Wall clock time and date at job start Sat Apr 11 2020 06:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.49874 * 2 1 4 4 C 1.53197 * 109.49593 * 239.93558 * 2 1 3 5 5 N 1.46926 * 108.89257 * 185.33715 * 4 2 1 6 6 C 1.34770 * 120.63524 * 233.67833 * 5 4 2 7 7 O 1.21290 * 119.99686 * 355.52786 * 6 5 4 8 8 C 1.50698 * 120.00306 * 175.52556 * 6 5 4 9 9 C 1.52999 * 115.54947 * 68.03336 * 8 6 5 10 10 C 1.52993 * 117.50142 * 282.35964 * 8 6 5 11 11 C 1.53000 * 117.49883 * 213.69869 * 8 6 5 12 12 C 1.47214 * 118.55345 * 53.54047 * 5 4 2 13 13 C 1.53186 * 108.85401 * 306.47598 * 12 5 4 14 14 C 1.53040 * 109.50256 * 120.09765 * 2 1 3 15 15 H 1.08993 * 109.45981 * 61.30507 * 14 2 1 16 16 N 1.46502 * 109.45681 * 301.33752 * 14 2 1 17 17 C 1.34778 * 119.99717 * 155.00030 * 16 14 2 18 18 O 1.21272 * 120.00313 * 359.97438 * 17 16 14 19 19 C 1.50703 * 119.99694 * 179.97438 * 17 16 14 20 20 S 1.80998 * 109.47138 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99958 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00187 * 359.97438 * 21 20 19 23 23 C 1.38804 * 119.99616 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99370 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00271 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46949 * 89.99940 * 25 23 21 27 27 H 1.48500 * 109.47349 * 209.99901 * 25 23 21 28 28 H 1.48497 * 109.47330 * 329.99788 * 25 23 21 29 29 H 1.08996 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46805 * 300.06123 * 1 2 3 31 31 H 1.08998 * 109.47672 * 60.06421 * 1 2 3 32 32 H 1.08997 * 109.58607 * 305.19561 * 4 2 1 33 33 H 1.09002 * 109.58718 * 65.48243 * 4 2 1 34 34 H 1.09005 * 109.47357 * 54.41268 * 9 8 6 35 35 H 1.09003 * 109.47261 * 174.41289 * 9 8 6 36 36 H 1.09002 * 109.46923 * 294.41564 * 9 8 6 37 37 H 1.09002 * 117.50166 * 0.02562 * 10 8 6 38 38 H 1.09006 * 117.50339 * 145.01833 * 10 8 6 39 39 H 1.09002 * 117.49776 * 214.97564 * 11 8 6 40 40 H 1.09003 * 117.50217 * 359.97438 * 11 8 6 41 41 H 1.08994 * 109.53347 * 186.67132 * 12 5 4 42 42 H 1.09000 * 109.67330 * 66.36697 * 12 5 4 43 43 H 1.08995 * 109.50084 * 294.69803 * 13 12 5 44 44 H 1.09001 * 109.52619 * 174.61829 * 13 12 5 45 45 H 0.97000 * 120.00309 * 334.99360 * 16 14 2 46 46 H 1.09002 * 109.47162 * 299.99974 * 19 17 16 47 47 H 1.09000 * 109.47112 * 59.99824 * 19 17 16 48 48 H 0.97003 * 119.99334 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5047 -0.8286 -1.1734 6 6 4.2789 -0.3842 -2.1831 7 8 3.7676 0.0336 -3.2006 8 6 5.7796 -0.4062 -2.0480 9 6 6.4187 -1.7958 -2.0133 10 6 6.4290 0.6914 -1.2028 11 6 6.5666 0.7165 -2.7271 12 6 4.1053 -1.4266 0.0303 13 6 3.5710 -0.6953 1.2657 14 6 2.0409 -0.7234 1.2481 15 1 1.6970 -1.7576 1.2347 16 7 1.5266 -0.0536 2.4452 17 6 1.3987 -0.7393 3.5985 18 8 1.7088 -1.9107 3.6452 19 6 0.8702 -0.0501 4.8301 20 16 0.8163 -1.2272 6.2040 21 6 0.1808 -0.1854 7.4748 22 1 -0.0448 0.8492 7.2625 23 6 -0.0299 -0.6944 8.7489 24 7 -0.5042 0.0842 9.6984 25 14 0.3596 -2.4840 9.1159 26 1 1.7681 -2.6006 9.5719 27 1 -0.5482 -2.9798 10.1813 28 1 0.1687 -3.2944 7.8863 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8895 31 1 -0.3634 0.5128 -0.8905 32 1 1.6052 -1.7213 -1.2985 33 1 1.7615 -0.1586 -2.1391 34 1 6.1049 -2.3621 -2.8902 35 1 7.5042 -1.6967 -2.0141 36 1 6.1023 -2.3188 -1.1108 37 1 5.7708 1.4292 -0.7440 38 1 7.3118 0.4236 -0.6221 39 1 7.5398 0.4652 -3.1486 40 1 5.9989 1.4709 -3.2720 41 1 5.1896 -1.3245 -0.0143 42 1 3.8398 -2.4822 0.0872 43 1 3.9160 0.3385 1.2541 44 1 3.9335 -1.1897 2.1669 45 1 1.2783 0.8833 2.4079 46 1 1.5244 0.7822 5.0897 47 1 -0.1343 0.3249 4.6338 48 1 -0.6511 -0.2715 10.5889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073745379.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:59 Heat of formation + Delta-G solvation = -55.494975 kcal Electronic energy + Delta-G solvation = -27664.104468 eV Core-core repulsion = 23845.655543 eV Total energy + Delta-G solvation = -3818.448925 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.03439 -39.69283 -38.02885 -36.97372 -34.90187 -33.10005 -32.46383 -31.55940 -29.33481 -29.14457 -27.21032 -25.73194 -25.39639 -22.97311 -22.87570 -22.63148 -20.63354 -20.34382 -19.02671 -17.88108 -17.23668 -16.61973 -16.51397 -16.14122 -15.78406 -15.20717 -15.06441 -14.98496 -14.58423 -14.40294 -14.18138 -13.77379 -13.71235 -13.43347 -13.36035 -13.00499 -12.87607 -12.81855 -12.68349 -12.34151 -12.24804 -12.16965 -11.98368 -11.84706 -11.38770 -11.29484 -11.22832 -11.03436 -10.98145 -10.79552 -10.59580 -10.46711 -9.99215 -9.88599 -9.59454 -9.07337 -9.02516 -8.96942 -8.53505 -6.94860 -6.31494 -4.03432 2.21808 2.52730 2.72682 2.91646 3.24002 3.27850 3.31288 3.47715 3.61385 3.98890 4.20565 4.28573 4.30436 4.38570 4.44067 4.49017 4.56715 4.68972 4.78915 4.87473 4.99238 5.03820 5.07551 5.17791 5.19034 5.21268 5.24828 5.31480 5.34668 5.38135 5.44691 5.46174 5.48571 5.56401 5.65434 5.68609 5.72295 5.72549 5.79379 5.90789 5.97538 6.02101 6.17580 6.50145 7.01628 7.56148 7.82248 7.91574 8.39112 8.44123 9.14578 10.77744 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021738 B = 0.002243 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.780077 B =12482.188194 C =13012.742240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.111 4.111 3 H 0.079 0.921 4 C 0.119 3.881 5 N -0.607 5.607 6 C 0.554 3.446 7 O -0.540 6.540 8 C -0.163 4.163 9 C -0.115 4.115 10 C -0.159 4.159 11 C -0.144 4.144 12 C 0.107 3.893 13 C -0.146 4.146 14 C 0.153 3.847 15 H 0.091 0.909 16 N -0.731 5.731 17 C 0.533 3.467 18 O -0.519 6.519 19 C -0.125 4.125 20 S -0.141 6.141 21 C -0.522 4.522 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.274 1.274 28 H -0.235 1.235 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.103 0.897 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.074 0.926 43 H 0.069 0.931 44 H 0.087 0.913 45 H 0.399 0.601 46 H 0.096 0.904 47 H 0.096 0.904 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.865 0.508 -24.974 27.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 H 0.097 0.903 4 C -0.004 4.004 5 N -0.340 5.340 6 C 0.342 3.658 7 O -0.417 6.417 8 C -0.166 4.166 9 C -0.172 4.172 10 C -0.196 4.196 11 C -0.181 4.181 12 C -0.016 4.016 13 C -0.186 4.186 14 C 0.047 3.953 15 H 0.109 0.891 16 N -0.384 5.384 17 C 0.319 3.681 18 O -0.393 6.393 19 C -0.276 4.276 20 S 0.085 5.915 21 C -0.669 4.669 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.516 5.516 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.199 1.199 28 H -0.159 1.159 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.114 0.886 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.116 0.884 38 H 0.124 0.876 39 H 0.122 0.878 40 H 0.120 0.880 41 H 0.114 0.886 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.105 0.895 45 H 0.233 0.767 46 H 0.114 0.886 47 H 0.115 0.885 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 12.031 -1.220 -25.242 27.989 hybrid contribution -0.430 1.219 0.562 1.409 sum 11.601 -0.001 -24.680 27.271 Atomic orbital electron populations 1.21765 0.93437 1.02761 1.02406 1.21772 0.96957 1.00315 0.94052 0.90266 1.21654 0.79002 1.01241 0.98489 1.48142 1.06657 1.60748 1.18414 1.19570 0.87436 0.76323 0.82444 1.90690 1.74993 1.47138 1.28851 1.21389 0.91444 0.94362 1.09390 1.21438 1.00434 0.92523 1.02845 1.23137 1.02589 0.99537 0.94360 1.23042 1.00900 0.99137 0.95058 1.21970 0.99124 0.97323 0.83230 1.22351 0.96130 1.01722 0.98378 1.20890 0.92702 0.98054 0.83620 0.89145 1.46029 1.68092 1.14518 1.09796 1.20275 0.77072 0.86988 0.83791 1.90691 1.48414 1.15965 1.84240 1.23287 1.04334 1.03603 0.96327 1.84771 1.86030 1.16942 1.03748 1.22315 1.49710 0.99258 0.95645 0.89408 1.24725 0.93397 0.98318 0.94932 1.69944 1.42946 1.36062 1.02697 0.86727 0.79309 0.85168 0.80586 1.19223 1.19949 1.15929 0.92090 0.91673 0.92180 0.90977 0.88582 0.91636 0.91235 0.91177 0.88385 0.87606 0.87837 0.87959 0.88597 0.90732 0.91219 0.89475 0.76709 0.88566 0.88526 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.02 37.16 0.34 -0.80 16 2 C -0.11 -0.90 2.46 -90.50 -0.22 -1.12 16 3 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 4 C 0.12 1.02 5.69 -3.71 -0.02 1.00 16 5 N -0.61 -5.36 2.98 -172.54 -0.51 -5.88 16 6 C 0.55 5.74 6.96 -10.99 -0.08 5.66 16 7 O -0.54 -7.50 16.19 5.55 0.09 -7.41 16 8 C -0.16 -1.24 1.35 -155.67 -0.21 -1.45 16 9 C -0.12 -0.68 9.33 37.16 0.35 -0.33 16 10 C -0.16 -0.99 9.50 -26.70 -0.25 -1.25 16 11 C -0.14 -1.00 9.75 -26.69 -0.26 -1.27 16 12 C 0.11 0.81 5.65 -3.56 -0.02 0.79 16 13 C -0.15 -1.32 5.65 -26.61 -0.15 -1.47 16 14 C 0.15 1.52 1.88 -67.89 -0.13 1.39 16 15 H 0.09 1.07 7.58 -51.93 -0.39 0.68 16 16 N -0.73 -8.31 4.37 -53.77 -0.23 -8.55 16 17 C 0.53 8.70 7.81 -10.98 -0.09 8.62 16 18 O -0.52 -10.33 15.52 5.56 0.09 -10.25 16 19 C -0.12 -2.30 6.16 36.01 0.22 -2.08 16 20 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 21 C -0.52 -14.79 10.04 30.94 0.31 -14.48 16 22 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 23 C 0.09 2.75 5.50 -17.43 -0.10 2.65 16 24 N -0.88 -26.29 13.97 55.49 0.78 -25.52 16 25 Si 0.86 21.48 27.74 -169.99 -4.71 16.77 16 26 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 28 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 29 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.53 7.36 -51.93 -0.38 0.14 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.10 0.92 7.03 -51.93 -0.37 0.56 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 36 H 0.07 0.36 5.92 -51.93 -0.31 0.06 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.11 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.10 0.84 8.04 -51.93 -0.42 0.42 16 41 H 0.10 0.61 4.38 -51.93 -0.23 0.38 16 42 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.40 3.61 8.31 -40.82 -0.34 3.27 16 46 H 0.10 1.65 8.14 -51.92 -0.42 1.23 16 47 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 48 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 395.93 15.07 5.97 5.97 Total: -1.00 -34.66 395.93 -8.78 -43.44 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -7.93 Total: 1.02 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.31 Total: -4.12 kcal Atomic # 7 Polarization: -39.97 SS G_CDS: 0.03 Total: -39.95 kcal Atomic # 8 Polarization: -17.83 SS G_CDS: 0.18 Total: -17.66 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.77 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.66 -8.78 -43.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745379.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.055 kcal (2) G-P(sol) polarization free energy of solvation -34.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds