Wall clock time and date at job start Sat Apr 11 2020 06:03:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.50706 * 119.99715 * 2 1 4 4 C 1.32994 * 120.00038 * 179.97438 * 2 1 3 5 5 C 1.47098 * 120.00054 * 352.68917 * 4 2 1 6 6 O 1.21607 * 120.00191 * 352.67522 * 5 4 2 7 7 N 1.34779 * 119.99903 * 172.95779 * 5 4 2 8 8 C 1.46928 * 120.62781 * 4.64822 * 7 5 4 9 9 C 1.52766 * 109.00361 * 233.58125 * 8 7 5 10 10 C 1.53035 * 109.38619 * 305.58701 * 9 8 7 11 11 H 1.09005 * 109.46057 * 181.25632 * 10 9 8 12 12 N 1.46490 * 109.44901 * 301.22813 * 10 9 8 13 13 C 1.34779 * 120.00374 * 275.05538 * 12 10 9 14 14 O 1.21286 * 119.99363 * 0.02562 * 13 12 10 15 15 C 1.50699 * 120.00412 * 180.02562 * 13 12 10 16 16 S 1.81000 * 109.46947 * 180.02562 * 15 13 12 17 17 C 1.76202 * 99.99774 * 179.97438 * 16 15 13 18 18 H 1.07999 * 120.00281 * 0.02562 * 17 16 15 19 19 C 1.38805 * 120.00095 * 179.97438 * 17 16 15 20 20 N 1.31625 * 120.00066 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99622 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47422 * 90.00136 * 21 19 17 23 23 H 1.48504 * 109.47211 * 209.99984 * 21 19 17 24 24 H 1.48501 * 109.47323 * 329.99792 * 21 19 17 25 25 C 1.53042 * 109.53466 * 61.24054 * 10 9 8 26 26 H 1.09007 * 109.52434 * 58.60477 * 25 10 9 27 27 C 1.53007 * 109.49660 * 178.68254 * 25 10 9 28 28 C 1.46921 * 120.63392 * 184.92518 * 7 5 4 29 29 H 1.09003 * 109.47227 * 264.44839 * 1 2 3 30 30 H 1.08994 * 109.47093 * 24.45069 * 1 2 3 31 31 H 1.09004 * 109.46879 * 144.45217 * 1 2 3 32 32 H 1.08999 * 109.46873 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46676 * 299.99917 * 3 2 1 34 34 H 1.08996 * 109.47054 * 60.00102 * 3 2 1 35 35 H 1.08000 * 119.99671 * 172.68477 * 4 2 1 36 36 H 1.09000 * 109.59026 * 353.41588 * 8 7 5 37 37 H 1.08999 * 109.59123 * 113.84430 * 8 7 5 38 38 H 1.09001 * 109.56049 * 185.54910 * 9 8 7 39 39 H 1.09004 * 109.38284 * 65.52141 * 9 8 7 40 40 H 0.97005 * 120.00479 * 95.06420 * 12 10 9 41 41 H 1.09003 * 109.46712 * 299.99788 * 15 13 12 42 42 H 1.08999 * 109.47064 * 60.00241 * 15 13 12 43 43 H 0.97004 * 119.99735 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.46878 * 179.84215 * 27 25 10 45 45 H 1.09006 * 109.47079 * 299.83680 * 27 25 10 46 46 H 1.09000 * 109.47002 * 59.83993 * 27 25 10 47 47 H 1.08999 * 109.58888 * 246.16198 * 28 7 5 48 48 H 1.09005 * 109.58482 * 6.43492 * 28 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2605 1.3052 0.0000 4 6 2.1720 -1.1518 0.0005 5 6 1.4455 -2.4204 0.1632 6 8 0.2591 -2.4119 0.4298 7 7 2.0961 -3.5924 0.0223 8 6 3.5493 -3.6207 -0.1928 9 6 3.8509 -4.4428 -1.4445 10 6 3.2078 -5.8251 -1.3115 11 1 3.4410 -6.4206 -2.1943 12 7 3.7323 -6.4944 -0.1187 13 6 4.8904 -7.1807 -0.1853 14 8 5.4985 -7.2437 -1.2328 15 6 5.4297 -7.8697 1.0417 16 16 6.9865 -8.6977 0.6334 17 6 7.3810 -9.3978 2.2015 18 1 6.7218 -9.2438 3.0430 19 6 8.5386 -10.1483 2.3551 20 7 8.8330 -10.6717 3.5263 21 14 9.6785 -10.4153 0.8995 22 1 10.6872 -9.3264 0.8544 23 1 10.3677 -11.7228 1.0438 24 1 8.8868 -10.4091 -0.3569 25 6 1.6902 -5.6735 -1.1853 26 1 1.3019 -5.1535 -2.0611 27 6 1.0452 -7.0574 -1.0854 28 6 1.3648 -4.8656 0.0749 29 1 -0.3634 -0.0994 1.0229 30 1 -0.3633 0.9355 -0.4253 31 1 -0.3633 -0.8362 -0.5975 32 1 3.3321 1.1060 0.0005 33 1 1.9971 1.8767 -0.8900 34 1 1.9972 1.8767 0.8900 35 1 3.2454 -1.1555 -0.1186 36 1 3.9187 -2.6041 -0.3272 37 1 4.0373 -4.0782 0.6678 38 1 4.9294 -4.5527 -1.5578 39 1 3.4433 -3.9343 -2.3183 40 1 3.2461 -6.4438 0.7192 41 1 5.6053 -7.1321 1.8248 42 1 4.7068 -8.6065 1.3919 43 1 9.6422 -11.1958 3.6337 44 1 -0.0354 -6.9487 -0.9926 45 1 1.2769 -7.6318 -1.9823 46 1 1.4346 -7.5773 -0.2101 47 1 1.6709 -5.4266 0.9579 48 1 0.2934 -4.6700 0.1197 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073744154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:26 Heat of formation + Delta-G solvation = -83.301988 kcal Electronic energy + Delta-G solvation = -27547.100480 eV Core-core repulsion = 23727.445753 eV Total energy + Delta-G solvation = -3819.654727 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.79720 -40.59741 -38.87174 -36.36301 -35.58651 -34.66598 -33.97776 -32.57321 -30.40060 -29.52475 -28.64181 -27.86381 -27.30904 -26.10828 -23.55902 -22.24513 -21.84383 -20.23568 -19.90999 -18.94732 -18.47318 -17.89958 -17.23538 -17.03834 -16.74487 -16.60815 -16.11340 -15.75449 -15.51774 -15.25578 -15.02949 -14.95215 -14.84144 -14.68329 -14.62869 -14.13383 -13.79248 -13.65031 -13.33517 -13.33280 -13.23177 -13.11268 -13.00950 -12.82661 -12.70369 -12.65362 -12.53340 -12.37281 -11.99726 -11.87205 -11.85984 -11.55620 -11.16365 -10.94719 -10.57066 -10.52211 -10.18205 -10.09093 -9.52823 -8.97700 -8.50830 -6.21087 0.40280 1.00447 1.32002 1.47556 1.57052 1.60221 1.99893 2.23270 2.26511 2.28526 2.72819 2.87492 3.45596 3.65204 3.71282 3.82370 3.88427 3.91941 4.02840 4.14035 4.20982 4.24339 4.36222 4.45170 4.49388 4.55229 4.59321 4.67803 4.70582 4.73659 4.81173 4.84949 4.90873 4.93208 5.04033 5.04149 5.08161 5.11632 5.19667 5.30622 5.49535 5.51267 5.56561 5.66998 5.71297 6.12337 6.40212 6.46791 6.94387 7.19026 7.21073 8.61566 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018369 B = 0.002301 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.912024 B =12164.466237 C =12762.743362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.026 4.026 3 C -0.126 4.126 4 C -0.255 4.255 5 C 0.542 3.458 6 O -0.577 6.577 7 N -0.607 5.607 8 C 0.109 3.891 9 C -0.141 4.141 10 C 0.152 3.848 11 H 0.078 0.922 12 N -0.705 5.705 13 C 0.541 3.459 14 O -0.557 6.557 15 C -0.113 4.113 16 S -0.171 6.171 17 C -0.529 4.529 18 H 0.061 0.939 19 C 0.044 3.956 20 N -0.918 5.918 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.261 1.261 24 H -0.236 1.236 25 C -0.097 4.097 26 H 0.093 0.907 27 C -0.145 4.145 28 C 0.115 3.885 29 H 0.067 0.933 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.149 0.851 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.071 0.929 39 H 0.088 0.912 40 H 0.409 0.591 41 H 0.111 0.889 42 H 0.110 0.890 43 H 0.276 0.724 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.058 0.942 47 H 0.073 0.927 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.563 22.306 -9.895 30.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.028 4.028 3 C -0.182 4.182 4 C -0.276 4.276 5 C 0.335 3.665 6 O -0.460 6.460 7 N -0.338 5.338 8 C -0.013 4.013 9 C -0.181 4.181 10 C 0.047 3.953 11 H 0.096 0.904 12 N -0.360 5.360 13 C 0.327 3.673 14 O -0.434 6.434 15 C -0.264 4.264 16 S 0.056 5.944 17 C -0.677 4.677 18 H 0.079 0.921 19 C -0.162 4.162 20 N -0.556 5.556 21 Si 0.737 3.263 22 H -0.186 1.186 23 H -0.185 1.185 24 H -0.159 1.159 25 C -0.116 4.116 26 H 0.112 0.888 27 C -0.202 4.202 28 C -0.008 4.008 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.107 0.893 34 H 0.106 0.894 35 H 0.166 0.834 36 H 0.126 0.874 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.107 0.893 40 H 0.247 0.753 41 H 0.129 0.871 42 H 0.128 0.872 43 H 0.086 0.914 44 H 0.090 0.910 45 H 0.077 0.923 46 H 0.077 0.923 47 H 0.091 0.909 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -17.064 22.087 -11.366 30.137 hybrid contribution -0.087 -0.684 1.654 1.792 sum -17.151 21.403 -9.713 29.096 Atomic orbital electron populations 1.21064 0.91729 1.02475 1.02664 1.22881 0.96607 0.95645 0.87696 1.21083 1.00111 0.93048 1.03968 1.22605 1.01274 0.91098 1.12590 1.18986 0.86331 0.85023 0.76147 1.90733 1.17086 1.87773 1.50367 1.48034 1.08701 1.05677 1.71432 1.21775 0.79134 1.02542 0.97851 1.22181 1.01679 0.95194 0.99018 1.20988 0.92956 0.93045 0.88287 0.90422 1.45867 1.22972 1.52802 1.14327 1.19824 0.80995 0.77898 0.88606 1.90693 1.59082 1.61777 1.31885 1.23283 0.99991 1.03138 1.00030 1.84666 1.26826 1.66259 1.16669 1.22478 1.11794 1.37856 0.95527 0.92100 1.25590 0.98338 0.93712 0.98521 1.70021 1.26721 1.34200 1.24639 0.85851 0.80274 0.79109 0.81030 1.18632 1.18547 1.15949 1.21662 0.93171 0.97514 0.99286 0.88826 1.21759 1.01165 0.94723 1.02601 1.21645 0.98157 0.83477 0.97532 0.91417 0.90667 0.91574 0.90394 0.89328 0.89407 0.83387 0.87436 0.91256 0.90996 0.89325 0.75313 0.87070 0.87187 0.91418 0.91042 0.92253 0.92319 0.90881 0.89433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.92 8.47 71.24 0.60 -1.31 16 2 C -0.03 -0.36 6.11 -17.61 -0.11 -0.46 16 3 C -0.13 -0.90 10.10 71.24 0.72 -0.18 16 4 C -0.26 -3.86 8.94 23.43 0.21 -3.65 16 5 C 0.54 10.99 7.47 86.57 0.65 11.63 16 6 O -0.58 -15.10 12.76 -4.05 -0.05 -15.15 16 7 N -0.61 -10.30 2.98 -824.02 -2.45 -12.76 16 8 C 0.11 1.60 6.07 86.22 0.52 2.13 16 9 C -0.14 -2.35 5.75 30.53 0.18 -2.17 16 10 C 0.15 2.82 2.21 45.02 0.10 2.92 16 11 H 0.08 1.77 7.58 -2.38 -0.02 1.75 16 12 N -0.71 -14.92 3.60 -442.42 -1.59 -16.51 16 13 C 0.54 16.99 7.81 87.66 0.68 17.67 16 14 O -0.56 -21.86 15.53 -3.05 -0.05 -21.91 16 15 C -0.11 -4.06 6.16 71.24 0.44 -3.62 16 16 S -0.17 -8.37 18.55 -56.49 -1.05 -9.42 16 17 C -0.53 -30.36 10.04 67.96 0.68 -29.68 16 18 H 0.06 3.70 8.03 -2.91 -0.02 3.67 16 19 C 0.04 2.54 5.50 84.86 0.47 3.01 16 20 N -0.92 -55.58 13.97 21.65 0.30 -55.28 16 21 Si 0.92 44.48 27.74 68.60 1.90 46.38 16 22 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.26 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.24 -11.38 6.74 99.48 0.67 -10.71 16 25 C -0.10 -1.42 2.67 -10.72 -0.03 -1.45 16 26 H 0.09 1.33 8.14 -2.38 -0.02 1.31 16 27 C -0.14 -2.04 9.06 71.98 0.65 -1.39 16 28 C 0.11 1.83 5.41 86.36 0.47 2.30 16 29 H 0.07 1.20 8.02 -2.39 -0.02 1.18 16 30 H 0.07 0.82 8.09 -2.39 -0.02 0.80 16 31 H 0.07 1.34 6.19 -2.39 -0.01 1.32 16 32 H 0.08 0.44 7.82 -2.39 -0.02 0.42 16 33 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 35 H 0.15 1.57 5.71 -2.91 -0.02 1.55 16 36 H 0.11 1.19 5.31 -2.39 -0.01 1.18 16 37 H 0.07 1.10 7.74 -2.39 -0.02 1.08 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.41 6.90 6.73 -92.70 -0.62 6.28 16 41 H 0.11 3.66 8.14 -2.39 -0.02 3.64 16 42 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 43 H 0.28 15.49 8.31 -92.71 -0.77 14.71 16 44 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 46 H 0.06 0.87 7.53 -2.39 -0.02 0.85 16 47 H 0.07 1.06 6.64 -2.39 -0.02 1.04 16 48 H 0.09 1.62 7.03 -2.38 -0.02 1.60 16 Total: -1.00 -74.69 391.83 3.55 -71.14 By element: Atomic # 1 Polarization: 17.47 SS G_CDS: 0.30 Total: 17.77 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 6.23 Total: -4.26 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -3.74 Total: -84.55 kcal Atomic # 8 Polarization: -36.96 SS G_CDS: -0.10 Total: -37.06 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.90 Total: 46.38 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.05 Total: -9.42 kcal Total: -74.69 3.55 -71.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073744154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.164 kcal (2) G-P(sol) polarization free energy of solvation -74.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.138 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds