Wall clock time and date at job start Sat Apr 11 2020 06:03:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.49874 * 2 1 4 4 C 1.53197 * 109.49593 * 239.93558 * 2 1 3 5 5 N 1.46926 * 108.89257 * 185.33715 * 4 2 1 6 6 C 1.34770 * 120.63524 * 233.67833 * 5 4 2 7 7 O 1.21290 * 119.99686 * 355.52786 * 6 5 4 8 8 C 1.50698 * 120.00306 * 175.52556 * 6 5 4 9 9 C 1.52999 * 115.54947 * 68.03336 * 8 6 5 10 10 C 1.52993 * 117.50142 * 282.35964 * 8 6 5 11 11 C 1.53000 * 117.49883 * 213.69869 * 8 6 5 12 12 C 1.47214 * 118.55345 * 53.54047 * 5 4 2 13 13 C 1.53186 * 108.85401 * 306.47598 * 12 5 4 14 14 C 1.53040 * 109.50256 * 120.09765 * 2 1 3 15 15 H 1.08993 * 109.45981 * 61.30507 * 14 2 1 16 16 N 1.46502 * 109.45681 * 301.33752 * 14 2 1 17 17 C 1.34778 * 119.99717 * 155.00030 * 16 14 2 18 18 O 1.21272 * 120.00313 * 359.97438 * 17 16 14 19 19 C 1.50703 * 119.99694 * 179.97438 * 17 16 14 20 20 S 1.80998 * 109.47138 * 179.97438 * 19 17 16 21 21 C 1.76196 * 99.99958 * 179.97438 * 20 19 17 22 22 H 1.07998 * 120.00187 * 359.97438 * 21 20 19 23 23 C 1.38804 * 119.99616 * 179.97438 * 21 20 19 24 24 N 1.31634 * 119.99370 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 120.00271 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.46949 * 89.99940 * 25 23 21 27 27 H 1.48500 * 109.47349 * 209.99901 * 25 23 21 28 28 H 1.48497 * 109.47330 * 329.99788 * 25 23 21 29 29 H 1.08996 * 109.47063 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46805 * 300.06123 * 1 2 3 31 31 H 1.08998 * 109.47672 * 60.06421 * 1 2 3 32 32 H 1.08997 * 109.58607 * 305.19561 * 4 2 1 33 33 H 1.09002 * 109.58718 * 65.48243 * 4 2 1 34 34 H 1.09005 * 109.47357 * 54.41268 * 9 8 6 35 35 H 1.09003 * 109.47261 * 174.41289 * 9 8 6 36 36 H 1.09002 * 109.46923 * 294.41564 * 9 8 6 37 37 H 1.09002 * 117.50166 * 0.02562 * 10 8 6 38 38 H 1.09006 * 117.50339 * 145.01833 * 10 8 6 39 39 H 1.09002 * 117.49776 * 214.97564 * 11 8 6 40 40 H 1.09003 * 117.50217 * 359.97438 * 11 8 6 41 41 H 1.08994 * 109.53347 * 186.67132 * 12 5 4 42 42 H 1.09000 * 109.67330 * 66.36697 * 12 5 4 43 43 H 1.08995 * 109.50084 * 294.69803 * 13 12 5 44 44 H 1.09001 * 109.52619 * 174.61829 * 13 12 5 45 45 H 0.97000 * 120.00309 * 334.99360 * 16 14 2 46 46 H 1.09002 * 109.47162 * 299.99974 * 19 17 16 47 47 H 1.09000 * 109.47112 * 59.99824 * 19 17 16 48 48 H 0.97003 * 119.99334 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0276 0.0000 4 6 2.0412 -0.7235 -1.2498 5 7 3.5047 -0.8286 -1.1734 6 6 4.2789 -0.3842 -2.1831 7 8 3.7676 0.0336 -3.2006 8 6 5.7796 -0.4062 -2.0480 9 6 6.4187 -1.7958 -2.0133 10 6 6.4290 0.6914 -1.2028 11 6 6.5666 0.7165 -2.7271 12 6 4.1053 -1.4266 0.0303 13 6 3.5710 -0.6953 1.2657 14 6 2.0409 -0.7234 1.2481 15 1 1.6970 -1.7576 1.2347 16 7 1.5266 -0.0536 2.4452 17 6 1.3987 -0.7393 3.5985 18 8 1.7088 -1.9107 3.6452 19 6 0.8702 -0.0501 4.8301 20 16 0.8163 -1.2272 6.2040 21 6 0.1808 -0.1854 7.4748 22 1 -0.0448 0.8492 7.2625 23 6 -0.0299 -0.6944 8.7489 24 7 -0.5042 0.0842 9.6984 25 14 0.3596 -2.4840 9.1159 26 1 1.7681 -2.6006 9.5719 27 1 -0.5482 -2.9798 10.1813 28 1 0.1687 -3.2944 7.8863 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5148 0.8895 31 1 -0.3634 0.5128 -0.8905 32 1 1.6052 -1.7213 -1.2985 33 1 1.7615 -0.1586 -2.1391 34 1 6.1049 -2.3621 -2.8902 35 1 7.5042 -1.6967 -2.0141 36 1 6.1023 -2.3188 -1.1108 37 1 5.7708 1.4292 -0.7440 38 1 7.3118 0.4236 -0.6221 39 1 7.5398 0.4652 -3.1486 40 1 5.9989 1.4709 -3.2720 41 1 5.1896 -1.3245 -0.0143 42 1 3.8398 -2.4822 0.0872 43 1 3.9160 0.3385 1.2541 44 1 3.9335 -1.1897 2.1669 45 1 1.2783 0.8833 2.4079 46 1 1.5244 0.7822 5.0897 47 1 -0.1343 0.3249 4.6338 48 1 -0.6511 -0.2715 10.5889 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001073745379.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:03:58 Heat of formation + Delta-G solvation = -77.872323 kcal Electronic energy + Delta-G solvation = -27665.074822 eV Core-core repulsion = 23845.655543 eV Total energy + Delta-G solvation = -3819.419280 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.80908 -40.77417 -38.94049 -37.69238 -35.85034 -34.66380 -33.94862 -32.53709 -30.46173 -29.80984 -27.88749 -27.84239 -26.32206 -23.73860 -23.40399 -23.28922 -21.69520 -21.30450 -19.90618 -19.62532 -18.02410 -17.84993 -17.42699 -17.15664 -17.00779 -16.59506 -16.30369 -15.92338 -15.67840 -15.34121 -15.07239 -14.96946 -14.71372 -14.69806 -14.33394 -14.11149 -13.85807 -13.52000 -13.42424 -13.33066 -13.25589 -13.01046 -12.99482 -12.92835 -12.71040 -12.53138 -12.43330 -12.11608 -12.00765 -11.86474 -11.54695 -11.51011 -11.16197 -11.02965 -10.94389 -10.73064 -10.52230 -10.09300 -9.78324 -8.97673 -8.50789 -6.21075 1.00494 1.32226 1.44932 1.48212 1.57512 1.59662 1.83854 2.22524 2.26861 2.71508 2.73053 2.87564 3.33458 3.53577 3.70602 3.71701 3.80429 3.87333 3.89406 3.99547 4.06936 4.20467 4.25123 4.29756 4.39587 4.49605 4.58428 4.63958 4.66114 4.71315 4.73003 4.76085 4.81183 4.89402 4.92305 4.96426 5.01592 5.04822 5.17818 5.19620 5.24136 5.30209 5.44851 5.49895 5.71388 6.12399 6.28378 6.48405 6.94450 7.05585 7.21625 8.61602 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.021738 B = 0.002243 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1287.780077 B =12482.188194 C =13012.742240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.118 3.882 5 N -0.603 5.603 6 C 0.549 3.451 7 O -0.583 6.583 8 C -0.174 4.174 9 C -0.112 4.112 10 C -0.144 4.144 11 C -0.150 4.150 12 C 0.110 3.890 13 C -0.140 4.140 14 C 0.152 3.848 15 H 0.074 0.926 16 N -0.707 5.707 17 C 0.540 3.460 18 O -0.557 6.557 19 C -0.113 4.113 20 S -0.172 6.172 21 C -0.529 4.529 22 H 0.061 0.939 23 C 0.043 3.957 24 N -0.918 5.918 25 Si 0.915 3.085 26 H -0.262 1.262 27 H -0.261 1.261 28 H -0.235 1.235 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.077 0.923 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.088 0.912 36 H 0.077 0.923 37 H 0.092 0.908 38 H 0.128 0.872 39 H 0.122 0.878 40 H 0.083 0.917 41 H 0.114 0.886 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.072 0.928 45 H 0.414 0.586 46 H 0.112 0.888 47 H 0.111 0.889 48 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.296 0.121 -25.882 29.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.116 4.116 3 H 0.104 0.896 4 C -0.005 4.005 5 N -0.334 5.334 6 C 0.338 3.662 7 O -0.463 6.463 8 C -0.177 4.177 9 C -0.169 4.169 10 C -0.181 4.181 11 C -0.187 4.187 12 C -0.012 4.012 13 C -0.179 4.179 14 C 0.048 3.952 15 H 0.092 0.908 16 N -0.359 5.359 17 C 0.325 3.675 18 O -0.435 6.435 19 C -0.264 4.264 20 S 0.055 5.945 21 C -0.677 4.677 22 H 0.079 0.921 23 C -0.162 4.162 24 N -0.556 5.556 25 Si 0.737 3.263 26 H -0.186 1.186 27 H -0.186 1.186 28 H -0.159 1.159 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.107 0.893 36 H 0.096 0.904 37 H 0.110 0.890 38 H 0.146 0.854 39 H 0.140 0.860 40 H 0.102 0.898 41 H 0.132 0.868 42 H 0.097 0.903 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.251 0.749 46 H 0.130 0.870 47 H 0.129 0.871 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 13.460 -1.574 -26.161 29.462 hybrid contribution -0.895 1.462 0.705 1.853 sum 12.565 -0.112 -25.456 28.388 Atomic orbital electron populations 1.21766 0.93001 1.02600 1.02934 1.21645 0.97177 1.00203 0.92624 0.89575 1.21662 0.79170 1.01481 0.98218 1.48205 1.06700 1.60110 1.18434 1.20098 0.88717 0.75445 0.81916 1.90666 1.75998 1.49150 1.30518 1.21446 0.89699 0.95742 1.10768 1.21458 1.01463 0.91235 1.02779 1.23212 1.02768 0.98207 0.93941 1.23100 1.01360 0.98487 0.95758 1.22033 1.00068 0.97185 0.81937 1.22267 0.95039 1.02294 0.98341 1.21009 0.93565 0.97301 0.83356 0.90754 1.45791 1.66432 1.15008 1.08714 1.19850 0.76947 0.86383 0.84273 1.90686 1.50465 1.17482 1.84834 1.23284 1.05932 1.02373 0.94813 1.84664 1.85736 1.18846 1.05286 1.22477 1.49363 0.98719 0.97096 0.92070 1.25595 0.93344 1.02328 0.94911 1.70026 1.44194 1.38012 1.03362 0.85849 0.79508 0.80319 0.80588 1.18634 1.18560 1.15910 0.92618 0.91736 0.91090 0.90462 0.89526 0.92556 0.89346 0.90437 0.88968 0.85396 0.85988 0.89828 0.86821 0.90311 0.90291 0.90934 0.74924 0.87010 0.87091 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.02 71.98 0.65 -1.35 16 2 C -0.10 -1.38 2.46 -10.72 -0.03 -1.41 16 3 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 4 C 0.12 1.89 5.69 86.36 0.49 2.38 16 5 N -0.60 -9.84 2.98 -818.19 -2.44 -12.28 16 6 C 0.55 10.89 6.96 87.66 0.61 11.50 16 7 O -0.58 -16.29 16.19 -3.06 -0.05 -16.34 16 8 C -0.17 -2.34 1.35 -52.93 -0.07 -2.42 16 9 C -0.11 -1.06 9.33 71.98 0.67 -0.39 16 10 C -0.14 -1.44 9.50 30.62 0.29 -1.15 16 11 C -0.15 -1.87 9.75 30.62 0.30 -1.57 16 12 C 0.11 1.45 5.65 86.31 0.49 1.94 16 13 C -0.14 -2.24 5.65 30.67 0.17 -2.06 16 14 C 0.15 2.76 1.88 45.02 0.08 2.84 16 15 H 0.07 1.67 7.58 -2.39 -0.02 1.65 16 16 N -0.71 -14.57 4.37 -442.41 -1.93 -16.51 16 17 C 0.54 16.79 7.81 87.66 0.68 17.48 16 18 O -0.56 -21.65 15.52 -3.01 -0.05 -21.70 16 19 C -0.11 -4.01 6.16 71.24 0.44 -3.57 16 20 S -0.17 -8.38 18.55 -56.49 -1.05 -9.43 16 21 C -0.53 -30.23 10.04 67.96 0.68 -29.55 16 22 H 0.06 3.70 8.03 -2.91 -0.02 3.67 16 23 C 0.04 2.52 5.50 84.86 0.47 2.99 16 24 N -0.92 -55.39 13.97 21.65 0.30 -55.09 16 25 Si 0.92 44.26 27.74 68.60 1.90 46.16 16 26 H -0.26 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 28 H -0.24 -11.29 6.74 99.48 0.67 -10.62 16 29 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 0.90 7.36 -2.39 -0.02 0.89 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 33 H 0.09 1.62 7.03 -2.39 -0.02 1.60 16 34 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.09 0.51 8.09 -2.39 -0.02 0.49 16 36 H 0.08 0.60 5.92 -2.39 -0.01 0.58 16 37 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.13 0.74 8.14 -2.38 -0.02 0.72 16 39 H 0.12 1.02 8.14 -2.39 -0.02 1.01 16 40 H 0.08 1.36 8.04 -2.39 -0.02 1.34 16 41 H 0.11 1.13 4.38 -2.39 -0.01 1.12 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.43 16 45 H 0.41 6.32 8.31 -92.71 -0.77 5.55 16 46 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 47 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 48 H 0.28 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -76.04 395.93 2.77 -73.27 By element: Atomic # 1 Polarization: 16.08 SS G_CDS: 0.15 Total: 16.23 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 5.93 Total: -4.32 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -4.07 Total: -83.87 kcal Atomic # 8 Polarization: -37.95 SS G_CDS: -0.10 Total: -38.04 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Atomic # 16 Polarization: -8.38 SS G_CDS: -1.05 Total: -9.43 kcal Total: -76.04 2.77 -73.27 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073745379.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.601 kcal (2) G-P(sol) polarization free energy of solvation -76.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds