Wall clock time and date at job start Sat Apr 11 2020 06:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.50104 * 2 1 4 4 C 1.53194 * 109.50045 * 239.90169 * 2 1 3 5 5 N 1.46922 * 108.77828 * 185.41489 * 4 2 1 6 6 C 1.34774 * 120.63425 * 233.63073 * 5 4 2 7 7 O 1.21288 * 119.99519 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.00526 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47272 * 180.02562 * 8 6 5 10 10 C 1.53007 * 117.49551 * 243.74551 * 9 8 6 11 11 C 1.53003 * 117.49922 * 175.08713 * 9 8 6 12 12 C 1.46931 * 118.73954 * 53.60532 * 5 4 2 13 13 C 1.53160 * 108.76755 * 306.39511 * 12 5 4 14 14 C 1.53036 * 109.33037 * 54.64161 * 13 12 5 15 15 H 1.09005 * 109.45756 * 178.61516 * 14 13 12 16 16 N 1.46499 * 109.46017 * 58.64408 * 14 13 12 17 17 C 1.34778 * 120.00278 * 84.96841 * 16 14 13 18 18 O 1.21278 * 119.99748 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00209 * 180.02562 * 17 16 14 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31630 * 119.99849 * 180.27695 * 23 21 20 25 25 Si 1.86800 * 120.00065 * 0.28024 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99557 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00077 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99899 * 25 23 21 29 29 H 1.09004 * 109.47011 * 299.93518 * 1 2 3 30 30 H 1.08998 * 109.46722 * 59.93556 * 1 2 3 31 31 H 1.09001 * 109.46911 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.58393 * 305.20002 * 4 2 1 33 33 H 1.08995 * 109.58707 * 65.62347 * 4 2 1 34 34 H 1.09005 * 109.47085 * 299.99634 * 8 6 5 35 35 H 1.08995 * 109.47347 * 59.99987 * 8 6 5 36 36 H 1.08996 * 115.55491 * 29.41145 * 9 8 6 37 37 H 1.08994 * 117.50153 * 0.02562 * 10 9 8 38 38 H 1.09000 * 117.49557 * 145.02077 * 10 9 8 39 39 H 1.08996 * 117.49968 * 214.97549 * 11 9 8 40 40 H 1.08999 * 117.49844 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.58425 * 66.18357 * 12 5 4 42 42 H 1.09000 * 109.58802 * 186.60556 * 12 5 4 43 43 H 1.09001 * 109.49788 * 294.67534 * 13 12 5 44 44 H 1.09004 * 109.47867 * 174.59715 * 13 12 5 45 45 H 0.97000 * 119.99972 * 264.97197 * 16 14 13 46 46 H 1.08999 * 109.47278 * 59.99800 * 19 17 16 47 47 H 1.09002 * 109.46837 * 300.00183 * 19 17 16 48 48 H 0.97005 * 119.99878 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7242 -1.2494 5 7 3.5046 -0.8295 -1.1693 6 6 4.2812 -0.3863 -2.1777 7 8 3.7732 0.1047 -3.1635 8 6 5.7807 -0.5008 -2.0804 9 6 6.4192 0.0721 -3.3473 10 6 7.2090 -0.8898 -4.2373 11 6 7.9463 0.1535 -3.3940 12 6 4.1053 -1.4267 0.0313 13 6 3.5708 -0.6947 1.2659 14 6 2.0408 -0.7227 1.2486 15 1 1.6584 -0.2236 2.1390 16 7 1.5783 -2.1127 1.2315 17 6 1.4497 -2.7944 2.3870 18 8 1.7164 -2.2570 3.4410 19 6 0.9745 -4.2244 2.3694 20 16 0.9062 -4.8584 4.0633 21 6 0.3367 -6.4968 3.7540 22 1 0.1451 -6.8198 2.7414 23 6 0.1403 -7.3745 4.8113 24 7 -0.2799 -8.6002 4.5797 25 14 0.4723 -6.8161 6.5627 26 1 -0.7662 -6.2348 7.1400 27 1 0.9010 -7.9793 7.3802 28 1 1.5461 -5.7903 6.5600 29 1 -0.3633 0.5128 0.8906 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -1.7220 -1.2975 33 1 1.7638 -0.1586 -2.1388 34 1 6.1322 0.0573 -1.2126 35 1 6.0589 -1.5494 -1.9751 36 1 5.8576 0.8664 -3.8390 37 1 7.2734 -1.9307 -3.9205 38 1 7.1673 -0.7280 -5.3144 39 1 8.3894 1.0011 -3.9166 40 1 8.4961 -0.2007 -2.5219 41 1 3.8376 -2.4818 0.0876 42 1 5.1896 -1.3246 -0.0132 43 1 3.9160 0.3392 1.2537 44 1 3.9337 -1.1891 2.1671 45 1 1.3647 -2.5424 0.3885 46 1 1.6651 -4.8295 1.7821 47 1 -0.0192 -4.2715 1.9238 48 1 -0.4175 -9.2135 5.3186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073744027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:16 Heat of formation + Delta-G solvation = -57.597177 kcal Electronic energy + Delta-G solvation = -27478.269666 eV Core-core repulsion = 23659.729583 eV Total energy + Delta-G solvation = -3818.540083 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.98084 -39.57919 -37.99968 -37.14834 -34.73465 -33.14137 -32.46835 -31.61448 -30.14692 -29.08183 -26.77759 -25.68738 -25.39535 -22.78302 -22.74475 -21.57825 -21.00668 -20.00302 -18.97094 -18.01806 -17.48972 -16.64025 -16.55997 -16.23549 -15.74954 -15.50112 -15.10595 -14.95483 -14.59944 -14.44964 -14.27861 -13.93472 -13.82515 -13.57928 -13.49209 -13.11090 -12.82513 -12.81596 -12.44511 -12.29211 -12.05870 -11.90221 -11.87569 -11.73650 -11.33792 -11.29849 -11.23488 -11.03835 -10.85043 -10.73480 -10.59720 -10.41875 -10.01369 -9.88872 -9.57058 -9.13269 -9.03089 -8.89493 -8.53975 -6.95459 -6.31885 -4.03936 2.32586 2.59146 2.72529 2.90955 3.26831 3.31208 3.42661 3.47132 3.61543 4.06596 4.27498 4.29600 4.30153 4.44512 4.49809 4.55042 4.68433 4.71400 4.72338 4.83708 4.92114 5.03464 5.07127 5.07743 5.12205 5.20989 5.24253 5.27434 5.31509 5.39912 5.43238 5.51760 5.54201 5.66925 5.70964 5.72409 5.74349 5.80785 5.83455 5.91928 5.95892 5.96695 6.18933 6.50192 7.04538 7.53728 7.86194 7.91070 8.38648 8.43184 9.14158 10.77308 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.002304 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.093246 B =12148.758509 C =12907.670466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.087 0.913 4 C 0.114 3.886 5 N -0.613 5.613 6 C 0.519 3.481 7 O -0.541 6.541 8 C -0.111 4.111 9 C -0.142 4.142 10 C -0.178 4.178 11 C -0.180 4.180 12 C 0.107 3.893 13 C -0.147 4.147 14 C 0.152 3.848 15 H 0.093 0.907 16 N -0.731 5.731 17 C 0.533 3.467 18 O -0.518 6.518 19 C -0.125 4.125 20 S -0.140 6.140 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.062 0.938 30 H 0.059 0.941 31 H 0.061 0.939 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.095 0.905 36 H 0.117 0.883 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.075 0.925 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.087 0.913 45 H 0.397 0.603 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.679 18.949 -15.039 26.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 H 0.106 0.894 4 C -0.009 4.009 5 N -0.346 5.346 6 C 0.308 3.692 7 O -0.418 6.418 8 C -0.150 4.150 9 C -0.160 4.160 10 C -0.215 4.215 11 C -0.217 4.217 12 C -0.016 4.016 13 C -0.187 4.187 14 C 0.047 3.953 15 H 0.111 0.889 16 N -0.386 5.386 17 C 0.319 3.681 18 O -0.392 6.392 19 C -0.276 4.276 20 S 0.086 5.914 21 C -0.670 4.670 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.200 1.200 28 H -0.159 1.159 29 H 0.081 0.919 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.115 0.885 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.113 0.887 40 H 0.113 0.887 41 H 0.093 0.907 42 H 0.105 0.895 43 H 0.094 0.906 44 H 0.106 0.894 45 H 0.232 0.768 46 H 0.114 0.886 47 H 0.114 0.886 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 11.805 19.917 -13.734 26.920 hybrid contribution -0.390 -1.043 -0.727 1.330 sum 11.415 18.874 -14.461 26.375 Atomic orbital electron populations 1.21764 0.93496 1.02765 1.02355 1.21778 0.96941 1.00268 0.94103 0.89429 1.21657 0.79294 1.00854 0.99066 1.48154 1.06759 1.61227 1.18496 1.20589 0.89428 0.77030 0.82138 1.90681 1.75523 1.44638 1.30966 1.21263 0.91694 1.03098 0.98961 1.22064 0.93234 1.02958 0.97751 1.23051 1.04301 0.96026 0.98140 1.23015 0.94044 1.01862 1.02823 1.21783 0.98290 0.97803 0.83745 1.22319 0.96286 1.01633 0.98433 1.20865 0.93154 0.82598 0.98690 0.88868 1.46111 1.70009 1.13247 1.09218 1.20268 0.76638 0.87825 0.83396 1.90697 1.48473 1.69659 1.30391 1.23285 1.04566 0.94556 1.05176 1.84782 1.88273 1.14612 1.03759 1.22314 1.51459 0.95156 0.98024 0.89414 1.24724 0.93356 0.93982 0.99297 1.69940 1.43885 1.04993 1.32811 0.86730 0.81002 0.79879 0.84196 1.19220 1.19953 1.15929 0.91862 0.92181 0.91983 0.91477 0.88529 0.88397 0.88675 0.86466 0.88771 0.88741 0.88666 0.88694 0.90685 0.89550 0.90620 0.89428 0.76808 0.88591 0.88592 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.05 37.16 0.34 -0.78 16 2 C -0.11 -0.87 2.67 -90.50 -0.24 -1.11 16 3 H 0.09 0.68 8.14 -51.92 -0.42 0.26 16 4 C 0.11 0.94 5.42 -3.71 -0.02 0.92 16 5 N -0.61 -5.16 2.97 -172.79 -0.51 -5.67 16 6 C 0.52 5.07 7.70 -10.99 -0.08 4.98 16 7 O -0.54 -7.17 14.98 5.55 0.08 -7.09 16 8 C -0.11 -0.77 4.33 -27.89 -0.12 -0.89 16 9 C -0.14 -1.10 5.41 -90.61 -0.49 -1.59 16 10 C -0.18 -1.23 10.18 -26.69 -0.27 -1.51 16 11 C -0.18 -1.10 10.25 -26.69 -0.27 -1.38 16 12 C 0.11 0.79 6.08 -3.72 -0.02 0.77 16 13 C -0.15 -1.26 5.77 -26.63 -0.15 -1.41 16 14 C 0.15 1.46 2.21 -67.89 -0.15 1.31 16 15 H 0.09 1.08 7.58 -51.93 -0.39 0.68 16 16 N -0.73 -8.02 3.60 -53.77 -0.19 -8.22 16 17 C 0.53 8.51 7.81 -10.99 -0.09 8.42 16 18 O -0.52 -10.19 15.52 5.56 0.09 -10.11 16 19 C -0.13 -2.27 6.16 36.00 0.22 -2.05 16 20 S -0.14 -3.44 18.54 -107.50 -1.99 -5.43 16 21 C -0.52 -14.72 10.04 30.94 0.31 -14.41 16 22 H 0.09 2.59 8.03 -52.49 -0.42 2.16 16 23 C 0.10 2.74 5.50 -17.43 -0.10 2.65 16 24 N -0.88 -26.22 13.97 55.49 0.78 -25.45 16 25 Si 0.86 21.42 27.74 -169.99 -4.72 16.71 16 26 H -0.27 -6.62 7.11 56.52 0.40 -6.21 16 27 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 28 H -0.24 -5.84 6.73 56.52 0.38 -5.46 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.50 7.54 -51.93 -0.39 0.11 16 32 H 0.07 0.51 6.64 -51.93 -0.34 0.17 16 33 H 0.10 0.92 7.00 -51.93 -0.36 0.55 16 34 H 0.10 0.53 7.69 -51.93 -0.40 0.13 16 35 H 0.09 0.55 7.68 -51.93 -0.40 0.16 16 36 H 0.12 1.11 7.31 -51.93 -0.38 0.73 16 37 H 0.09 0.60 8.03 -51.93 -0.42 0.18 16 38 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.61 7.74 -51.93 -0.40 0.20 16 42 H 0.09 0.48 5.93 -51.93 -0.31 0.18 16 43 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 45 H 0.40 3.60 6.73 -40.82 -0.27 3.32 16 46 H 0.10 1.62 8.14 -51.92 -0.42 1.20 16 47 H 0.10 1.64 8.14 -51.91 -0.42 1.22 16 48 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 394.49 15.07 5.94 5.94 Total: -1.00 -34.23 394.49 -9.55 -43.77 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -7.88 Total: 1.62 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -1.14 Total: -6.07 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.07 Total: -39.34 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: 0.17 Total: -17.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.72 Total: 16.71 kcal Atomic # 16 Polarization: -3.44 SS G_CDS: -1.99 Total: -5.43 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -34.23 -9.55 -43.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073744027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.826 kcal (2) G-P(sol) polarization free energy of solvation -34.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds