Wall clock time and date at job start Sat Apr 11 2020 06:03:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50706 * 119.99715 * 2 1 4 4 C 1.32994 * 120.00038 * 179.97438 * 2 1 3 5 5 C 1.47098 * 120.00054 * 352.68917 * 4 2 1 6 6 O 1.21607 * 120.00191 * 352.67522 * 5 4 2 7 7 N 1.34779 * 119.99903 * 172.95779 * 5 4 2 8 8 C 1.46928 * 120.62781 * 4.64822 * 7 5 4 9 9 C 1.52766 * 109.00361 * 233.58125 * 8 7 5 10 10 C 1.53035 * 109.38619 * 305.58701 * 9 8 7 11 11 H 1.09005 * 109.46057 * 181.25632 * 10 9 8 12 12 N 1.46490 * 109.44901 * 301.22813 * 10 9 8 13 13 C 1.34779 * 120.00374 * 275.05538 * 12 10 9 14 14 O 1.21286 * 119.99363 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00412 * 180.02562 * 13 12 10 16 16 S 1.81000 * 109.46947 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99774 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00281 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00095 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00066 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99622 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47422 * 90.00136 * 21 19 17 23 23 H 1.48504 * 109.47211 * 209.99984 * 21 19 17 24 24 H 1.48501 * 109.47323 * 329.99792 * 21 19 17 25 25 C 1.53042 * 109.53466 * 61.24054 * 10 9 8 26 26 H 1.09007 * 109.52434 * 58.60477 * 25 10 9 27 27 C 1.53007 * 109.49660 * 178.68254 * 25 10 9 28 28 C 1.46921 * 120.63392 * 184.92518 * 7 5 4 29 29 H 1.09003 * 109.47227 * 264.44839 * 1 2 3 30 30 H 1.08994 * 109.47093 * 24.45069 * 1 2 3 31 31 H 1.09004 * 109.46879 * 144.45217 * 1 2 3 32 32 H 1.08999 * 109.46873 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46676 * 299.99917 * 3 2 1 34 34 H 1.08996 * 109.47054 * 60.00102 * 3 2 1 35 35 H 1.08000 * 119.99671 * 172.68477 * 4 2 1 36 36 H 1.09000 * 109.59026 * 353.41588 * 8 7 5 37 37 H 1.08999 * 109.59123 * 113.84430 * 8 7 5 38 38 H 1.09001 * 109.56049 * 185.54910 * 9 8 7 39 39 H 1.09004 * 109.38284 * 65.52141 * 9 8 7 40 40 H 0.97005 * 120.00479 * 95.06420 * 12 10 9 41 41 H 1.09003 * 109.46712 * 299.99788 * 15 13 12 42 42 H 1.08999 * 109.47064 * 60.00241 * 15 13 12 43 43 H 0.97004 * 119.99735 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.46878 * 179.84215 * 27 25 10 45 45 H 1.09006 * 109.47079 * 299.83680 * 27 25 10 46 46 H 1.09000 * 109.47002 * 59.83993 * 27 25 10 47 47 H 1.08999 * 109.58888 * 246.16198 * 28 7 5 48 48 H 1.09005 * 109.58482 * 6.43492 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4455 -2.4204 0.1632 6 8 0.2591 -2.4119 0.4298 7 7 2.0961 -3.5924 0.0223 8 6 3.5493 -3.6207 -0.1928 9 6 3.8509 -4.4428 -1.4445 10 6 3.2078 -5.8251 -1.3115 11 1 3.4410 -6.4206 -2.1943 12 7 3.7323 -6.4944 -0.1187 13 6 4.8904 -7.1807 -0.1853 14 8 5.4985 -7.2437 -1.2328 15 6 5.4297 -7.8697 1.0417 16 16 6.9865 -8.6977 0.6334 17 6 7.3810 -9.3978 2.2015 18 1 6.7218 -9.2438 3.0430 19 6 8.5386 -10.1483 2.3551 20 7 8.8330 -10.6717 3.5263 21 14 9.6785 -10.4153 0.8995 22 1 10.6872 -9.3264 0.8544 23 1 10.3677 -11.7228 1.0438 24 1 8.8868 -10.4091 -0.3569 25 6 1.6902 -5.6735 -1.1853 26 1 1.3019 -5.1535 -2.0611 27 6 1.0452 -7.0574 -1.0854 28 6 1.3648 -4.8656 0.0749 29 1 -0.3634 -0.0994 1.0229 30 1 -0.3633 0.9355 -0.4253 31 1 -0.3633 -0.8362 -0.5975 32 1 3.3321 1.1060 0.0005 33 1 1.9971 1.8767 -0.8900 34 1 1.9972 1.8767 0.8900 35 1 3.2454 -1.1555 -0.1186 36 1 3.9187 -2.6041 -0.3272 37 1 4.0373 -4.0782 0.6678 38 1 4.9294 -4.5527 -1.5578 39 1 3.4433 -3.9343 -2.3183 40 1 3.2461 -6.4438 0.7192 41 1 5.6053 -7.1321 1.8248 42 1 4.7068 -8.6065 1.3919 43 1 9.6422 -11.1958 3.6337 44 1 -0.0354 -6.9487 -0.9926 45 1 1.2769 -7.6318 -1.9823 46 1 1.4346 -7.5773 -0.2101 47 1 1.6709 -5.4266 0.9579 48 1 0.2934 -4.6700 0.1197 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073744154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:27 Heat of formation + Delta-G solvation = -62.046926 kcal Electronic energy + Delta-G solvation = -27546.178791 eV Core-core repulsion = 23727.445753 eV Total energy + Delta-G solvation = -3818.733039 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.93677 -39.55312 -37.86003 -35.73212 -34.68648 -33.06929 -32.45700 -31.58643 -29.07832 -28.90595 -28.11141 -26.61034 -25.65800 -25.30735 -22.74532 -21.37594 -20.86444 -19.35683 -18.26396 -18.01202 -17.61897 -16.55319 -16.15657 -16.01894 -15.55673 -15.09654 -14.93576 -14.78149 -14.49115 -14.28476 -14.25656 -14.13972 -13.62798 -13.49077 -13.38406 -13.06856 -12.81377 -12.81024 -12.61772 -12.51621 -12.27168 -12.06243 -12.00649 -11.84040 -11.77350 -11.30671 -11.28209 -11.09078 -11.02588 -10.81931 -10.57828 -9.87674 -9.78880 -9.54611 -9.50736 -9.07256 -9.01141 -8.77084 -8.52529 -6.93980 -6.30720 -4.02591 1.04547 2.70409 2.75744 2.93474 3.01071 3.28564 3.32246 3.48410 3.63531 4.16713 4.31065 4.33159 4.40531 4.52088 4.55304 4.70427 4.71270 4.80929 4.90094 5.01822 5.07394 5.08329 5.08373 5.12509 5.25974 5.31242 5.32083 5.41100 5.44837 5.49335 5.52084 5.56120 5.69441 5.73118 5.74303 5.77430 5.85977 5.86639 5.98322 5.98800 6.15109 6.17164 6.30957 6.53356 7.15598 7.56649 7.92291 7.95932 8.39966 8.45781 9.15375 10.78505 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.002301 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.912024 B =12164.466237 C =12762.743362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.031 4.031 3 C -0.128 4.128 4 C -0.240 4.240 5 C 0.550 3.450 6 O -0.544 6.544 7 N -0.609 5.609 8 C 0.107 3.893 9 C -0.148 4.148 10 C 0.153 3.847 11 H 0.093 0.907 12 N -0.730 5.730 13 C 0.533 3.467 14 O -0.518 6.518 15 C -0.125 4.125 16 S -0.141 6.141 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.111 4.111 26 H 0.087 0.913 27 C -0.146 4.146 28 C 0.116 3.884 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.129 0.871 36 H 0.088 0.912 37 H 0.073 0.927 38 H 0.087 0.913 39 H 0.075 0.925 40 H 0.397 0.603 41 H 0.095 0.905 42 H 0.096 0.904 43 H 0.271 0.729 44 H 0.059 0.941 45 H 0.062 0.938 46 H 0.061 0.939 47 H 0.066 0.934 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.190 20.564 -8.842 28.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.033 4.033 3 C -0.184 4.184 4 C -0.261 4.261 5 C 0.342 3.658 6 O -0.424 6.424 7 N -0.342 5.342 8 C -0.016 4.016 9 C -0.187 4.187 10 C 0.047 3.953 11 H 0.111 0.889 12 N -0.385 5.385 13 C 0.319 3.681 14 O -0.393 6.393 15 C -0.276 4.276 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.114 4.114 20 N -0.516 5.516 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.200 1.200 24 H -0.159 1.159 25 C -0.131 4.131 26 H 0.105 0.895 27 C -0.204 4.204 28 C -0.007 4.007 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.147 0.853 36 H 0.107 0.893 37 H 0.091 0.909 38 H 0.105 0.895 39 H 0.093 0.907 40 H 0.232 0.768 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.080 0.920 47 H 0.084 0.916 48 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -16.663 20.333 -10.331 28.246 hybrid contribution -0.015 -0.242 1.284 1.307 sum -16.678 20.091 -9.047 27.634 Atomic orbital electron populations 1.21121 0.90919 1.02335 1.03645 1.22592 0.96886 0.94514 0.89298 1.21025 0.99960 0.94467 1.02976 1.22505 1.00426 0.91920 1.11204 1.18544 0.86546 0.84074 0.76647 1.90744 1.15677 1.87290 1.48722 1.47991 1.08403 1.05792 1.71965 1.21737 0.79745 1.01533 0.98573 1.22255 1.02749 0.95756 0.97934 1.20859 0.91706 0.92904 0.89803 0.88915 1.46107 1.24777 1.54561 1.13100 1.20267 0.80056 0.77690 0.90123 1.90698 1.57604 1.60028 1.30935 1.23285 1.03138 1.02753 0.98388 1.84775 1.22523 1.65463 1.18689 1.22317 1.12200 1.37876 0.94533 0.89414 1.24722 0.96763 0.93844 0.96032 1.69938 1.25766 1.33191 1.22754 0.86731 0.82192 0.78566 0.84320 1.19227 1.19957 1.15932 1.21778 0.94833 0.97257 0.99222 0.89471 1.21764 1.00394 0.95224 1.02972 1.21627 0.98536 0.83443 0.97109 0.90282 0.92694 0.89420 0.91301 0.90644 0.90298 0.85290 0.89343 0.90876 0.89494 0.90684 0.76802 0.88628 0.88553 0.91935 0.92205 0.91880 0.91982 0.91579 0.88588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.02 8.47 36.01 0.30 -0.71 16 2 C -0.03 -0.24 6.11 -101.16 -0.62 -0.86 16 3 C -0.13 -0.63 10.10 36.01 0.36 -0.27 16 4 C -0.24 -2.03 8.94 -37.81 -0.34 -2.37 16 5 C 0.55 5.87 7.47 -12.67 -0.09 5.78 16 6 O -0.54 -7.16 12.76 5.27 0.07 -7.09 16 7 N -0.61 -5.66 2.98 -174.43 -0.52 -6.18 16 8 C 0.11 0.90 6.07 -3.93 -0.02 0.87 16 9 C -0.15 -1.36 5.75 -26.83 -0.15 -1.51 16 10 C 0.15 1.54 2.21 -67.90 -0.15 1.39 16 11 H 0.09 1.11 7.58 -51.93 -0.39 0.72 16 12 N -0.73 -8.34 3.60 -53.77 -0.19 -8.54 16 13 C 0.53 8.70 7.81 -10.98 -0.09 8.61 16 14 O -0.52 -10.37 15.53 5.55 0.09 -10.28 16 15 C -0.12 -2.31 6.16 36.00 0.22 -2.09 16 16 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 17 C -0.52 -14.82 10.04 30.94 0.31 -14.51 16 18 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 19 C 0.10 2.76 5.50 -17.43 -0.10 2.66 16 20 N -0.88 -26.36 13.97 55.49 0.78 -25.59 16 21 Si 0.86 21.55 27.74 -169.99 -4.71 16.84 16 22 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 23 H -0.27 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 25 C -0.11 -0.91 2.67 -90.50 -0.24 -1.15 16 26 H 0.09 0.71 8.14 -51.92 -0.42 0.28 16 27 C -0.15 -1.15 9.06 37.16 0.34 -0.81 16 28 C 0.12 1.01 5.41 -3.72 -0.02 0.99 16 29 H 0.08 0.71 8.02 -51.93 -0.42 0.29 16 30 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 31 H 0.09 0.89 6.19 -51.93 -0.32 0.57 16 32 H 0.07 0.30 7.82 -51.93 -0.41 -0.10 16 33 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.13 0.86 5.71 -52.49 -0.30 0.56 16 36 H 0.09 0.61 5.31 -51.93 -0.28 0.34 16 37 H 0.07 0.66 7.74 -51.93 -0.40 0.26 16 38 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.40 3.79 6.73 -40.82 -0.27 3.51 16 41 H 0.10 1.65 8.14 -51.91 -0.42 1.22 16 42 H 0.10 1.67 8.14 -51.92 -0.42 1.25 16 43 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 44 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 45 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.06 0.52 7.53 -51.93 -0.39 0.13 16 47 H 0.07 0.54 6.64 -51.93 -0.34 0.20 16 48 H 0.10 0.93 7.03 -51.93 -0.37 0.57 16 LS Contribution 391.83 15.07 5.90 5.90 Total: -1.00 -34.12 391.83 -8.57 -42.69 By element: Atomic # 1 Polarization: 9.40 SS G_CDS: -7.69 Total: 1.70 kcal Atomic # 6 Polarization: -3.70 SS G_CDS: -0.28 Total: -3.99 kcal Atomic # 7 Polarization: -40.37 SS G_CDS: 0.06 Total: -40.31 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: 0.15 Total: -17.37 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.12 -8.57 -42.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073744154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.357 kcal (2) G-P(sol) polarization free energy of solvation -34.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds