Wall clock time and date at job start Sat Apr 11 2020 06:03:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.50104 * 2 1 4 4 C 1.53194 * 109.50045 * 239.90169 * 2 1 3 5 5 N 1.46922 * 108.77828 * 185.41489 * 4 2 1 6 6 C 1.34774 * 120.63425 * 233.63073 * 5 4 2 7 7 O 1.21288 * 119.99519 * 359.97438 * 6 5 4 8 8 C 1.50693 * 120.00526 * 179.97438 * 6 5 4 9 9 C 1.53000 * 109.47272 * 180.02562 * 8 6 5 10 10 C 1.53007 * 117.49551 * 243.74551 * 9 8 6 11 11 C 1.53003 * 117.49922 * 175.08713 * 9 8 6 12 12 C 1.46931 * 118.73954 * 53.60532 * 5 4 2 13 13 C 1.53160 * 108.76755 * 306.39511 * 12 5 4 14 14 C 1.53036 * 109.33037 * 54.64161 * 13 12 5 15 15 H 1.09005 * 109.45756 * 178.61516 * 14 13 12 16 16 N 1.46499 * 109.46017 * 58.64408 * 14 13 12 17 17 C 1.34778 * 120.00278 * 84.96841 * 16 14 13 18 18 O 1.21278 * 119.99748 * 0.02562 * 17 16 14 19 19 C 1.50697 * 120.00209 * 180.02562 * 17 16 14 20 20 S 1.80999 * 109.47181 * 180.02562 * 19 17 16 21 21 C 1.76199 * 99.99825 * 179.97438 * 20 19 17 22 22 H 1.08002 * 120.00405 * 0.02562 * 21 20 19 23 23 C 1.38803 * 119.99855 * 179.72221 * 21 20 19 24 24 N 1.31630 * 119.99849 * 180.27695 * 23 21 20 25 25 Si 1.86800 * 120.00065 * 0.28024 * 23 21 20 26 26 H 1.48498 * 109.47118 * 89.99557 * 25 23 21 27 27 H 1.48499 * 109.47134 * 210.00077 * 25 23 21 28 28 H 1.48507 * 109.46904 * 329.99899 * 25 23 21 29 29 H 1.09004 * 109.47011 * 299.93518 * 1 2 3 30 30 H 1.08998 * 109.46722 * 59.93556 * 1 2 3 31 31 H 1.09001 * 109.46911 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.58393 * 305.20002 * 4 2 1 33 33 H 1.08995 * 109.58707 * 65.62347 * 4 2 1 34 34 H 1.09005 * 109.47085 * 299.99634 * 8 6 5 35 35 H 1.08995 * 109.47347 * 59.99987 * 8 6 5 36 36 H 1.08996 * 115.55491 * 29.41145 * 9 8 6 37 37 H 1.08994 * 117.50153 * 0.02562 * 10 9 8 38 38 H 1.09000 * 117.49557 * 145.02077 * 10 9 8 39 39 H 1.08996 * 117.49968 * 214.97549 * 11 9 8 40 40 H 1.08999 * 117.49844 * 359.97438 * 11 9 8 41 41 H 1.09000 * 109.58425 * 66.18357 * 12 5 4 42 42 H 1.09000 * 109.58802 * 186.60556 * 12 5 4 43 43 H 1.09001 * 109.49788 * 294.67534 * 13 12 5 44 44 H 1.09004 * 109.47867 * 174.59715 * 13 12 5 45 45 H 0.97000 * 119.99972 * 264.97197 * 16 14 13 46 46 H 1.08999 * 109.47278 * 59.99800 * 19 17 16 47 47 H 1.09002 * 109.46837 * 300.00183 * 19 17 16 48 48 H 0.97005 * 119.99878 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0275 0.0000 4 6 2.0414 -0.7242 -1.2494 5 7 3.5046 -0.8295 -1.1693 6 6 4.2812 -0.3863 -2.1777 7 8 3.7732 0.1047 -3.1635 8 6 5.7807 -0.5008 -2.0804 9 6 6.4192 0.0721 -3.3473 10 6 7.2090 -0.8898 -4.2373 11 6 7.9463 0.1535 -3.3940 12 6 4.1053 -1.4267 0.0313 13 6 3.5708 -0.6947 1.2659 14 6 2.0408 -0.7227 1.2486 15 1 1.6584 -0.2236 2.1390 16 7 1.5783 -2.1127 1.2315 17 6 1.4497 -2.7944 2.3870 18 8 1.7164 -2.2570 3.4410 19 6 0.9745 -4.2244 2.3694 20 16 0.9062 -4.8584 4.0633 21 6 0.3367 -6.4968 3.7540 22 1 0.1451 -6.8198 2.7414 23 6 0.1403 -7.3745 4.8113 24 7 -0.2799 -8.6002 4.5797 25 14 0.4723 -6.8161 6.5627 26 1 -0.7662 -6.2348 7.1400 27 1 0.9010 -7.9793 7.3802 28 1 1.5461 -5.7903 6.5600 29 1 -0.3633 0.5128 0.8906 30 1 -0.3633 0.5148 -0.8894 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6053 -1.7220 -1.2975 33 1 1.7638 -0.1586 -2.1388 34 1 6.1322 0.0573 -1.2126 35 1 6.0589 -1.5494 -1.9751 36 1 5.8576 0.8664 -3.8390 37 1 7.2734 -1.9307 -3.9205 38 1 7.1673 -0.7280 -5.3144 39 1 8.3894 1.0011 -3.9166 40 1 8.4961 -0.2007 -2.5219 41 1 3.8376 -2.4818 0.0876 42 1 5.1896 -1.3246 -0.0132 43 1 3.9160 0.3392 1.2537 44 1 3.9337 -1.1891 2.1671 45 1 1.3647 -2.5424 0.3885 46 1 1.6651 -4.8295 1.7821 47 1 -0.0192 -4.2715 1.9238 48 1 -0.4175 -9.2135 5.3186 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073744027.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:15 Heat of formation + Delta-G solvation = -78.706760 kcal Electronic energy + Delta-G solvation = -27479.185046 eV Core-core repulsion = 23659.729583 eV Total energy + Delta-G solvation = -3819.455463 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.79468 -40.58549 -38.89900 -37.81129 -35.59807 -34.66123 -34.01604 -32.55491 -30.75008 -30.35718 -27.86082 -27.43909 -26.18379 -23.54656 -23.22538 -22.27980 -22.00249 -20.76753 -19.93356 -19.71864 -18.31533 -17.85886 -17.33011 -17.20438 -17.03565 -16.65265 -16.33981 -16.04363 -15.66314 -15.37885 -15.11342 -14.96601 -14.86358 -14.69276 -14.55898 -14.35682 -13.84472 -13.63740 -13.43222 -13.32748 -13.06286 -13.00817 -12.84178 -12.70133 -12.55157 -12.36868 -12.30600 -11.99687 -11.98336 -11.85832 -11.55366 -11.28586 -11.16203 -10.97829 -10.93951 -10.71255 -10.51448 -10.12966 -9.66223 -8.97160 -8.50465 -6.20638 1.01090 1.32524 1.47819 1.57365 1.60676 1.61230 1.92806 2.23922 2.27906 2.73317 2.87913 2.91246 3.42423 3.61696 3.70231 3.78692 3.82231 3.89776 4.01996 4.04870 4.16265 4.20129 4.24853 4.29673 4.41668 4.49934 4.52744 4.59056 4.62588 4.70625 4.73146 4.77506 4.81498 4.84494 4.95041 5.04067 5.07004 5.08819 5.11788 5.27391 5.29622 5.35560 5.50727 5.52260 5.71622 6.12738 6.35060 6.47123 6.94813 7.14717 7.22056 8.61865 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016662 B = 0.002304 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1680.093246 B =12148.758509 C =12907.670466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.093 0.907 4 C 0.112 3.888 5 N -0.609 5.609 6 C 0.515 3.485 7 O -0.583 6.583 8 C -0.105 4.105 9 C -0.157 4.157 10 C -0.186 4.186 11 C -0.166 4.166 12 C 0.108 3.892 13 C -0.142 4.142 14 C 0.151 3.849 15 H 0.077 0.923 16 N -0.705 5.705 17 C 0.542 3.458 18 O -0.557 6.557 19 C -0.114 4.114 20 S -0.171 6.171 21 C -0.529 4.529 22 H 0.061 0.939 23 C 0.044 3.956 24 N -0.918 5.918 25 Si 0.915 3.085 26 H -0.264 1.264 27 H -0.261 1.261 28 H -0.234 1.234 29 H 0.058 0.942 30 H 0.069 0.931 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.119 0.881 35 H 0.112 0.888 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.090 0.910 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.072 0.928 42 H 0.111 0.889 43 H 0.090 0.910 44 H 0.072 0.928 45 H 0.410 0.590 46 H 0.112 0.888 47 H 0.109 0.891 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.113 20.055 -15.083 28.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 H 0.112 0.888 4 C -0.010 4.010 5 N -0.341 5.341 6 C 0.305 3.695 7 O -0.463 6.463 8 C -0.144 4.144 9 C -0.175 4.175 10 C -0.223 4.223 11 C -0.203 4.203 12 C -0.014 4.014 13 C -0.182 4.182 14 C 0.047 3.953 15 H 0.095 0.905 16 N -0.360 5.360 17 C 0.327 3.673 18 O -0.434 6.434 19 C -0.265 4.265 20 S 0.055 5.945 21 C -0.676 4.676 22 H 0.079 0.921 23 C -0.162 4.162 24 N -0.556 5.556 25 Si 0.737 3.263 26 H -0.188 1.188 27 H -0.185 1.185 28 H -0.158 1.158 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.104 0.896 34 H 0.137 0.863 35 H 0.130 0.870 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.091 0.909 42 H 0.130 0.870 43 H 0.109 0.891 44 H 0.091 0.909 45 H 0.247 0.753 46 H 0.131 0.869 47 H 0.127 0.873 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.243 21.025 -13.811 28.428 hybrid contribution -0.857 -1.311 -0.895 1.804 sum 12.385 19.714 -14.706 27.537 Atomic orbital electron populations 1.21762 0.93238 1.02654 1.02672 1.21660 0.97025 1.00171 0.92798 0.88828 1.21663 0.79570 1.01165 0.98642 1.48196 1.06719 1.60653 1.18520 1.21112 0.90627 0.76164 0.81574 1.90668 1.76426 1.46564 1.32616 1.21303 0.89417 1.04389 0.99298 1.22003 0.94204 1.02925 0.98415 1.23132 1.04492 0.96564 0.98071 1.23093 0.92816 1.01459 1.02939 1.21862 0.99756 0.97240 0.82547 1.22257 0.94981 1.02619 0.98299 1.20998 0.94247 0.81198 0.98900 0.90516 1.45865 1.68241 1.13616 1.08251 1.19814 0.76518 0.86918 0.84050 1.90694 1.50622 1.70134 1.31999 1.23285 1.06112 0.96192 1.00867 1.84673 1.88053 1.12366 1.09364 1.22479 1.51014 0.97216 0.96911 0.92078 1.25590 0.93270 0.94101 1.03210 1.70023 1.45165 1.06147 1.34264 0.85855 0.80949 0.79826 0.79658 1.18840 1.18536 1.15786 0.92317 0.91157 0.92294 0.90655 0.89632 0.86304 0.86970 0.88898 0.88009 0.89174 0.88302 0.87158 0.90920 0.87039 0.89115 0.90939 0.75288 0.86949 0.87271 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 9.05 71.98 0.65 -1.33 16 2 C -0.10 -1.33 2.67 -10.71 -0.03 -1.36 16 3 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 4 C 0.11 1.66 5.42 86.36 0.47 2.12 16 5 N -0.61 -8.89 2.97 -818.97 -2.43 -11.32 16 6 C 0.51 9.21 7.70 87.66 0.67 9.89 16 7 O -0.58 -15.25 14.98 -3.05 -0.05 -15.30 16 8 C -0.10 -1.20 4.33 29.85 0.13 -1.07 16 9 C -0.16 -2.23 5.41 -10.79 -0.06 -2.29 16 10 C -0.19 -2.31 10.18 30.62 0.31 -2.00 16 11 C -0.17 -1.68 10.25 30.62 0.31 -1.37 16 12 C 0.11 1.29 6.08 86.35 0.53 1.81 16 13 C -0.14 -2.09 5.77 30.66 0.18 -1.91 16 14 C 0.15 2.62 2.21 45.02 0.10 2.72 16 15 H 0.08 1.68 7.58 -2.38 -0.02 1.66 16 16 N -0.71 -14.08 3.60 -442.41 -1.59 -15.67 16 17 C 0.54 16.47 7.81 87.66 0.68 17.16 16 18 O -0.56 -21.40 15.52 -3.02 -0.05 -21.44 16 19 C -0.11 -3.97 6.16 71.23 0.44 -3.53 16 20 S -0.17 -8.28 18.54 -56.49 -1.05 -9.33 16 21 C -0.53 -30.07 10.04 67.96 0.68 -29.39 16 22 H 0.06 3.68 8.03 -2.91 -0.02 3.65 16 23 C 0.04 2.52 5.50 84.86 0.47 2.98 16 24 N -0.92 -55.28 13.97 21.65 0.30 -54.98 16 25 Si 0.92 44.16 27.74 68.60 1.90 46.06 16 26 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 27 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.23 -11.17 6.73 99.48 0.67 -10.50 16 29 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.84 7.54 -2.39 -0.02 0.82 16 32 H 0.08 0.98 6.64 -2.38 -0.02 0.97 16 33 H 0.09 1.53 7.00 -2.39 -0.02 1.51 16 34 H 0.12 0.86 7.69 -2.38 -0.02 0.84 16 35 H 0.11 0.92 7.68 -2.39 -0.02 0.91 16 36 H 0.09 1.79 7.31 -2.39 -0.02 1.77 16 37 H 0.10 1.09 8.03 -2.39 -0.02 1.07 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 40 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.07 0.95 7.74 -2.39 -0.02 0.93 16 42 H 0.11 0.81 5.93 -2.39 -0.01 0.80 16 43 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.41 6.37 6.73 -92.71 -0.62 5.75 16 46 H 0.11 3.59 8.14 -2.39 -0.02 3.57 16 47 H 0.11 3.56 8.14 -2.39 -0.02 3.54 16 48 H 0.28 15.40 8.31 -92.70 -0.77 14.63 16 Total: -1.00 -75.27 394.49 2.87 -72.40 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: 0.30 Total: 17.15 kcal Atomic # 6 Polarization: -13.10 SS G_CDS: 5.54 Total: -7.56 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -3.72 Total: -81.98 kcal Atomic # 8 Polarization: -36.65 SS G_CDS: -0.09 Total: -36.74 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 1.90 Total: 46.06 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.05 Total: -9.33 kcal Total: -75.27 2.87 -72.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073744027.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.309 kcal (2) G-P(sol) polarization free energy of solvation -75.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds