Wall clock time and date at job start Sat Apr 11 2020 06:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50694 * 120.00460 * 2 1 4 4 C 1.53002 * 109.47426 * 124.99844 * 3 2 1 5 5 C 1.50694 * 109.47426 * 179.97438 * 4 3 2 6 6 O 1.21283 * 119.99923 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00035 * 179.97438 * 5 4 3 8 8 C 1.46498 * 120.00061 * 179.97438 * 7 5 4 9 9 H 1.09004 * 109.44744 * 35.04278 * 8 7 5 10 10 C 1.53039 * 109.46416 * 275.07235 * 8 7 5 11 11 C 1.53620 * 109.24437 * 178.48702 * 10 8 7 12 12 N 1.46928 * 108.53888 * 54.85908 * 11 10 8 13 13 C 1.34779 * 120.62856 * 126.37107 * 12 11 10 14 14 O 1.21282 * 119.99922 * 179.72064 * 13 12 11 15 15 C 1.50699 * 120.00037 * 359.71632 * 13 12 11 16 16 S 1.81000 * 109.46881 * 180.02562 * 15 13 12 17 17 C 1.76206 * 99.99929 * 180.02562 * 16 15 13 18 18 H 1.07998 * 119.99720 * 359.97438 * 17 16 15 19 19 C 1.38796 * 119.99847 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00398 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99778 * 180.02562 * 19 17 16 22 22 H 1.48502 * 109.46907 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47393 * 119.99621 * 21 19 17 24 24 H 1.48503 * 109.46784 * 240.00115 * 21 19 17 25 25 C 1.46924 * 118.73884 * 306.09282 * 12 11 10 26 26 C 1.53041 * 109.45977 * 155.00407 * 8 7 5 27 27 H 1.09001 * 109.49530 * 61.43543 * 26 8 7 28 28 C 1.52999 * 109.52184 * 301.35528 * 26 8 7 29 29 H 1.07997 * 120.00555 * 179.97438 * 1 2 3 30 30 H 1.08004 * 119.99713 * 359.97438 * 1 2 3 31 31 H 1.08004 * 119.99713 * 180.02562 * 2 1 3 32 32 H 1.09007 * 109.47168 * 5.00186 * 3 2 1 33 33 H 1.08997 * 109.47654 * 245.00311 * 3 2 1 34 34 H 1.09007 * 109.46668 * 60.00035 * 4 3 2 35 35 H 1.09007 * 109.47125 * 300.00691 * 4 3 2 36 36 H 0.97003 * 120.00056 * 0.02562 * 7 5 4 37 37 H 1.08997 * 109.49876 * 298.56703 * 10 8 7 38 38 H 1.09009 * 109.49496 * 58.66512 * 10 8 7 39 39 H 1.09001 * 109.74495 * 295.12635 * 11 10 8 40 40 H 1.08996 * 109.66761 * 174.55234 * 11 10 8 41 41 H 1.09000 * 109.47247 * 60.00371 * 15 13 12 42 42 H 1.09001 * 109.47358 * 299.99798 * 15 13 12 43 43 H 0.96996 * 120.00393 * 180.02562 * 20 19 17 44 44 H 1.09002 * 109.58588 * 173.65209 * 25 12 11 45 45 H 1.08999 * 109.58627 * 294.07051 * 25 12 11 46 46 H 1.08996 * 109.47320 * 300.14283 * 28 26 8 47 47 H 1.08996 * 109.47276 * 60.14949 * 28 26 8 48 48 H 1.09012 * 109.46847 * 180.14148 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3330 1.1816 5 6 3.7891 2.6377 1.1813 6 8 3.5706 3.4641 0.3209 7 7 4.7056 2.8867 2.1376 8 6 5.4390 4.1548 2.1370 9 1 4.7845 4.9524 1.7852 10 6 6.6506 4.0427 1.2088 11 6 7.3943 5.3866 1.1824 12 7 7.7253 5.7645 2.5632 13 6 8.9933 6.0645 2.9078 14 8 9.2529 6.3799 4.0497 15 6 10.0886 6.0079 1.8742 16 16 11.6649 6.4600 2.6402 17 6 12.7346 6.3148 1.2475 18 1 12.3354 6.0191 0.2886 19 6 14.0903 6.5795 1.3832 20 7 14.5769 6.9395 2.5521 21 14 15.2242 6.4263 -0.0933 22 1 14.4363 6.0105 -1.2814 23 1 15.8691 7.7370 -0.3605 24 1 16.2687 5.4089 0.1882 25 6 6.6468 5.8152 3.5596 26 6 5.9105 4.4719 3.5580 27 1 6.5846 3.6870 3.9012 28 6 4.7014 4.5511 4.4922 29 1 -0.5401 -0.9352 -0.0004 30 1 -0.5400 0.9354 0.0004 31 1 1.8500 -0.9354 -0.0004 32 1 1.3587 2.1316 0.0896 33 1 2.6213 1.4026 -0.9313 34 1 3.7400 0.5063 1.0920 35 1 2.4773 1.2354 2.1131 36 1 4.8801 2.2259 2.8260 37 1 7.3177 3.2620 1.5741 38 1 6.3156 3.7939 0.2017 39 1 6.7577 6.1511 0.7371 40 1 8.3109 5.2873 0.6010 41 1 9.8631 6.7051 1.0673 42 1 10.1571 4.9969 1.4723 43 1 15.5243 7.1248 2.6468 44 1 7.0701 5.9987 4.5472 45 1 5.9505 6.6139 3.3041 46 1 4.0271 5.3352 4.1480 47 1 4.1779 3.5951 4.4907 48 1 5.0380 4.7794 5.5036 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073806301.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:03 Heat of formation + Delta-G solvation = -69.882429 kcal Electronic energy + Delta-G solvation = -26900.281393 eV Core-core repulsion = 23081.208581 eV Total energy + Delta-G solvation = -3819.072812 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.66599 -39.58003 -37.64448 -35.78182 -34.82653 -33.25930 -32.43745 -31.70059 -30.57514 -29.53606 -26.72745 -25.71561 -25.33535 -23.92503 -22.60915 -20.86974 -20.51492 -20.21350 -19.16809 -17.71520 -17.27417 -16.97581 -16.31522 -16.10799 -15.74230 -15.40800 -15.11327 -14.81178 -14.74008 -14.25958 -14.09957 -13.90484 -13.80504 -13.48711 -13.23580 -12.97442 -12.84080 -12.64506 -12.55357 -12.32940 -12.18603 -11.90607 -11.70059 -11.50596 -11.45628 -11.31349 -11.24018 -11.07699 -11.01900 -10.77027 -10.70618 -10.18330 -9.80322 -9.75518 -9.43641 -9.29108 -9.08165 -8.56795 -8.23020 -6.50961 -6.22499 -3.93064 1.82078 2.33781 2.80665 2.91178 3.06079 3.21059 3.25693 3.30690 3.58277 4.19197 4.21251 4.34342 4.45580 4.51054 4.61584 4.65502 4.83947 4.86585 4.88789 4.89882 5.03589 5.10980 5.12849 5.17949 5.23074 5.37974 5.38759 5.40501 5.53256 5.54818 5.56687 5.60875 5.68892 5.72755 5.77540 5.86343 5.86734 5.91150 6.04134 6.10961 6.17468 6.20836 6.32653 6.60164 7.16789 7.52314 7.59419 7.91678 8.34748 8.53484 9.23065 10.84976 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017843 B = 0.002026 C = 0.001863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1568.905115 B =13819.426533 C =15026.312280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C -0.080 4.080 4 C -0.137 4.137 5 C 0.512 3.488 6 O -0.539 6.539 7 N -0.725 5.725 8 C 0.151 3.849 9 H 0.090 0.910 10 C -0.145 4.145 11 C 0.111 3.889 12 N -0.622 5.622 13 C 0.536 3.464 14 O -0.517 6.517 15 C -0.151 4.151 16 S -0.062 6.062 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.122 3.878 26 C -0.113 4.113 27 H 0.081 0.919 28 C -0.143 4.143 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.400 0.600 37 H 0.071 0.929 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.099 0.901 45 H 0.066 0.934 46 H 0.057 0.943 47 H 0.057 0.943 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.982 -12.888 -1.653 29.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.174 4.174 3 C -0.117 4.117 4 C -0.177 4.177 5 C 0.299 3.701 6 O -0.416 6.416 7 N -0.376 5.376 8 C 0.046 3.954 9 H 0.108 0.892 10 C -0.184 4.184 11 C -0.013 4.013 12 N -0.358 5.358 13 C 0.324 3.676 14 O -0.391 6.391 15 C -0.302 4.302 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.206 1.206 25 C -0.002 4.002 26 C -0.133 4.133 27 H 0.100 0.900 28 C -0.201 4.201 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.234 0.766 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.089 0.911 40 H 0.112 0.888 41 H 0.108 0.892 42 H 0.107 0.893 43 H 0.078 0.922 44 H 0.117 0.883 45 H 0.084 0.916 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -26.584 -11.751 -0.475 29.069 hybrid contribution 0.535 -0.946 -1.992 2.269 sum -26.050 -12.697 -2.467 29.084 Atomic orbital electron populations 1.23897 0.96004 1.01943 1.01080 1.22975 0.96103 0.98360 0.99968 1.20501 0.97785 0.95424 0.98004 1.21637 0.99107 0.95652 1.01290 1.20731 0.79377 0.88971 0.81044 1.90720 1.65893 1.48048 1.36928 1.46132 1.40745 1.20076 1.30696 1.21006 0.92808 0.86389 0.95156 0.89162 1.22399 0.96937 0.98276 1.00786 1.21769 1.00957 0.95437 0.83096 1.48145 1.07421 1.70133 1.10097 1.20341 0.82300 0.75610 0.89326 1.90689 1.81641 1.46028 1.20738 1.23559 1.00471 1.04966 1.01164 1.85395 0.93457 1.89138 1.15492 1.22903 0.94911 1.53846 0.96622 0.90882 1.24987 0.97238 0.94531 0.96803 1.70023 1.14123 1.43255 1.22868 0.86124 0.80006 0.77982 0.81430 1.19603 1.20547 1.20577 1.21519 0.88711 0.95288 0.94663 1.21803 0.97798 0.99364 0.94356 0.90025 1.21753 0.96981 1.02078 0.99325 0.88481 0.88509 0.87305 0.90724 0.90136 0.88727 0.88834 0.76590 0.91024 0.90195 0.91138 0.88801 0.89213 0.89270 0.92236 0.88315 0.91565 0.92340 0.92403 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.04 14.32 29.02 0.42 -0.62 16 2 C -0.16 -0.87 9.52 -36.03 -0.34 -1.21 16 3 C -0.08 -0.53 4.95 -27.88 -0.14 -0.66 16 4 C -0.14 -0.74 5.68 -27.88 -0.16 -0.90 16 5 C 0.51 4.33 7.79 -10.99 -0.09 4.25 16 6 O -0.54 -6.76 15.64 5.55 0.09 -6.67 16 7 N -0.73 -5.10 4.37 -53.77 -0.23 -5.33 16 8 C 0.15 1.33 1.88 -67.89 -0.13 1.20 16 9 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 10 C -0.14 -1.41 5.67 -26.39 -0.15 -1.56 16 11 C 0.11 1.25 6.37 -3.49 -0.02 1.23 16 12 N -0.62 -8.62 2.97 -172.51 -0.51 -9.13 16 13 C 0.54 10.07 7.72 -10.99 -0.08 9.98 16 14 O -0.52 -11.63 15.27 5.56 0.08 -11.54 16 15 C -0.15 -3.06 4.50 36.01 0.16 -2.89 16 16 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 17 C -0.53 -15.19 9.50 30.94 0.29 -14.90 16 18 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 19 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.10 13.22 55.49 0.73 -25.36 16 21 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 C 0.12 1.40 5.71 -3.71 -0.02 1.38 16 26 C -0.11 -0.98 2.46 -90.50 -0.22 -1.20 16 27 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 28 C -0.14 -0.99 9.02 37.16 0.34 -0.66 16 29 H 0.10 0.42 8.06 -52.49 -0.42 0.00 16 30 H 0.10 0.51 7.84 -52.48 -0.41 0.10 16 31 H 0.11 0.49 8.06 -52.48 -0.42 0.07 16 32 H 0.07 0.57 7.75 -51.93 -0.40 0.17 16 33 H 0.08 0.62 8.10 -51.93 -0.42 0.20 16 34 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.40 1.88 8.31 -40.82 -0.34 1.54 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.81 8.14 -51.92 -0.42 0.39 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.09 1.08 5.93 -51.93 -0.31 0.78 16 41 H 0.09 1.69 7.93 -51.92 -0.41 1.28 16 42 H 0.09 1.67 7.70 -51.91 -0.40 1.27 16 43 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 44 H 0.10 1.31 7.01 -51.93 -0.36 0.95 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.06 0.33 7.37 -51.93 -0.38 -0.05 16 48 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 LS Contribution 404.52 15.07 6.10 6.10 Total: -1.00 -35.54 404.52 -9.25 -44.79 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.03 Total: -0.76 kcal Atomic # 6 Polarization: -4.33 SS G_CDS: -0.24 Total: -4.57 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: -0.01 Total: -39.83 kcal Atomic # 8 Polarization: -18.38 SS G_CDS: 0.17 Total: -18.21 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.54 -9.25 -44.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073806301.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.097 kcal (2) G-P(sol) polarization free energy of solvation -35.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.785 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds