Wall clock time and date at job start Sat Apr 11 2020 06:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.52425 * 2 1 4 4 C 1.53196 * 109.49588 * 239.92135 * 2 1 3 5 5 N 1.46929 * 108.77486 * 185.40772 * 4 2 1 6 6 C 1.34766 * 120.63348 * 233.63046 * 5 4 2 7 7 O 1.21286 * 120.00250 * 0.02562 * 6 5 4 8 8 C 1.50699 * 120.00319 * 180.02562 * 6 5 4 9 9 S 1.81004 * 109.47634 * 180.02562 * 8 6 5 10 10 C 1.76196 * 99.99924 * 180.02562 * 9 8 6 11 11 H 1.07994 * 120.00535 * 359.97438 * 10 9 8 12 12 C 1.38797 * 119.99488 * 180.02562 * 10 9 8 13 13 N 1.31635 * 120.00107 * 180.02562 * 12 10 9 14 14 Si 1.86796 * 120.00349 * 359.97438 * 12 10 9 15 15 H 1.48506 * 109.47335 * 89.99845 * 14 12 10 16 16 H 1.48500 * 109.47415 * 210.00220 * 14 12 10 17 17 H 1.48505 * 109.47387 * 330.00006 * 14 12 10 18 18 C 1.46924 * 118.73409 * 53.61317 * 5 4 2 19 19 C 1.53191 * 108.77817 * 306.38734 * 18 5 4 20 20 C 1.53035 * 109.50087 * 120.08561 * 2 1 3 21 21 H 1.09004 * 109.45792 * 301.33922 * 20 2 1 22 22 N 1.46501 * 109.46300 * 61.30779 * 20 2 1 23 23 C 1.34773 * 119.99985 * 205.00509 * 22 20 2 24 24 O 1.21280 * 120.00476 * 359.97438 * 23 22 20 25 25 C 1.50703 * 120.00080 * 180.02562 * 23 22 20 26 26 C 1.53002 * 115.54725 * 34.41160 * 25 23 22 27 27 C 1.52994 * 117.50076 * 248.74450 * 25 23 22 28 28 C 1.52994 * 117.50291 * 180.08166 * 25 23 22 29 29 H 1.09004 * 109.47145 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46977 * 300.07499 * 1 2 3 31 31 H 1.09000 * 109.47198 * 60.08106 * 1 2 3 32 32 H 1.08998 * 109.58804 * 305.20210 * 4 2 1 33 33 H 1.09003 * 109.58394 * 65.62787 * 4 2 1 34 34 H 1.09003 * 109.47289 * 300.00768 * 8 6 5 35 35 H 1.09005 * 109.46555 * 59.99877 * 8 6 5 36 36 H 0.96996 * 120.00261 * 179.97438 * 13 12 10 37 37 H 1.08999 * 109.58511 * 186.60055 * 18 5 4 38 38 H 1.09005 * 109.70744 * 66.24599 * 18 5 4 39 39 H 1.09006 * 109.49784 * 294.68835 * 19 18 5 40 40 H 1.08997 * 109.52766 * 174.60233 * 19 18 5 41 41 H 0.96995 * 119.99517 * 25.00157 * 22 20 2 42 42 H 1.09002 * 109.47303 * 85.58903 * 26 25 23 43 43 H 1.08997 * 109.47042 * 205.58291 * 26 25 23 44 44 H 1.08996 * 109.47430 * 325.58349 * 26 25 23 45 45 H 1.09003 * 117.49482 * 0.02562 * 27 25 23 46 46 H 1.08998 * 117.50294 * 145.01353 * 27 25 23 47 47 H 1.08990 * 117.50336 * 214.97640 * 28 25 23 48 48 H 1.09005 * 117.49593 * 359.97438 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0413 -0.7238 -1.2497 5 7 3.5046 -0.8290 -1.1697 6 6 4.2810 -0.3855 -2.1780 7 8 3.7731 0.1067 -3.1633 8 6 5.7805 -0.5009 -2.0813 9 16 6.5359 0.1775 -3.5798 10 6 8.2387 -0.0796 -3.2073 11 1 8.5237 -0.5380 -2.2720 12 6 9.2139 0.3082 -4.1157 13 7 10.4861 0.1157 -3.8378 14 14 8.7211 1.1018 -5.7333 15 1 8.6489 2.5750 -5.5602 16 1 9.7296 0.7743 -6.7729 17 1 7.3928 0.5871 -6.1528 18 6 4.1053 -1.4266 0.0305 19 6 3.5709 -0.6951 1.2659 20 6 2.0408 -0.7231 1.2482 21 1 1.6582 -0.2246 2.1388 22 7 1.5787 -2.1132 1.2305 23 6 1.4506 -2.7955 2.3857 24 8 1.7183 -2.2590 3.4399 25 6 0.9757 -4.2257 2.3674 26 6 1.4238 -5.0544 1.1619 27 6 -0.4083 -4.5180 2.9505 28 6 0.8492 -4.9453 3.7116 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5150 0.8893 31 1 -0.3633 0.5126 -0.8907 32 1 1.6052 -1.7216 -1.2982 33 1 1.7637 -0.1578 -2.1389 34 1 6.1326 0.0561 -1.2131 35 1 6.0580 -1.5499 -1.9770 36 1 11.1676 0.3863 -4.4727 37 1 5.1896 -1.3245 -0.0140 38 1 3.8397 -2.4823 0.0877 39 1 3.9159 0.3389 1.2540 40 1 3.9335 -1.1893 2.1672 41 1 1.3648 -2.5424 0.3874 42 1 2.4106 -5.4745 1.3563 43 1 0.7122 -5.8623 0.9916 44 1 1.4679 -4.4169 0.2789 45 1 -0.9755 -3.6758 3.3469 46 1 -0.9994 -5.3010 2.4755 47 1 1.0847 -6.0092 3.7371 48 1 1.1098 -4.3845 4.6092 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074005663.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:18 Heat of formation + Delta-G solvation = -53.610468 kcal Electronic energy + Delta-G solvation = -28012.101670 eV Core-core repulsion = 24193.734464 eV Total energy + Delta-G solvation = -3818.367207 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.05853 -39.82845 -38.07438 -36.75212 -34.64254 -33.31223 -32.45439 -31.43245 -29.74194 -29.00204 -26.75899 -25.71361 -25.29591 -23.91112 -22.90249 -22.48238 -20.40312 -19.98166 -19.03026 -17.74381 -17.44896 -16.83567 -16.34208 -15.89288 -15.61622 -15.36687 -15.14913 -14.97957 -14.48700 -14.16750 -14.13797 -13.96416 -13.82562 -13.43011 -13.31009 -13.08943 -12.94997 -12.82279 -12.73187 -12.41150 -12.15310 -12.11922 -11.91536 -11.72959 -11.30887 -11.30804 -11.23182 -11.02415 -11.00375 -10.81698 -10.60177 -10.43506 -10.03546 -9.87589 -9.53220 -9.37082 -9.02039 -8.65095 -8.51366 -6.94203 -6.30392 -4.02462 2.18794 2.65326 2.77948 2.87785 3.14965 3.31778 3.39635 3.48780 3.56251 4.17138 4.19836 4.31252 4.33867 4.40030 4.44424 4.51563 4.54653 4.63207 4.79167 4.92895 4.96879 5.08618 5.15168 5.15564 5.16761 5.20216 5.25534 5.27349 5.32921 5.42222 5.47362 5.48227 5.60238 5.63121 5.67703 5.72341 5.73363 5.73910 5.80160 5.85783 5.89887 5.96475 6.21216 6.48193 7.17041 7.39029 7.92437 7.92598 8.37737 8.40121 9.15693 10.78825 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019750 B = 0.002477 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.406636 B =11300.826572 C =11914.707726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.115 4.115 3 H 0.093 0.907 4 C 0.117 3.883 5 N -0.618 5.618 6 C 0.535 3.465 7 O -0.518 6.518 8 C -0.122 4.122 9 S -0.143 6.143 10 C -0.521 4.521 11 H 0.088 0.912 12 C 0.095 3.905 13 N -0.880 5.880 14 Si 0.857 3.143 15 H -0.267 1.267 16 H -0.274 1.274 17 H -0.235 1.235 18 C 0.109 3.891 19 C -0.147 4.147 20 C 0.152 3.848 21 H 0.092 0.908 22 N -0.718 5.718 23 C 0.552 3.448 24 O -0.539 6.539 25 C -0.169 4.169 26 C -0.115 4.115 27 C -0.150 4.150 28 C -0.144 4.144 29 H 0.056 0.944 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.099 0.901 34 H 0.097 0.903 35 H 0.096 0.904 36 H 0.271 0.729 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.399 0.601 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.497 -9.049 13.411 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.134 4.134 3 H 0.111 0.889 4 C -0.006 4.006 5 N -0.354 5.354 6 C 0.323 3.677 7 O -0.393 6.393 8 C -0.272 4.272 9 S 0.084 5.916 10 C -0.668 4.668 11 H 0.106 0.894 12 C -0.113 4.113 13 N -0.517 5.517 14 Si 0.682 3.318 15 H -0.192 1.192 16 H -0.199 1.199 17 H -0.159 1.159 18 C -0.014 4.014 19 C -0.187 4.187 20 C 0.048 3.952 21 H 0.110 0.890 22 N -0.371 5.371 23 C 0.338 3.662 24 O -0.416 6.416 25 C -0.172 4.172 26 C -0.172 4.172 27 C -0.187 4.187 28 C -0.181 4.181 29 H 0.075 0.925 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.081 0.919 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.236 0.764 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.122 0.878 47 H 0.121 0.879 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -23.840 -7.900 12.624 28.109 hybrid contribution 0.712 -0.459 0.126 0.857 sum -23.127 -8.359 12.750 27.700 Atomic orbital electron populations 1.21751 0.93803 1.02166 1.02436 1.21822 0.96572 1.00873 0.94177 0.88897 1.21546 0.80073 1.00057 0.98892 1.48075 1.06016 1.62605 1.18705 1.20307 0.88809 0.76642 0.81942 1.90690 1.75018 1.43097 1.30472 1.23312 0.93250 1.05501 1.05151 1.84785 1.04896 1.80765 1.21177 1.22299 0.88370 1.47357 1.08813 0.89402 1.24715 0.94042 0.94337 0.98226 1.69938 0.99472 1.45701 1.36545 0.86734 0.80784 0.80927 0.83392 1.19210 1.19943 1.15932 1.21694 0.99288 0.96783 0.83671 1.22327 0.95338 1.02463 0.98543 1.20972 0.93835 0.81526 0.98907 0.89023 1.46087 1.68130 1.13713 1.09129 1.19462 0.76610 0.86506 0.83600 1.90700 1.50074 1.69957 1.30842 1.21514 1.03453 0.93937 0.98335 1.21361 1.02155 0.99019 0.94674 1.23108 0.89425 1.03469 1.02741 1.23039 1.00321 1.00571 0.94158 0.92492 0.92138 0.91894 0.92260 0.88314 0.88527 0.88543 0.91926 0.88944 0.91517 0.90068 0.89927 0.76378 0.91312 0.91349 0.92054 0.88381 0.87781 0.87902 0.87417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.97 9.05 37.16 0.34 -0.63 16 2 C -0.11 -0.95 2.67 -90.50 -0.24 -1.19 16 3 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 4 C 0.12 1.19 5.42 -3.71 -0.02 1.17 16 5 N -0.62 -7.75 2.97 -172.77 -0.51 -8.26 16 6 C 0.54 9.30 7.72 -10.99 -0.08 9.22 16 7 O -0.52 -10.83 15.28 5.55 0.08 -10.74 16 8 C -0.12 -2.33 4.50 36.01 0.16 -2.16 16 9 S -0.14 -3.58 18.55 -107.50 -1.99 -5.58 16 10 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 11 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 12 C 0.10 2.78 5.50 -17.43 -0.10 2.68 16 13 N -0.88 -26.46 13.97 55.49 0.78 -25.68 16 14 Si 0.86 21.68 27.74 -169.99 -4.71 16.96 16 15 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 17 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 18 C 0.11 1.13 6.08 -3.71 -0.02 1.11 16 19 C -0.15 -1.41 5.77 -26.61 -0.15 -1.56 16 20 C 0.15 1.32 2.21 -67.89 -0.15 1.17 16 21 H 0.09 0.90 7.58 -51.93 -0.39 0.50 16 22 N -0.72 -5.59 3.50 -53.76 -0.19 -5.78 16 23 C 0.55 5.26 7.35 -10.99 -0.08 5.18 16 24 O -0.54 -7.10 15.92 5.56 0.09 -7.01 16 25 C -0.17 -1.21 2.61 -155.66 -0.41 -1.61 16 26 C -0.11 -0.62 9.79 37.16 0.36 -0.26 16 27 C -0.15 -0.89 9.88 -26.70 -0.26 -1.15 16 28 C -0.14 -0.98 9.77 -26.70 -0.26 -1.24 16 29 H 0.06 0.35 7.53 -51.93 -0.39 -0.05 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.48 6.64 -51.93 -0.34 0.14 16 33 H 0.10 1.19 7.00 -51.93 -0.36 0.83 16 34 H 0.10 1.74 7.69 -51.91 -0.40 1.34 16 35 H 0.10 1.73 7.94 -51.91 -0.41 1.31 16 36 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 37 H 0.09 1.02 5.93 -51.93 -0.31 0.71 16 38 H 0.07 0.62 7.74 -51.93 -0.40 0.22 16 39 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.40 2.57 5.03 -40.82 -0.21 2.36 16 42 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 43 H 0.07 0.29 7.90 -51.93 -0.41 -0.12 16 44 H 0.06 0.30 6.39 -51.93 -0.33 -0.03 16 45 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.10 0.43 8.05 -51.93 -0.42 0.02 16 47 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 48 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 LS Contribution 391.82 15.07 5.90 5.90 Total: -1.00 -34.61 391.82 -8.90 -43.51 By element: Atomic # 1 Polarization: 8.27 SS G_CDS: -7.74 Total: 0.54 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -0.61 Total: -3.86 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.07 Total: -39.72 kcal Atomic # 8 Polarization: -17.93 SS G_CDS: 0.17 Total: -17.75 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.96 kcal Atomic # 16 Polarization: -3.58 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.61 -8.90 -43.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074005663.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.103 kcal (2) G-P(sol) polarization free energy of solvation -34.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds