Wall clock time and date at job start Sat Apr 11 2020 06:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08997 * 109.52259 * 2 1 4 4 C 1.53195 * 109.49699 * 239.91685 * 2 1 3 5 5 N 1.46919 * 108.89273 * 185.48402 * 4 2 1 6 6 C 1.34783 * 120.63144 * 233.55709 * 5 4 2 7 7 O 1.21274 * 119.99655 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99922 * 179.97438 * 6 5 4 9 9 S 1.81002 * 109.46922 * 180.02562 * 8 6 5 10 10 C 1.76204 * 99.99932 * 180.02562 * 9 8 6 11 11 H 1.07994 * 120.00106 * 359.97438 * 10 9 8 12 12 C 1.38799 * 119.99685 * 179.97438 * 10 9 8 13 13 N 1.31632 * 120.00277 * 0.02562 * 12 10 9 14 14 Si 1.86802 * 119.99781 * 179.97438 * 12 10 9 15 15 H 1.48503 * 109.46948 * 90.00349 * 14 12 10 16 16 H 1.48500 * 109.47056 * 210.00208 * 14 12 10 17 17 H 1.48492 * 109.47222 * 330.00387 * 14 12 10 18 18 C 1.46928 * 118.73982 * 53.53793 * 5 4 2 19 19 C 1.53191 * 108.77343 * 306.39079 * 18 5 4 20 20 C 1.53039 * 109.31416 * 54.63452 * 19 18 5 21 21 H 1.09007 * 109.45640 * 58.65727 * 20 19 18 22 22 N 1.46499 * 109.46160 * 178.61109 * 20 19 18 23 23 C 1.34780 * 120.00136 * 275.00576 * 22 20 19 24 24 O 1.21279 * 119.99762 * 359.97438 * 23 22 20 25 25 C 1.50701 * 119.99972 * 179.97438 * 23 22 20 26 26 C 1.53000 * 115.54683 * 34.32740 * 25 23 22 27 27 C 1.52993 * 117.50016 * 248.61959 * 25 23 22 28 28 C 1.52998 * 117.49580 * 179.97438 * 25 23 22 29 29 H 1.09005 * 109.47207 * 180.08746 * 1 2 3 30 30 H 1.09002 * 109.47201 * 300.07916 * 1 2 3 31 31 H 1.09001 * 109.47583 * 60.08531 * 1 2 3 32 32 H 1.09002 * 109.58720 * 65.62433 * 4 2 1 33 33 H 1.08996 * 109.58651 * 305.34329 * 4 2 1 34 34 H 1.09001 * 109.47385 * 300.00399 * 8 6 5 35 35 H 1.08997 * 109.47457 * 60.00250 * 8 6 5 36 36 H 0.96997 * 119.99912 * 179.97438 * 13 12 10 37 37 H 1.08998 * 109.58787 * 66.18123 * 18 5 4 38 38 H 1.09007 * 109.58600 * 186.46436 * 18 5 4 39 39 H 1.09002 * 109.49529 * 174.58688 * 19 18 5 40 40 H 1.09005 * 109.49968 * 294.64599 * 19 18 5 41 41 H 0.97000 * 119.99467 * 94.99687 * 22 20 19 42 42 H 1.09004 * 109.47568 * 85.58483 * 26 25 23 43 43 H 1.09000 * 109.46829 * 205.57943 * 26 25 23 44 44 H 1.08999 * 109.47514 * 325.57866 * 26 25 23 45 45 H 1.09004 * 117.50018 * 359.97438 * 27 25 23 46 46 H 1.09002 * 117.50021 * 145.02004 * 27 25 23 47 47 H 1.09004 * 117.49395 * 214.97586 * 28 25 23 48 48 H 1.08994 * 117.50308 * 0.02562 * 28 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0413 -0.7239 -1.2496 5 7 3.5044 -0.8321 -1.1714 6 6 4.2806 -0.3909 -2.1811 7 8 3.7723 0.1015 -3.1660 8 6 5.7799 -0.5084 -2.0857 9 16 6.5347 0.1671 -3.5858 10 6 8.2376 -0.0919 -3.2147 11 1 8.5229 -0.5496 -2.2791 12 6 9.2124 0.2923 -4.1251 13 7 8.8648 0.8506 -5.2653 14 14 11.0178 0.0184 -3.7314 15 1 11.4350 -1.3182 -4.2262 16 1 11.8335 1.0680 -4.3933 17 1 11.2201 0.0874 -2.2620 18 6 4.1055 -1.4301 0.0285 19 6 3.5741 -0.6965 1.2639 20 6 2.0440 -0.7214 1.2483 21 1 1.6978 -1.7550 1.2365 22 7 1.5327 -0.0495 2.4455 23 6 1.4035 -0.7341 3.5993 24 8 1.7102 -1.9065 3.6463 25 6 0.8781 -0.0427 4.8309 26 6 -0.1815 1.0327 4.5825 27 6 1.8554 0.1815 5.9864 28 6 0.7543 -0.8742 6.1092 29 1 -0.3634 -1.0277 0.0016 30 1 -0.3634 0.5151 0.8893 31 1 -0.3634 0.5125 -0.8907 32 1 1.7637 -0.1580 -2.1389 33 1 1.6033 -1.7207 -1.2993 34 1 6.1337 0.0492 -1.2185 35 1 6.0562 -1.5575 -1.9804 36 1 9.5460 1.1195 -5.9012 37 1 3.8357 -2.4846 0.0856 38 1 5.1901 -1.3324 -0.0187 39 1 3.9369 -1.1913 2.1649 40 1 3.9218 0.3365 1.2512 41 1 1.2872 0.8882 2.4078 42 1 -1.1658 0.5674 4.5282 43 1 -0.1654 1.7542 5.3994 44 1 0.0316 1.5427 3.6431 45 1 2.8784 -0.1715 5.8561 46 1 1.7438 1.0954 6.5700 47 1 -0.0816 -0.6545 6.7735 48 1 1.0532 -1.9212 6.0595 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074005666.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:30 Heat of formation + Delta-G solvation = -56.577685 kcal Electronic energy + Delta-G solvation = -27490.253267 eV Core-core repulsion = 23671.757393 eV Total energy + Delta-G solvation = -3818.495875 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.84897 -39.81077 -37.94394 -36.75739 -34.87927 -33.26999 -32.43258 -31.31672 -29.56404 -29.03897 -26.68779 -25.62254 -25.20856 -23.24923 -22.91337 -22.46226 -20.86186 -19.81987 -19.03025 -17.71893 -17.38165 -16.94950 -16.30930 -15.81277 -15.49079 -15.28056 -14.89277 -14.80770 -14.73719 -14.23873 -14.06946 -13.87956 -13.64824 -13.46490 -13.17030 -13.02002 -12.84803 -12.74891 -12.63682 -12.32422 -12.18855 -11.93456 -11.89159 -11.67465 -11.31939 -11.24497 -11.06542 -11.02428 -11.00881 -10.77258 -10.70872 -10.47098 -10.05381 -9.81046 -9.43353 -9.28794 -9.06978 -8.56697 -8.23196 -6.50664 -6.22007 -3.92642 2.17884 2.72681 2.90923 3.05535 3.22203 3.25721 3.30074 3.38528 3.58396 4.15069 4.19434 4.20739 4.34657 4.38121 4.48188 4.52794 4.61333 4.88022 4.89523 5.03664 5.12515 5.13160 5.17154 5.18483 5.19997 5.21871 5.27443 5.39115 5.39708 5.46326 5.54613 5.56308 5.59409 5.63368 5.69283 5.72018 5.77880 5.86645 5.87133 5.91454 6.04329 6.11280 6.19499 6.60407 7.17713 7.52561 7.59427 7.91933 8.34884 8.53752 9.23347 10.85384 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.017475 B = 0.002272 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.907127 B =12323.331699 C =13395.964142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 H 0.081 0.919 4 C 0.122 3.878 5 N -0.622 5.622 6 C 0.536 3.464 7 O -0.517 6.517 8 C -0.151 4.151 9 S -0.061 6.061 10 C -0.535 4.535 11 H 0.072 0.928 12 C 0.073 3.927 13 N -0.867 5.867 14 Si 0.919 3.081 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.112 3.888 19 C -0.145 4.145 20 C 0.151 3.849 21 H 0.091 0.909 22 N -0.719 5.719 23 C 0.551 3.449 24 O -0.538 6.538 25 C -0.170 4.170 26 C -0.114 4.114 27 C -0.149 4.149 28 C -0.144 4.144 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.063 0.937 32 H 0.099 0.901 33 H 0.066 0.934 34 H 0.089 0.911 35 H 0.090 0.910 36 H 0.268 0.732 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.071 0.929 41 H 0.400 0.600 42 H 0.066 0.934 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.099 0.901 46 H 0.104 0.896 47 H 0.102 0.898 48 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.329 -0.811 22.113 29.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.133 4.133 3 H 0.100 0.900 4 C -0.002 4.002 5 N -0.358 5.358 6 C 0.324 3.676 7 O -0.391 6.391 8 C -0.302 4.302 9 S 0.165 5.835 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.208 1.208 17 H -0.197 1.197 18 C -0.012 4.012 19 C -0.184 4.184 20 C 0.047 3.953 21 H 0.109 0.891 22 N -0.370 5.370 23 C 0.337 3.663 24 O -0.415 6.415 25 C -0.174 4.174 26 C -0.171 4.171 27 C -0.187 4.187 28 C -0.182 4.182 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.107 0.893 35 H 0.108 0.892 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.112 0.888 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.235 0.765 42 H 0.085 0.915 43 H 0.086 0.914 44 H 0.080 0.920 45 H 0.118 0.882 46 H 0.123 0.877 47 H 0.120 0.880 48 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -19.793 -0.845 20.476 28.491 hybrid contribution 1.695 -0.255 1.450 2.245 sum -18.098 -1.100 21.926 28.452 Atomic orbital electron populations 1.21753 0.93840 1.02415 1.02139 1.21806 0.96491 1.00736 0.94284 0.90033 1.21510 0.80042 1.00581 0.98035 1.48138 1.06107 1.62767 1.18755 1.20337 0.88856 0.76523 0.81840 1.90687 1.75005 1.42934 1.30448 1.23558 0.93673 1.05357 1.07562 1.85393 1.02292 1.78938 1.16830 1.22855 0.91200 1.47151 1.07078 0.90948 1.24993 0.99580 0.94542 0.94479 1.70018 1.34154 1.38360 1.07744 0.86171 0.82643 0.78127 0.78579 1.20254 1.20755 1.19700 1.21675 0.99378 0.96875 0.83311 1.22322 0.95286 1.02111 0.98685 1.21030 0.93321 0.97773 0.83180 0.89120 1.46037 1.66542 1.14492 1.09944 1.19472 0.77029 0.86313 0.83464 1.90705 1.50165 1.16051 1.84578 1.21514 1.03200 1.02982 0.89663 1.21350 0.97077 0.96350 1.02316 1.23117 0.95934 1.01380 0.98224 1.23036 1.00842 0.98068 0.96212 0.92292 0.92422 0.91827 0.88298 0.91548 0.89275 0.89217 0.92189 0.91172 0.88786 0.90188 0.91000 0.76474 0.91521 0.91375 0.91962 0.88244 0.87736 0.87952 0.87403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 9.03 37.16 0.34 -0.69 16 2 C -0.11 -1.01 2.46 -90.48 -0.22 -1.23 16 3 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 4 C 0.12 1.42 5.71 -3.71 -0.02 1.40 16 5 N -0.62 -8.69 2.97 -172.77 -0.51 -9.20 16 6 C 0.54 10.11 7.72 -10.98 -0.08 10.03 16 7 O -0.52 -11.65 15.27 5.56 0.08 -11.56 16 8 C -0.15 -3.06 4.50 36.00 0.16 -2.90 16 9 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 10 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 11 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 12 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 14 Si 0.92 21.41 29.55 -169.99 -5.02 16.39 16 15 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 17 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 18 C 0.11 1.27 6.34 -3.71 -0.02 1.25 16 19 C -0.14 -1.46 5.66 -26.61 -0.15 -1.61 16 20 C 0.15 1.40 1.88 -67.87 -0.13 1.27 16 21 H 0.09 0.97 7.57 -51.93 -0.39 0.58 16 22 N -0.72 -5.72 4.27 -53.75 -0.23 -5.95 16 23 C 0.55 5.34 7.36 -10.98 -0.08 5.26 16 24 O -0.54 -7.24 15.92 5.56 0.09 -7.15 16 25 C -0.17 -1.19 2.61 -155.66 -0.41 -1.60 16 26 C -0.11 -0.52 9.79 37.16 0.36 -0.16 16 27 C -0.15 -0.92 9.88 -26.71 -0.26 -1.19 16 28 C -0.14 -0.96 9.77 -26.71 -0.26 -1.22 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.35 7.39 -51.93 -0.38 -0.04 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 1.32 7.00 -51.93 -0.36 0.96 16 33 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.09 1.68 7.69 -51.91 -0.40 1.28 16 35 H 0.09 1.70 7.94 -51.92 -0.41 1.28 16 36 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.09 1.10 5.93 -51.92 -0.31 0.79 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.40 2.37 6.63 -40.82 -0.27 2.10 16 42 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.07 0.24 7.90 -51.93 -0.41 -0.17 16 44 H 0.06 0.24 6.38 -51.93 -0.33 -0.10 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.10 0.46 8.05 -51.93 -0.42 0.04 16 47 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.11 0.90 7.67 -51.93 -0.40 0.50 16 LS Contribution 398.49 15.07 6.01 6.01 Total: -1.00 -35.45 398.49 -9.51 -44.96 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -7.86 Total: 0.11 kcal Atomic # 6 Polarization: -3.74 SS G_CDS: -0.58 Total: -4.32 kcal Atomic # 7 Polarization: -40.54 SS G_CDS: -0.01 Total: -40.55 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: 0.17 Total: -18.72 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.45 -9.51 -44.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074005666.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.617 kcal (2) G-P(sol) polarization free energy of solvation -35.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds