Wall clock time and date at job start Sat Apr 11 2020 06:03:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.49820 * 2 1 4 4 C 1.53194 * 109.49715 * 120.06554 * 2 1 3 5 5 N 1.46925 * 108.77661 * 174.59014 * 4 2 1 6 6 C 1.34770 * 120.63591 * 126.41308 * 5 4 2 7 7 O 1.21287 * 119.99554 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00686 * 179.97438 * 6 5 4 9 9 C 1.52994 * 109.47556 * 179.97438 * 8 6 5 10 10 C 1.52993 * 117.50207 * 243.62217 * 9 8 6 11 11 C 1.52993 * 60.00152 * 252.51217 * 10 9 8 12 12 C 1.46931 * 118.73466 * 306.39203 * 5 4 2 13 13 C 1.53187 * 108.77858 * 53.60925 * 12 5 4 14 14 C 1.53036 * 109.33909 * 305.34763 * 13 12 5 15 15 H 1.08997 * 109.46472 * 181.39933 * 14 13 12 16 16 N 1.46504 * 109.46133 * 301.36175 * 14 13 12 17 17 C 1.34775 * 119.99975 * 274.99667 * 16 14 13 18 18 O 1.21277 * 119.99857 * 0.02562 * 17 16 14 19 19 C 1.50696 * 119.99896 * 179.97438 * 17 16 14 20 20 S 1.81009 * 109.47087 * 180.02562 * 19 17 16 21 21 C 1.76197 * 99.99903 * 180.02562 * 20 19 17 22 22 H 1.07991 * 120.00148 * 359.97438 * 21 20 19 23 23 C 1.38804 * 119.99715 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00022 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00155 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46962 * 89.99962 * 25 23 21 27 27 H 1.48495 * 109.47565 * 210.00046 * 25 23 21 28 28 H 1.48505 * 109.47331 * 330.00554 * 25 23 21 29 29 H 1.08997 * 109.47697 * 299.93657 * 1 2 3 30 30 H 1.09009 * 109.46760 * 59.93461 * 1 2 3 31 31 H 1.08995 * 109.47470 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.58354 * 54.80010 * 4 2 1 33 33 H 1.08997 * 109.70131 * 294.44514 * 4 2 1 34 34 H 1.09004 * 109.47196 * 300.00558 * 8 6 5 35 35 H 1.09003 * 109.46944 * 59.99607 * 8 6 5 36 36 H 1.08999 * 115.54770 * 29.33067 * 9 8 6 37 37 H 1.09008 * 117.49556 * 359.97438 * 10 9 8 38 38 H 1.09001 * 117.50520 * 145.02125 * 10 9 8 39 39 H 1.09005 * 117.50010 * 252.50809 * 11 10 9 40 40 H 1.09004 * 117.50068 * 107.48972 * 11 10 9 41 41 H 1.09004 * 109.58377 * 293.81884 * 12 5 4 42 42 H 1.09007 * 109.58589 * 173.40006 * 12 5 4 43 43 H 1.09002 * 109.49796 * 65.31697 * 13 12 5 44 44 H 1.09000 * 109.49812 * 185.38420 * 13 12 5 45 45 H 0.96998 * 120.00242 * 95.00369 * 16 14 13 46 46 H 1.09001 * 109.47397 * 300.00237 * 19 17 16 47 47 H 1.08997 * 109.47365 * 60.00370 * 19 17 16 48 48 H 0.96997 * 120.00234 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 1.2498 5 7 3.5046 -0.8288 1.1699 6 6 4.2811 -0.3858 2.1784 7 8 3.7730 0.1059 3.1639 8 6 5.7805 -0.5013 2.0818 9 6 6.4189 0.0715 3.3487 10 6 7.3120 1.3041 3.1945 11 6 7.9361 -0.0597 3.4966 12 6 4.1053 -1.4266 -0.0304 13 6 3.5709 -0.6953 -1.2658 14 6 2.0409 -0.7234 -1.2490 15 1 1.6587 -0.2252 -2.1399 16 7 1.5783 -2.1134 -1.2311 17 6 1.4495 -2.7956 -2.3862 18 8 1.7169 -2.2591 -3.4404 19 6 0.9743 -4.2256 -2.3677 20 16 0.9071 -4.8610 -4.0613 21 6 0.3374 -6.4992 -3.7510 22 1 0.1452 -6.8213 -2.7383 23 6 0.1367 -7.3760 -4.8081 24 7 -0.2894 -8.5997 -4.5765 25 14 0.4699 -6.8191 -6.5597 26 1 1.8830 -7.1103 -6.9114 27 1 -0.4314 -7.5452 -7.4900 28 1 0.2232 -5.3588 -6.6703 29 1 -0.3634 0.5128 0.8905 30 1 -0.3633 0.5149 -0.8895 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6052 -1.7212 1.2984 33 1 1.7636 -0.1595 2.1402 34 1 6.0581 -1.5502 1.9768 35 1 6.1327 0.0562 1.2139 36 1 5.8166 -0.0040 4.2540 37 1 7.4450 1.7068 2.1903 38 1 7.2973 2.0401 3.9984 39 1 8.3320 -0.2211 4.4993 40 1 8.4794 -0.5541 2.6912 41 1 3.8375 -2.4818 -0.0860 42 1 5.1896 -1.3246 0.0142 43 1 3.9159 0.3386 -1.2541 44 1 3.9339 -1.1899 -2.1667 45 1 1.3647 -2.5426 -0.3879 46 1 1.6650 -4.8305 -1.7802 47 1 -0.0193 -4.2726 -1.9220 48 1 -0.4293 -9.2126 -5.3151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073744026.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:12 Heat of formation + Delta-G solvation = -57.624198 kcal Electronic energy + Delta-G solvation = -27481.003500 eV Core-core repulsion = 23662.462245 eV Total energy + Delta-G solvation = -3818.541255 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.97913 -39.58008 -38.00198 -37.15633 -34.73398 -33.14137 -32.46805 -31.61492 -30.14928 -29.08154 -26.77690 -25.68767 -25.39629 -22.78687 -22.74518 -21.58997 -21.00062 -19.99097 -18.99283 -18.02063 -17.48685 -16.61596 -16.55467 -16.25961 -15.77608 -15.40492 -15.18245 -14.97275 -14.58885 -14.35807 -14.29794 -14.15643 -13.71268 -13.53421 -13.48045 -13.09721 -12.83911 -12.82395 -12.47416 -12.28649 -12.05623 -11.91692 -11.87257 -11.73022 -11.33983 -11.29653 -11.23357 -11.03883 -10.85005 -10.74332 -10.59673 -10.41991 -10.01759 -9.88874 -9.57104 -9.13241 -9.03099 -8.89556 -8.54006 -6.95425 -6.31822 -4.03891 2.32480 2.59234 2.72498 2.90946 3.26846 3.30962 3.42184 3.47350 3.61614 4.06539 4.27316 4.29504 4.30128 4.44279 4.50792 4.53784 4.68257 4.71299 4.71800 4.83451 4.90873 5.04178 5.06612 5.07217 5.12407 5.22603 5.25120 5.26757 5.29631 5.39775 5.43209 5.51027 5.53846 5.66925 5.70990 5.72350 5.73482 5.80632 5.83366 5.91941 5.95810 5.96760 6.18858 6.50116 7.04495 7.53736 7.86144 7.91141 8.38736 8.43177 9.14194 10.77380 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.002270 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.022491 B =12333.045611 C =12977.915938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.087 0.913 4 C 0.114 3.886 5 N -0.613 5.613 6 C 0.519 3.481 7 O -0.541 6.541 8 C -0.111 4.111 9 C -0.141 4.141 10 C -0.179 4.179 11 C -0.180 4.180 12 C 0.107 3.893 13 C -0.147 4.147 14 C 0.152 3.848 15 H 0.093 0.907 16 N -0.731 5.731 17 C 0.533 3.467 18 O -0.518 6.518 19 C -0.125 4.125 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.397 0.603 46 H 0.095 0.905 47 H 0.096 0.904 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.544 19.340 14.860 26.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 H 0.106 0.894 4 C -0.009 4.009 5 N -0.346 5.346 6 C 0.308 3.692 7 O -0.418 6.418 8 C -0.150 4.150 9 C -0.160 4.160 10 C -0.215 4.215 11 C -0.217 4.217 12 C -0.016 4.016 13 C -0.187 4.187 14 C 0.047 3.953 15 H 0.111 0.889 16 N -0.386 5.386 17 C 0.319 3.681 18 O -0.392 6.392 19 C -0.276 4.276 20 S 0.086 5.914 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.113 0.887 36 H 0.136 0.864 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.114 0.886 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.232 0.768 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.665 20.312 13.553 27.061 hybrid contribution -0.323 -1.016 0.711 1.282 sum 11.342 19.295 14.264 26.541 Atomic orbital electron populations 1.21763 0.93496 1.02768 1.02355 1.21784 0.96939 1.00263 0.94090 0.89444 1.21654 0.79290 1.00872 0.99059 1.48153 1.06761 1.61188 1.18531 1.20588 0.89419 0.76999 0.82179 1.90681 1.75520 1.44541 1.31066 1.21263 0.91711 1.03360 0.98682 1.22062 0.92493 1.02057 0.99378 1.23034 1.04226 0.91363 1.02926 1.23007 0.95118 1.00534 1.03068 1.21788 0.98283 0.97807 0.83744 1.22322 0.96300 1.01618 0.98434 1.20876 0.93142 0.82595 0.98680 0.88863 1.46110 1.70004 1.13245 1.09222 1.20267 0.76638 0.87823 0.83398 1.90697 1.48466 1.69698 1.30363 1.23285 1.04586 0.94540 1.05164 1.84781 1.88244 1.14760 1.03658 1.22311 1.51573 0.95057 0.98002 0.89410 1.24723 0.93346 0.94001 0.99293 1.69938 1.43804 1.05059 1.32824 0.86731 0.79298 0.81685 0.84088 1.19226 1.19950 1.15943 0.92189 0.91857 0.91979 0.91480 0.88527 0.88349 0.88716 0.86430 0.88848 0.88757 0.88637 0.88681 0.90652 0.89560 0.90657 0.89429 0.76805 0.88623 0.88549 0.91926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.05 37.16 0.34 -0.78 16 2 C -0.11 -0.87 2.67 -90.47 -0.24 -1.11 16 3 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 4 C 0.11 0.94 5.42 -3.71 -0.02 0.92 16 5 N -0.61 -5.16 2.97 -172.77 -0.51 -5.67 16 6 C 0.52 5.07 7.70 -10.99 -0.08 4.98 16 7 O -0.54 -7.17 14.98 5.55 0.08 -7.09 16 8 C -0.11 -0.77 4.33 -27.89 -0.12 -0.89 16 9 C -0.14 -1.09 5.41 -90.63 -0.49 -1.58 16 10 C -0.18 -1.20 10.18 -26.74 -0.27 -1.47 16 11 C -0.18 -1.11 10.25 -26.74 -0.27 -1.38 16 12 C 0.11 0.79 6.08 -3.71 -0.02 0.77 16 13 C -0.15 -1.26 5.77 -26.62 -0.15 -1.41 16 14 C 0.15 1.47 2.22 -67.85 -0.15 1.31 16 15 H 0.09 1.08 7.58 -51.93 -0.39 0.69 16 16 N -0.73 -8.02 3.60 -53.73 -0.19 -8.21 16 17 C 0.53 8.50 7.81 -10.99 -0.09 8.42 16 18 O -0.52 -10.19 15.52 5.56 0.09 -10.11 16 19 C -0.13 -2.27 6.16 36.00 0.22 -2.05 16 20 S -0.14 -3.44 18.55 -107.50 -1.99 -5.44 16 21 C -0.52 -14.72 10.04 30.94 0.31 -14.41 16 22 H 0.09 2.59 8.03 -52.49 -0.42 2.16 16 23 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 24 N -0.88 -26.22 13.97 55.49 0.78 -25.44 16 25 Si 0.86 21.43 27.74 -169.99 -4.71 16.71 16 26 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 27 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 28 H -0.24 -5.86 6.74 56.52 0.38 -5.48 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.52 8.14 -51.92 -0.42 0.09 16 31 H 0.06 0.50 7.53 -51.93 -0.39 0.11 16 32 H 0.07 0.51 6.64 -51.93 -0.34 0.17 16 33 H 0.10 0.92 7.00 -51.93 -0.36 0.55 16 34 H 0.10 0.56 7.94 -51.93 -0.41 0.15 16 35 H 0.09 0.53 7.42 -51.93 -0.39 0.14 16 36 H 0.12 1.13 7.30 -51.93 -0.38 0.75 16 37 H 0.09 0.56 8.03 -51.92 -0.42 0.14 16 38 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.08 0.61 7.74 -51.93 -0.40 0.20 16 42 H 0.09 0.48 5.93 -51.92 -0.31 0.18 16 43 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.40 3.59 6.73 -40.82 -0.27 3.32 16 46 H 0.10 1.61 8.14 -51.92 -0.42 1.19 16 47 H 0.10 1.65 8.14 -51.92 -0.42 1.22 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -34.22 394.49 -9.55 -43.77 By element: Atomic # 1 Polarization: 9.45 SS G_CDS: -7.88 Total: 1.57 kcal Atomic # 6 Polarization: -4.90 SS G_CDS: -1.14 Total: -6.04 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.07 Total: -39.33 kcal Atomic # 8 Polarization: -17.36 SS G_CDS: 0.17 Total: -17.19 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.71 Total: 16.71 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.44 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.22 -9.55 -43.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073744026.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.858 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds