Wall clock time and date at job start Sat Apr 11 2020 06:03:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.50700 * 120.00163 * 2 1 4 4 C 1.33000 * 119.99840 * 179.97438 * 2 1 3 5 5 C 1.47105 * 119.99865 * 180.27796 * 4 2 1 6 6 O 1.21619 * 119.99614 * 354.69137 * 5 4 2 7 7 N 1.34769 * 120.00082 * 174.70012 * 5 4 2 8 8 C 1.46923 * 120.62930 * 5.22731 * 7 5 4 9 9 C 1.53193 * 108.77745 * 126.37555 * 8 7 5 10 10 C 1.53040 * 109.31498 * 54.62875 * 9 8 7 11 11 H 1.08999 * 109.46375 * 178.61815 * 10 9 8 12 12 N 1.46500 * 109.45793 * 58.64683 * 10 9 8 13 13 C 1.34775 * 119.99970 * 84.99843 * 12 10 9 14 14 O 1.21276 * 120.00270 * 359.97438 * 13 12 10 15 15 C 1.50708 * 120.00074 * 180.02562 * 13 12 10 16 16 S 1.81002 * 109.47202 * 180.02562 * 15 13 12 17 17 C 1.76195 * 99.99985 * 179.97438 * 16 15 13 18 18 H 1.07999 * 119.99931 * 359.97438 * 17 16 15 19 19 C 1.38800 * 120.00032 * 179.97438 * 17 16 15 20 20 N 1.31632 * 119.99854 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00023 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47016 * 359.97438 * 21 19 17 23 23 H 1.48488 * 109.47373 * 120.00071 * 21 19 17 24 24 H 1.48507 * 109.46958 * 240.00409 * 21 19 17 25 25 C 1.53042 * 109.53894 * 298.64327 * 10 9 8 26 26 H 1.09002 * 109.49323 * 301.37305 * 25 10 9 27 27 C 1.52998 * 109.49591 * 181.31514 * 25 10 9 28 28 C 1.46927 * 120.62960 * 184.95098 * 7 5 4 29 29 H 1.09008 * 109.46858 * 270.00111 * 1 2 3 30 30 H 1.09004 * 109.47126 * 29.99984 * 1 2 3 31 31 H 1.08996 * 109.47295 * 150.00195 * 1 2 3 32 32 H 1.09003 * 109.46866 * 240.00216 * 3 2 1 33 33 H 1.09003 * 109.46840 * 359.97438 * 3 2 1 34 34 H 1.08995 * 109.47323 * 119.99821 * 3 2 1 35 35 H 1.07994 * 119.99873 * 359.97438 * 4 2 1 36 36 H 1.09010 * 109.58889 * 246.15684 * 8 7 5 37 37 H 1.08996 * 109.58858 * 6.44276 * 8 7 5 38 38 H 1.08994 * 109.50171 * 174.58738 * 9 8 7 39 39 H 1.09001 * 109.49146 * 294.64842 * 9 8 7 40 40 H 0.97001 * 120.00303 * 265.00335 * 12 10 9 41 41 H 1.09005 * 109.46545 * 299.99555 * 15 13 12 42 42 H 1.08992 * 109.47422 * 59.99570 * 15 13 12 43 43 H 0.96995 * 119.99514 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.47559 * 59.99302 * 27 25 10 45 45 H 1.08994 * 109.47175 * 179.97438 * 27 25 10 46 46 H 1.09003 * 109.47138 * 299.99974 * 27 25 10 47 47 H 1.08993 * 109.59018 * 353.41318 * 28 7 5 48 48 H 1.09004 * 109.58475 * 113.84296 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3051 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 3.6430 -1.1518 0.0067 6 8 4.2514 -0.1029 -0.0861 7 7 4.3164 -2.3142 0.1150 8 6 3.6004 -3.5971 0.1128 9 6 4.2048 -4.4973 -0.9694 10 6 5.7132 -4.6197 -0.7417 11 1 6.1420 -5.2795 -1.4959 12 7 5.9621 -5.1751 0.5909 13 6 5.9562 -6.5099 0.7766 14 8 5.7443 -7.2514 -0.1594 15 6 6.2116 -7.0813 2.1476 16 16 6.1390 -8.8882 2.0714 17 6 6.4641 -9.2789 3.7584 18 1 6.6327 -8.4871 4.4733 19 6 6.5035 -10.6043 4.1687 20 7 6.2975 -11.5693 3.2976 21 14 6.8475 -11.0184 5.9575 22 1 7.0421 -9.7636 6.7275 23 1 5.6988 -11.7723 6.5208 24 1 8.0757 -11.8485 6.0460 25 6 6.3605 -3.2369 -0.8464 26 1 6.1552 -2.8127 -1.8293 27 6 7.8726 -3.3648 -0.6512 28 6 5.7810 -2.3228 0.2315 29 1 -0.3633 0.0000 1.0278 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 2.8872 1.3628 -0.8900 33 1 1.5522 2.1336 -0.0005 34 1 2.8871 1.3628 0.8899 35 1 1.6319 -2.0871 0.0014 36 1 3.7051 -4.0758 1.0866 37 1 2.5449 -3.4262 -0.0987 38 1 3.7477 -5.4855 -0.9178 39 1 4.0187 -4.0612 -1.9509 40 1 6.1311 -4.5820 1.3397 41 1 7.1985 -6.7719 2.4919 42 1 5.4540 -6.7157 2.8405 43 1 6.3255 -12.4955 3.5843 44 1 8.2844 -4.0178 -1.4207 45 1 8.3332 -2.3799 -0.7263 46 1 8.0774 -3.7881 0.3322 47 1 6.1643 -1.3115 0.0958 48 1 6.0671 -2.6953 1.2151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073744153.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:22 Heat of formation + Delta-G solvation = -85.260425 kcal Electronic energy + Delta-G solvation = -27493.439894 eV Core-core repulsion = 23673.700243 eV Total energy + Delta-G solvation = -3819.739652 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.78164 -40.56176 -38.84941 -36.36142 -35.57046 -34.57730 -33.97577 -32.53954 -30.32941 -29.52843 -28.62684 -27.69504 -27.29060 -26.09764 -23.55598 -22.21428 -21.82817 -20.24221 -19.86049 -18.92083 -18.45400 -17.83837 -17.15752 -16.87350 -16.72901 -16.56199 -16.19864 -15.77117 -15.49606 -15.20133 -14.98544 -14.91828 -14.70929 -14.66463 -14.35159 -14.19904 -13.80099 -13.58281 -13.35205 -13.25262 -13.14987 -13.07475 -12.91865 -12.81643 -12.69963 -12.60065 -12.53002 -12.36753 -12.00186 -11.88627 -11.72695 -11.53239 -11.15223 -10.89191 -10.55904 -10.25212 -10.19035 -10.08434 -9.52724 -8.64343 -8.34250 -6.11152 0.41398 1.28323 1.41304 1.47971 1.58775 1.65838 2.00463 2.25737 2.27691 2.32423 3.00063 3.33077 3.45615 3.64916 3.72422 3.83427 3.91431 3.98857 4.02401 4.12911 4.21615 4.31499 4.35885 4.45910 4.53504 4.57711 4.59788 4.68964 4.70259 4.72980 4.81527 4.85389 4.90579 4.93597 5.04291 5.05125 5.08341 5.11439 5.19474 5.30286 5.43120 5.48749 5.52859 5.55793 5.66984 6.20790 6.41004 6.50993 7.07666 7.19560 7.27305 8.74991 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016005 B = 0.002278 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1749.047693 B =12286.775256 C =13024.913060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.026 4.026 3 C -0.115 4.115 4 C -0.256 4.256 5 C 0.542 3.458 6 O -0.577 6.577 7 N -0.607 5.607 8 C 0.111 3.889 9 C -0.142 4.142 10 C 0.152 3.848 11 H 0.073 0.927 12 N -0.705 5.705 13 C 0.540 3.460 14 O -0.560 6.560 15 C -0.131 4.131 16 S -0.147 6.147 17 C -0.545 4.545 18 H 0.081 0.919 19 C 0.013 3.987 20 N -0.911 5.911 21 Si 0.997 3.003 22 H -0.258 1.258 23 H -0.274 1.274 24 H -0.275 1.275 25 C -0.097 4.097 26 H 0.091 0.909 27 C -0.144 4.144 28 C 0.115 3.885 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.062 0.938 35 H 0.148 0.852 36 H 0.071 0.929 37 H 0.107 0.893 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.409 0.591 41 H 0.106 0.894 42 H 0.108 0.892 43 H 0.271 0.729 44 H 0.056 0.944 45 H 0.072 0.928 46 H 0.059 0.941 47 H 0.089 0.911 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.297 26.132 -6.233 28.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.028 4.028 3 C -0.171 4.171 4 C -0.277 4.277 5 C 0.335 3.665 6 O -0.460 6.460 7 N -0.338 5.338 8 C -0.011 4.011 9 C -0.181 4.181 10 C 0.047 3.953 11 H 0.091 0.909 12 N -0.360 5.360 13 C 0.326 3.674 14 O -0.438 6.438 15 C -0.282 4.282 16 S 0.080 5.920 17 C -0.692 4.692 18 H 0.099 0.901 19 C -0.192 4.192 20 N -0.547 5.547 21 Si 0.819 3.181 22 H -0.181 1.181 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.117 4.117 26 H 0.109 0.891 27 C -0.202 4.202 28 C -0.007 4.007 29 H 0.108 0.892 30 H 0.102 0.898 31 H 0.099 0.901 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.165 0.835 36 H 0.089 0.911 37 H 0.125 0.875 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.247 0.753 41 H 0.124 0.876 42 H 0.126 0.874 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.091 0.909 46 H 0.078 0.922 47 H 0.107 0.893 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.335 25.279 -7.867 27.756 hybrid contribution 0.731 0.117 2.137 2.261 sum -7.604 25.397 -5.731 27.123 Atomic orbital electron populations 1.21096 0.88779 1.04418 1.03940 1.22902 0.97530 0.94749 0.87632 1.20991 0.99259 0.94214 1.02674 1.22576 0.91945 1.00198 1.12934 1.18983 0.89259 0.82703 0.75546 1.90745 1.71284 1.31784 1.52170 1.48025 1.07194 1.06189 1.72431 1.21833 0.97509 0.82395 0.99383 1.22248 0.95399 1.00298 1.00174 1.20960 0.95366 0.94425 0.84553 0.90853 1.45855 1.72853 1.05274 1.11985 1.19942 0.75483 0.82736 0.89277 1.90694 1.49307 1.59849 1.43940 1.23381 1.06265 1.00677 0.97902 1.85544 1.93680 0.98288 1.14458 1.23229 1.55985 0.95601 0.94433 0.90056 1.26100 0.94213 0.95066 1.03783 1.70184 1.47516 1.00400 1.36617 0.84932 0.78001 0.78653 0.76531 1.18118 1.19929 1.20038 1.21578 0.96321 0.93183 1.00626 0.89118 1.21750 0.93248 1.02675 1.02497 1.21558 0.79314 1.01233 0.98636 0.89157 0.89793 0.90072 0.91447 0.90869 0.91915 0.83484 0.91111 0.87470 0.91260 0.89533 0.75312 0.87579 0.87383 0.92035 0.92478 0.90922 0.92210 0.89307 0.90607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.94 9.98 71.24 0.71 -0.22 16 2 C -0.03 -0.36 6.11 -17.62 -0.11 -0.47 16 3 C -0.12 -1.84 8.33 71.24 0.59 -1.24 16 4 C -0.26 -4.00 8.94 23.43 0.21 -3.79 16 5 C 0.54 11.21 7.60 86.57 0.66 11.87 16 6 O -0.58 -15.18 12.52 -4.09 -0.05 -15.23 16 7 N -0.61 -10.72 2.98 -824.02 -2.45 -13.17 16 8 C 0.11 1.75 6.06 86.36 0.52 2.28 16 9 C -0.14 -2.66 5.77 30.67 0.18 -2.48 16 10 C 0.15 3.14 2.21 45.02 0.10 3.24 16 11 H 0.07 1.88 7.58 -2.39 -0.02 1.86 16 12 N -0.71 -16.19 3.60 -442.40 -1.59 -17.78 16 13 C 0.54 18.46 7.81 87.66 0.68 19.14 16 14 O -0.56 -24.30 15.52 -3.02 -0.05 -24.35 16 15 C -0.13 -4.96 6.16 71.24 0.44 -4.52 16 16 S -0.15 -7.95 20.57 -56.49 -1.16 -9.11 16 17 C -0.54 -30.61 9.50 67.95 0.65 -29.97 16 18 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 19 C 0.01 0.74 5.49 84.86 0.47 1.21 16 20 N -0.91 -55.35 13.22 21.65 0.29 -55.06 16 21 Si 1.00 43.19 29.55 68.60 2.03 45.22 16 22 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 23 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 24 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 25 C -0.10 -1.57 2.66 -10.86 -0.03 -1.60 16 26 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 27 C -0.14 -2.21 9.05 71.98 0.65 -1.56 16 28 C 0.12 1.92 5.40 86.22 0.47 2.38 16 29 H 0.09 0.53 8.14 -2.38 -0.02 0.51 16 30 H 0.08 0.46 8.05 -2.38 -0.02 0.44 16 31 H 0.08 0.48 8.07 -2.39 -0.02 0.46 16 32 H 0.07 1.33 7.10 -2.39 -0.02 1.31 16 33 H 0.07 0.81 7.94 -2.39 -0.02 0.79 16 34 H 0.06 1.22 7.36 -2.39 -0.02 1.20 16 35 H 0.15 1.65 5.91 -2.91 -0.02 1.64 16 36 H 0.07 1.18 7.74 -2.38 -0.02 1.16 16 37 H 0.11 1.30 5.37 -2.39 -0.01 1.29 16 38 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.41 7.32 6.74 -92.71 -0.62 6.70 16 41 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 42 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 43 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 44 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.06 0.94 7.54 -2.39 -0.02 0.92 16 47 H 0.09 1.68 6.99 -2.39 -0.02 1.67 16 48 H 0.08 1.10 6.64 -2.38 -0.02 1.09 16 Total: -1.00 -76.83 394.63 3.53 -73.30 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.34 Total: 21.92 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: 6.19 Total: -5.73 kcal Atomic # 7 Polarization: -82.26 SS G_CDS: -3.76 Total: -86.02 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.10 Total: -39.58 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: -7.95 SS G_CDS: -1.16 Total: -9.11 kcal Total: -76.83 3.53 -73.30 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073744153.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.961 kcal (2) G-P(sol) polarization free energy of solvation -76.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds