690 1.50460 1.17793 1.84882 1.23389 1.05272 1.03340 0.96280 1.85526 1.85421 1.17707 1.03348 1.23242 1.49809 0.99060 0.97292 0.90034 1.26098 0.95272 0.97002 1.00738 1.70182 1.46738 1.15158 1.22621 0.84929 0.77820 0.78285 0.77070 1.18112 1.19944 1.19992 0.90993 0.91867 0.92799 0.89407 0.90680 0.86329 0.86757 0.88927 0.87929 0.89160 0.88331 0.87139 0.86595 0.90316 0.90220 0.91285 0.74992 0.87506 0.87402 0.92011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.02 71.98 0.65 -1.50 16 2 C -0.10 -1.47 2.46 -10.72 -0.03 -1.50 16 3 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 4 C 0.12 1.94 5.72 86.37 0.49 2.43 16 5 N -0.61 -9.57 2.97 -818.91 -2.43 -12.00 16 6 C 0.52 9.42 7.70 87.66 0.67 10.10 16 7 O -0.58 -15.41 14.98 -3.04 -0.05 -15.45 16 8 C -0.10 -1.20 4.33 29.85 0.13 -1.07 16 9 C -0.16 -2.23 5.41 -10.79 -0.06 -2.29 16 10 C -0.18 -2.23 10.18 30.60 0.31 -1.92 16 11 C -0.17 -1.66 10.25 30.60 0.31 -1.35 16 12 C 0.11 1.42 6.34 86.36 0.55 1.97 16 13 C -0.14 -2.40 5.65 30.67 0.17 -2.23 16 14 C 0.15 2.97 1.88 45.02 0.08 3.05 16 15 H 0.07 1.74 7.58 -2.39 -0.02 1.72 16 16 N -0.71 -15.96 4.37 -442.40 -1.93 -17.90 16 17 C 0.54 18.34 7.81 87.66 0.68 19.02 16 18 O -0.56 -24.07 15.53 -3.05 -0.05 -24.12 16 19 C -0.13 -4.97 6.16 71.24 0.44 -4.53 16 20 S -0.15 -7.96 20.57 -56.49 -1.16 -9.12 16 21 C -0.55 -30.69 9.50 67.95 0.65 -30.04 16 22 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 23 C 0.01 0.77 5.49 84.86 0.47 1.24 16 24 N -0.91 -55.21 13.22 21.65 0.29 -54.92 16 25 Si 1.00 43.07 29.55 68.60 2.03 45.10 16 26 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 27 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 28 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.06 0.96 7.36 -2.39 -0.02 0.94 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.09 1.65 7.00 -2.39 -0.02 1.63 16 33 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.12 0.88 7.94 -2.39 -0.02 0.86 16 35 H 0.11 0.90 7.43 -2.39 -0.02 0.88 16 36 H 0.09 1.78 7.30 -2.39 -0.02 1.77 16 37 H 0.10 1.04 8.03 -2.39 -0.02 1.03 16 38 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.11 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.12 0.86 5.93 -2.39 -0.01 0.85 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.41 6.91 8.31 -92.71 -0.77 6.14 16 46 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 47 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 48 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 Total: -1.00 -78.43 401.11 2.40 -76.03 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: 0.18 Total: 21.01 kcal Atomic # 6 Polarization: -14.16 SS G_CDS: 5.53 Total: -8.63 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -4.08 Total: -84.82 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.09 Total: -39.57 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: -7.96 SS G_CDS: -1.16 Total: -9.12 kcal Total: -78.43 2.40 -76.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073744024.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.642 kcal (2) G-P(sol) polarization free energy of solvation -78.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds