Wall clock time and date at job start Sat Apr 11 2020 06:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.49820 * 2 1 4 4 C 1.53194 * 109.49715 * 120.06554 * 2 1 3 5 5 N 1.46925 * 108.77661 * 174.59014 * 4 2 1 6 6 C 1.34770 * 120.63591 * 126.41308 * 5 4 2 7 7 O 1.21287 * 119.99554 * 359.97438 * 6 5 4 8 8 C 1.50697 * 120.00686 * 179.97438 * 6 5 4 9 9 C 1.52994 * 109.47556 * 179.97438 * 8 6 5 10 10 C 1.52993 * 117.50207 * 243.62217 * 9 8 6 11 11 C 1.52993 * 60.00152 * 252.51217 * 10 9 8 12 12 C 1.46931 * 118.73466 * 306.39203 * 5 4 2 13 13 C 1.53187 * 108.77858 * 53.60925 * 12 5 4 14 14 C 1.53036 * 109.33909 * 305.34763 * 13 12 5 15 15 H 1.08997 * 109.46472 * 181.39933 * 14 13 12 16 16 N 1.46504 * 109.46133 * 301.36175 * 14 13 12 17 17 C 1.34775 * 119.99975 * 274.99667 * 16 14 13 18 18 O 1.21277 * 119.99857 * 0.02562 * 17 16 14 19 19 C 1.50696 * 119.99896 * 179.97438 * 17 16 14 20 20 S 1.81009 * 109.47087 * 180.02562 * 19 17 16 21 21 C 1.76197 * 99.99903 * 180.02562 * 20 19 17 22 22 H 1.07991 * 120.00148 * 359.97438 * 21 20 19 23 23 C 1.38804 * 119.99715 * 180.02562 * 21 20 19 24 24 N 1.31631 * 120.00022 * 180.02562 * 23 21 20 25 25 Si 1.86797 * 120.00155 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46962 * 89.99962 * 25 23 21 27 27 H 1.48495 * 109.47565 * 210.00046 * 25 23 21 28 28 H 1.48505 * 109.47331 * 330.00554 * 25 23 21 29 29 H 1.08997 * 109.47697 * 299.93657 * 1 2 3 30 30 H 1.09009 * 109.46760 * 59.93461 * 1 2 3 31 31 H 1.08995 * 109.47470 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.58354 * 54.80010 * 4 2 1 33 33 H 1.08997 * 109.70131 * 294.44514 * 4 2 1 34 34 H 1.09004 * 109.47196 * 300.00558 * 8 6 5 35 35 H 1.09003 * 109.46944 * 59.99607 * 8 6 5 36 36 H 1.08999 * 115.54770 * 29.33067 * 9 8 6 37 37 H 1.09008 * 117.49556 * 359.97438 * 10 9 8 38 38 H 1.09001 * 117.50520 * 145.02125 * 10 9 8 39 39 H 1.09005 * 117.50010 * 252.50809 * 11 10 9 40 40 H 1.09004 * 117.50068 * 107.48972 * 11 10 9 41 41 H 1.09004 * 109.58377 * 293.81884 * 12 5 4 42 42 H 1.09007 * 109.58589 * 173.40006 * 12 5 4 43 43 H 1.09002 * 109.49796 * 65.31697 * 13 12 5 44 44 H 1.09000 * 109.49812 * 185.38420 * 13 12 5 45 45 H 0.96998 * 120.00242 * 95.00369 * 16 14 13 46 46 H 1.09001 * 109.47397 * 300.00237 * 19 17 16 47 47 H 1.08997 * 109.47365 * 60.00370 * 19 17 16 48 48 H 0.96997 * 120.00234 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7235 1.2498 5 7 3.5046 -0.8288 1.1699 6 6 4.2811 -0.3858 2.1784 7 8 3.7730 0.1059 3.1639 8 6 5.7805 -0.5013 2.0818 9 6 6.4189 0.0715 3.3487 10 6 7.3120 1.3041 3.1945 11 6 7.9361 -0.0597 3.4966 12 6 4.1053 -1.4266 -0.0304 13 6 3.5709 -0.6953 -1.2658 14 6 2.0409 -0.7234 -1.2490 15 1 1.6587 -0.2252 -2.1399 16 7 1.5783 -2.1134 -1.2311 17 6 1.4495 -2.7956 -2.3862 18 8 1.7169 -2.2591 -3.4404 19 6 0.9743 -4.2256 -2.3677 20 16 0.9071 -4.8610 -4.0613 21 6 0.3374 -6.4992 -3.7510 22 1 0.1452 -6.8213 -2.7383 23 6 0.1367 -7.3760 -4.8081 24 7 -0.2894 -8.5997 -4.5765 25 14 0.4699 -6.8191 -6.5597 26 1 1.8830 -7.1103 -6.9114 27 1 -0.4314 -7.5452 -7.4900 28 1 0.2232 -5.3588 -6.6703 29 1 -0.3634 0.5128 0.8905 30 1 -0.3633 0.5149 -0.8895 31 1 -0.3634 -1.0276 -0.0005 32 1 1.6052 -1.7212 1.2984 33 1 1.7636 -0.1595 2.1402 34 1 6.0581 -1.5502 1.9768 35 1 6.1327 0.0562 1.2139 36 1 5.8166 -0.0040 4.2540 37 1 7.4450 1.7068 2.1903 38 1 7.2973 2.0401 3.9984 39 1 8.3320 -0.2211 4.4993 40 1 8.4794 -0.5541 2.6912 41 1 3.8375 -2.4818 -0.0860 42 1 5.1896 -1.3246 0.0142 43 1 3.9159 0.3386 -1.2541 44 1 3.9339 -1.1899 -2.1667 45 1 1.3647 -2.5426 -0.3879 46 1 1.6650 -4.8305 -1.7802 47 1 -0.0193 -4.2726 -1.9220 48 1 -0.4293 -9.2126 -5.3151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073744026.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:11 Heat of formation + Delta-G solvation = -78.732184 kcal Electronic energy + Delta-G solvation = -27481.918811 eV Core-core repulsion = 23662.462245 eV Total energy + Delta-G solvation = -3819.456566 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.79274 -40.58613 -38.89811 -37.81730 -35.59765 -34.66084 -34.01578 -32.55523 -30.75109 -30.35623 -27.86074 -27.43827 -26.18440 -23.54790 -23.21950 -22.28770 -22.00096 -20.75096 -19.93349 -19.74028 -18.31725 -17.85691 -17.28530 -17.22862 -17.03934 -16.68930 -16.30521 -15.96751 -15.75970 -15.38218 -15.08293 -14.97090 -14.84848 -14.72587 -14.65746 -14.24562 -13.82333 -13.63627 -13.44924 -13.32821 -13.09045 -13.00412 -12.83316 -12.70388 -12.55450 -12.35853 -12.30959 -11.99792 -11.98011 -11.86225 -11.55245 -11.28786 -11.15942 -10.97223 -10.93953 -10.71946 -10.51475 -10.12948 -9.66293 -8.97097 -8.50401 -6.20568 1.01133 1.32312 1.47927 1.57471 1.60654 1.61247 1.92843 2.23937 2.27941 2.73383 2.87933 2.91349 3.42351 3.61592 3.70233 3.79072 3.82417 3.89801 4.01444 4.04673 4.16624 4.20086 4.24782 4.28621 4.41996 4.50159 4.51568 4.59420 4.63742 4.70367 4.74435 4.76988 4.81379 4.83428 4.95397 5.03882 5.06978 5.08744 5.11570 5.27553 5.29681 5.35396 5.50648 5.52181 5.71705 6.12848 6.35040 6.47170 6.94865 7.14697 7.22087 8.61938 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017864 B = 0.002270 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1567.022491 B =12333.045611 C =12977.915938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.093 0.907 4 C 0.112 3.888 5 N -0.609 5.609 6 C 0.515 3.485 7 O -0.583 6.583 8 C -0.105 4.105 9 C -0.158 4.158 10 C -0.182 4.182 11 C -0.168 4.168 12 C 0.108 3.892 13 C -0.142 4.142 14 C 0.151 3.849 15 H 0.077 0.923 16 N -0.705 5.705 17 C 0.542 3.458 18 O -0.557 6.557 19 C -0.114 4.114 20 S -0.171 6.171 21 C -0.528 4.528 22 H 0.061 0.939 23 C 0.043 3.957 24 N -0.918 5.918 25 Si 0.915 3.085 26 H -0.262 1.262 27 H -0.262 1.262 28 H -0.236 1.236 29 H 0.069 0.931 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.092 0.908 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.110 0.890 41 H 0.073 0.927 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.410 0.590 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.957 20.539 14.847 28.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.111 0.889 4 C -0.010 4.010 5 N -0.341 5.341 6 C 0.305 3.695 7 O -0.463 6.463 8 C -0.144 4.144 9 C -0.177 4.177 10 C -0.219 4.219 11 C -0.205 4.205 12 C -0.014 4.014 13 C -0.182 4.182 14 C 0.047 3.953 15 H 0.095 0.905 16 N -0.360 5.360 17 C 0.327 3.673 18 O -0.435 6.435 19 C -0.264 4.264 20 S 0.055 5.945 21 C -0.676 4.676 22 H 0.079 0.921 23 C -0.162 4.162 24 N -0.556 5.556 25 Si 0.737 3.263 26 H -0.186 1.186 27 H -0.186 1.186 28 H -0.159 1.159 29 H 0.088 0.912 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.110 0.890 37 H 0.122 0.878 38 H 0.109 0.891 39 H 0.116 0.884 40 H 0.128 0.872 41 H 0.091 0.909 42 H 0.129 0.871 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.247 0.753 46 H 0.130 0.870 47 H 0.128 0.872 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.078 21.513 13.574 28.602 hybrid contribution -0.774 -1.318 0.899 1.773 sum 12.304 20.194 14.472 27.724 Atomic orbital electron populations 1.21761 0.93235 1.02661 1.02673 1.21665 0.97026 1.00153 0.92795 0.88865 1.21660 0.79568 1.01192 0.98627 1.48195 1.06720 1.60620 1.18552 1.21112 0.90620 0.76138 0.81609 1.90667 1.76425 1.46486 1.32697 1.21301 0.89430 1.04684 0.98975 1.21995 0.93255 1.03509 0.98922 1.23120 1.03879 0.91443 1.03455 1.23083 0.93799 0.99867 1.03781 1.21869 0.99746 0.97252 0.82542 1.22260 0.94992 1.02596 0.98307 1.21008 0.94238 0.81198 0.98884 0.90514 1.45864 1.68236 1.13611 1.08257 1.19813 0.76517 0.86917 0.84050 1.90693 1.50615 1.70173 1.31971 1.23285 1.06131 0.96172 1.00857 1.84674 1.88027 1.12502 1.09274 1.22476 1.51109 0.97141 0.96888 0.92076 1.25591 0.93265 0.94114 1.03212 1.70020 1.45074 1.06214 1.34281 0.85852 0.79555 0.81255 0.79608 1.18619 1.18617 1.15949 0.91169 0.92308 0.92282 0.90643 0.89637 0.86628 0.86656 0.89022 0.87781 0.89138 0.88426 0.87182 0.90876 0.87053 0.89162 0.90928 0.75280 0.86972 0.87236 0.91435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.05 71.98 0.65 -1.33 16 2 C -0.10 -1.33 2.67 -10.69 -0.03 -1.36 16 3 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 4 C 0.11 1.66 5.42 86.36 0.47 2.12 16 5 N -0.61 -8.90 2.97 -818.90 -2.43 -11.33 16 6 C 0.51 9.23 7.70 87.66 0.67 9.90 16 7 O -0.58 -15.27 14.98 -3.05 -0.05 -15.32 16 8 C -0.10 -1.20 4.33 29.85 0.13 -1.07 16 9 C -0.16 -2.25 5.41 -10.80 -0.06 -2.31 16 10 C -0.18 -2.16 10.18 30.59 0.31 -1.85 16 11 C -0.17 -1.73 10.25 30.59 0.31 -1.41 16 12 C 0.11 1.28 6.08 86.36 0.53 1.81 16 13 C -0.14 -2.09 5.77 30.67 0.18 -1.91 16 14 C 0.15 2.63 2.22 45.04 0.10 2.73 16 15 H 0.08 1.68 7.58 -2.39 -0.02 1.66 16 16 N -0.71 -14.07 3.60 -442.31 -1.59 -15.66 16 17 C 0.54 16.47 7.81 87.66 0.68 17.15 16 18 O -0.56 -21.40 15.52 -3.02 -0.05 -21.44 16 19 C -0.11 -3.97 6.16 71.23 0.44 -3.53 16 20 S -0.17 -8.29 18.55 -56.49 -1.05 -9.34 16 21 C -0.53 -30.07 10.04 67.96 0.68 -29.38 16 22 H 0.06 3.68 8.03 -2.91 -0.02 3.65 16 23 C 0.04 2.51 5.50 84.86 0.47 2.98 16 24 N -0.92 -55.27 13.97 21.65 0.30 -54.97 16 25 Si 0.92 44.17 27.74 68.60 1.90 46.07 16 26 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 27 H -0.26 -11.93 7.11 99.48 0.71 -11.22 16 28 H -0.24 -11.30 6.74 99.48 0.67 -10.63 16 29 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.06 0.84 7.53 -2.39 -0.02 0.82 16 32 H 0.08 0.98 6.64 -2.39 -0.02 0.97 16 33 H 0.09 1.53 7.00 -2.39 -0.02 1.52 16 34 H 0.12 0.93 7.94 -2.39 -0.02 0.92 16 35 H 0.12 0.86 7.42 -2.39 -0.02 0.84 16 36 H 0.09 1.79 7.30 -2.39 -0.02 1.78 16 37 H 0.10 0.99 8.03 -2.38 -0.02 0.98 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.10 0.95 8.14 -2.38 -0.02 0.93 16 40 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.95 7.74 -2.38 -0.02 0.93 16 42 H 0.11 0.81 5.93 -2.38 -0.01 0.80 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.41 6.36 6.73 -92.71 -0.62 5.74 16 46 H 0.11 3.58 8.14 -2.40 -0.02 3.56 16 47 H 0.11 3.57 8.14 -2.40 -0.02 3.55 16 48 H 0.28 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -75.29 394.49 2.87 -72.41 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.30 Total: 17.04 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 5.54 Total: -7.47 kcal Atomic # 7 Polarization: -78.24 SS G_CDS: -3.72 Total: -81.96 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -0.09 Total: -36.76 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.90 Total: 46.07 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.05 Total: -9.34 kcal Total: -75.29 2.87 -72.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073744026.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.319 kcal (2) G-P(sol) polarization free energy of solvation -75.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.413 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds