Wall clock time and date at job start Sat Apr 11 2020 06:04:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50696 * 120.00795 * 2 1 4 4 C 1.52992 * 109.47278 * 124.99628 * 3 2 1 5 5 C 1.50706 * 109.47274 * 180.02562 * 4 3 2 6 6 O 1.21281 * 119.99699 * 0.02562 * 5 4 3 7 7 N 1.34773 * 120.00080 * 180.02562 * 5 4 3 8 8 C 1.46506 * 119.99969 * 180.02562 * 7 5 4 9 9 H 1.09002 * 109.45986 * 34.68789 * 8 7 5 10 10 C 1.53040 * 109.45707 * 274.72105 * 8 7 5 11 11 C 1.53192 * 109.31596 * 301.34287 * 10 8 7 12 12 N 1.46928 * 108.77326 * 305.36844 * 11 10 8 13 13 C 1.34778 * 120.62968 * 233.62782 * 12 11 10 14 14 O 1.21274 * 119.99973 * 179.97438 * 13 12 11 15 15 C 1.50697 * 119.99766 * 359.97438 * 13 12 11 16 16 S 1.81002 * 109.47030 * 180.02562 * 15 13 12 17 17 C 1.76201 * 99.99764 * 180.02562 * 16 15 13 18 18 H 1.07998 * 120.00691 * 359.97438 * 17 16 15 19 19 C 1.38802 * 119.99744 * 180.02562 * 17 16 15 20 20 N 1.31628 * 120.00018 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00210 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46748 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47335 * 119.99836 * 21 19 17 24 24 H 1.48498 * 109.47438 * 240.00125 * 21 19 17 25 25 C 1.46922 * 118.74094 * 53.60806 * 12 11 10 26 26 C 1.53034 * 109.46185 * 154.65351 * 8 7 5 27 27 H 1.09004 * 109.49651 * 178.60521 * 26 8 7 28 28 C 1.53005 * 109.49778 * 298.70188 * 26 8 7 29 29 H 1.08000 * 119.99414 * 359.97438 * 1 2 3 30 30 H 1.08002 * 120.00719 * 179.97438 * 1 2 3 31 31 H 1.08005 * 119.99573 * 179.97438 * 2 1 3 32 32 H 1.09004 * 109.46433 * 4.99962 * 3 2 1 33 33 H 1.08993 * 109.47343 * 245.00142 * 3 2 1 34 34 H 1.09004 * 109.47116 * 60.00752 * 4 3 2 35 35 H 1.08998 * 109.47794 * 300.00664 * 4 3 2 36 36 H 0.97005 * 120.00161 * 359.72088 * 7 5 4 37 37 H 1.08998 * 109.49685 * 61.29855 * 10 8 7 38 38 H 1.09002 * 109.49850 * 181.39109 * 10 8 7 39 39 H 1.08999 * 109.58585 * 65.15131 * 11 10 8 40 40 H 1.08994 * 109.58958 * 185.43594 * 11 10 8 41 41 H 1.08999 * 109.47479 * 300.00391 * 15 13 12 42 42 H 1.09003 * 109.47141 * 59.99903 * 15 13 12 43 43 H 0.97002 * 120.00363 * 180.02562 * 20 19 17 44 44 H 1.08998 * 109.59002 * 66.17622 * 25 12 11 45 45 H 1.08999 * 109.58966 * 186.46491 * 25 12 11 46 46 H 1.08999 * 109.46637 * 60.00275 * 28 26 8 47 47 H 1.09001 * 109.47143 * 179.97438 * 28 26 8 48 48 H 1.08998 * 109.47121 * 300.00345 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 3.0351 1.3329 1.1816 5 6 3.7883 2.6382 1.1820 6 8 3.5693 3.4649 0.3220 7 7 4.7053 2.8868 2.1379 8 6 5.4372 4.1560 2.1385 9 1 4.7834 4.9523 1.7826 10 6 6.6529 4.0439 1.2158 11 6 7.5521 2.9015 1.6988 12 7 7.8857 3.1274 3.1117 13 6 9.1699 3.1415 3.5203 14 8 9.4323 3.3295 4.6893 15 6 10.2798 2.9236 2.5245 16 16 11.8762 2.9986 3.3743 17 6 12.9605 2.7204 2.0136 18 1 12.5567 2.5694 1.0234 19 6 14.3336 2.6944 2.2145 20 7 14.8258 2.8780 3.4214 21 14 15.4832 2.3989 0.7721 22 1 14.6859 2.2236 -0.4684 23 1 16.3911 3.5635 0.6159 24 1 16.2865 1.1751 1.0219 25 6 6.7927 3.3382 4.0707 26 6 5.9021 4.4757 3.5610 27 1 6.4679 5.4074 3.5580 28 6 4.6843 4.6200 4.4760 29 1 -0.5399 0.9354 0.0004 30 1 -0.5401 -0.9353 -0.0004 31 1 1.8499 -0.9354 0.0004 32 1 1.3587 2.1315 0.0896 33 1 2.6214 1.4024 -0.9313 34 1 3.7400 0.5063 1.0920 35 1 2.4774 1.2354 2.1130 36 1 4.8776 2.2272 2.8280 37 1 6.3197 3.8393 0.1983 38 1 7.2117 4.9796 1.2348 39 1 7.0252 1.9529 1.5949 40 1 8.4655 2.8791 1.1045 41 1 10.1626 1.9455 2.0579 42 1 10.2385 3.6985 1.7590 43 1 15.7854 2.8601 3.5618 44 1 6.2039 2.4253 4.1603 45 1 7.2063 3.6032 5.0438 46 1 4.1200 3.6874 4.4794 47 1 5.0159 4.8473 5.4892 48 1 4.0494 5.4275 4.1113 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001073806303.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:10 Heat of formation + Delta-G solvation = -67.377364 kcal Electronic energy + Delta-G solvation = -27287.903446 eV Core-core repulsion = 23468.939262 eV Total energy + Delta-G solvation = -3818.964184 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87373 -39.49442 -37.71472 -35.73604 -34.54458 -33.25330 -32.44907 -31.75445 -30.56372 -29.60051 -26.74482 -25.68596 -25.27198 -24.48142 -22.58198 -20.97213 -20.24622 -20.16139 -18.94687 -17.76247 -17.45861 -16.69066 -16.39229 -16.07355 -15.78175 -15.38070 -15.08211 -14.82348 -14.78848 -14.29782 -14.08362 -13.98888 -13.81608 -13.63012 -13.20192 -12.98649 -12.94375 -12.67381 -12.51569 -12.33032 -12.09704 -12.00242 -11.67756 -11.48808 -11.43316 -11.25603 -11.21469 -11.08633 -11.03102 -10.79197 -10.72592 -10.15403 -9.81532 -9.72414 -9.42613 -9.33776 -9.09350 -8.56909 -8.24759 -6.52517 -6.23772 -3.94453 1.85110 2.36627 2.83998 2.91776 3.00090 3.20153 3.24515 3.29676 3.56069 4.18028 4.23434 4.35146 4.48216 4.51964 4.57913 4.68901 4.81732 4.84341 4.88542 4.92171 4.99021 5.11572 5.13481 5.15284 5.22798 5.28882 5.41742 5.45687 5.47250 5.56598 5.57893 5.64609 5.69954 5.75155 5.77326 5.83271 5.85016 5.91163 5.94079 6.08824 6.20985 6.25060 6.35585 6.56806 7.18437 7.48846 7.58104 7.93984 8.33401 8.50463 9.21793 10.83666 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015618 B = 0.002225 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.425485 B =12581.929819 C =13677.258769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.156 4.156 3 C -0.079 4.079 4 C -0.138 4.138 5 C 0.513 3.487 6 O -0.541 6.541 7 N -0.724 5.724 8 C 0.152 3.848 9 H 0.091 0.909 10 C -0.147 4.147 11 C 0.111 3.889 12 N -0.620 5.620 13 C 0.536 3.464 14 O -0.516 6.516 15 C -0.151 4.151 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.117 3.883 26 C -0.115 4.115 27 H 0.092 0.908 28 C -0.143 4.143 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.109 0.891 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.093 0.907 36 H 0.399 0.601 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.065 0.935 40 H 0.091 0.909 41 H 0.089 0.911 42 H 0.089 0.911 43 H 0.268 0.732 44 H 0.059 0.941 45 H 0.098 0.902 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.567 -2.735 -3.816 27.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.174 4.174 3 C -0.116 4.116 4 C -0.178 4.178 5 C 0.300 3.700 6 O -0.418 6.418 7 N -0.376 5.376 8 C 0.047 3.953 9 H 0.109 0.891 10 C -0.186 4.186 11 C -0.013 4.013 12 N -0.357 5.357 13 C 0.324 3.676 14 O -0.390 6.390 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.006 4.006 26 C -0.135 4.135 27 H 0.110 0.890 28 C -0.201 4.201 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.127 0.873 32 H 0.092 0.908 33 H 0.099 0.901 34 H 0.113 0.887 35 H 0.112 0.888 36 H 0.235 0.765 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.078 0.922 44 H 0.077 0.923 45 H 0.116 0.884 46 H 0.075 0.925 47 H 0.081 0.919 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -27.148 -1.846 -2.581 27.333 hybrid contribution 0.543 -0.811 -2.008 2.233 sum -26.605 -2.657 -4.589 27.129 Atomic orbital electron populations 1.23890 0.96003 1.01914 1.01172 1.22984 0.96105 0.98401 0.99879 1.20492 0.97756 0.95388 0.98003 1.21641 0.99148 0.95706 1.01273 1.20717 0.79296 0.88954 0.81041 1.90711 1.65932 1.48078 1.37030 1.46186 1.40663 1.20154 1.30642 1.20948 0.92775 0.86466 0.95063 0.89087 1.22321 0.96283 1.00128 0.99905 1.21653 1.00134 0.97760 0.81725 1.48115 1.05542 1.73542 1.08469 1.20342 0.82522 0.75329 0.89369 1.90690 1.82506 1.47381 1.18448 1.23555 1.00368 1.04497 1.01706 1.85398 0.90761 1.94170 1.13124 1.22897 0.93247 1.56885 0.95260 0.90894 1.24994 0.97322 0.94632 0.96641 1.70024 1.13302 1.46369 1.20548 0.86120 0.80068 0.78053 0.81280 1.19606 1.20555 1.20555 1.21527 0.87810 0.96752 0.94485 1.21821 0.97136 1.00417 0.94094 0.88993 1.21747 0.96833 1.02030 0.99495 0.88545 0.88486 0.87269 0.90773 0.90142 0.88671 0.88849 0.76503 0.90079 0.90179 0.91702 0.89077 0.89316 0.89248 0.92225 0.92293 0.88360 0.92538 0.91903 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.10 14.32 29.02 0.42 -0.68 16 2 C -0.16 -0.92 9.52 -36.03 -0.34 -1.26 16 3 C -0.08 -0.54 4.95 -27.89 -0.14 -0.68 16 4 C -0.14 -0.79 5.68 -27.88 -0.16 -0.95 16 5 C 0.51 4.37 7.80 -10.98 -0.09 4.29 16 6 O -0.54 -6.71 15.64 5.56 0.09 -6.62 16 7 N -0.72 -5.22 3.60 -53.76 -0.19 -5.41 16 8 C 0.15 1.31 2.22 -67.89 -0.15 1.16 16 9 H 0.09 0.89 7.57 -51.93 -0.39 0.50 16 10 C -0.15 -1.41 5.77 -26.61 -0.15 -1.56 16 11 C 0.11 1.17 6.08 -3.71 -0.02 1.15 16 12 N -0.62 -8.11 2.97 -172.77 -0.51 -8.62 16 13 C 0.54 9.81 7.72 -10.99 -0.08 9.72 16 14 O -0.52 -11.40 15.27 5.56 0.08 -11.32 16 15 C -0.15 -3.00 4.50 36.00 0.16 -2.84 16 16 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 17 C -0.53 -15.10 9.50 30.94 0.29 -14.81 16 18 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -25.99 13.22 55.49 0.73 -25.25 16 21 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.12 1.23 5.42 -3.71 -0.02 1.21 16 26 C -0.11 -0.98 2.67 -90.50 -0.24 -1.22 16 27 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 28 C -0.14 -0.98 9.05 37.16 0.34 -0.65 16 29 H 0.10 0.53 7.84 -52.49 -0.41 0.12 16 30 H 0.10 0.45 8.06 -52.49 -0.42 0.03 16 31 H 0.11 0.54 8.06 -52.48 -0.42 0.12 16 32 H 0.07 0.58 7.75 -51.93 -0.40 0.17 16 33 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 34 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.40 2.24 6.73 -40.82 -0.27 1.97 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 39 H 0.06 0.60 7.74 -51.93 -0.40 0.20 16 40 H 0.09 1.03 5.94 -51.93 -0.31 0.72 16 41 H 0.09 1.64 7.94 -51.92 -0.41 1.23 16 42 H 0.09 1.66 7.69 -51.92 -0.40 1.26 16 43 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 44 H 0.06 0.49 6.64 -51.93 -0.34 0.15 16 45 H 0.10 1.24 7.00 -51.93 -0.36 0.88 16 46 H 0.06 0.34 7.54 -51.93 -0.39 -0.05 16 47 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 400.55 15.07 6.04 6.04 Total: -1.00 -35.07 400.55 -9.16 -44.23 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -7.87 Total: -0.32 kcal Atomic # 6 Polarization: -4.85 SS G_CDS: -0.29 Total: -5.13 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.03 Total: -39.29 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: 0.17 Total: -17.94 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.07 -9.16 -44.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001073806303.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.151 kcal (2) G-P(sol) polarization free energy of solvation -35.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds