Wall clock time and date at job start Sat Apr 11 2020 06:04:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50699 * 109.47194 * 2 1 4 4 O 1.21281 * 119.99812 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99724 * 180.02562 * 3 2 1 6 6 C 1.49533 * 122.55261 * 0.02562 * 5 3 2 7 7 C 1.52916 * 105.32944 * 109.79902 * 6 5 3 8 8 C 1.51845 * 111.83834 * 101.11096 * 7 6 5 9 9 H 1.08994 * 110.53231 * 61.93132 * 8 7 6 10 10 C 1.54226 * 109.32063 * 185.24334 * 8 7 6 11 11 N 1.46657 * 106.84265 * 146.09839 * 10 8 7 12 12 C 1.34777 * 125.32040 * 161.60951 * 11 10 8 13 13 O 1.21283 * 120.00463 * 179.69320 * 12 11 10 14 14 C 1.50700 * 119.99675 * 359.41443 * 12 11 10 15 15 S 1.80997 * 109.47151 * 180.27780 * 14 12 11 16 16 C 1.76196 * 100.00314 * 179.97438 * 15 14 12 17 17 H 1.08005 * 120.00018 * 0.02562 * 16 15 14 18 18 C 1.38799 * 120.00626 * 179.97438 * 16 15 14 19 19 N 1.31633 * 119.99674 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00584 * 180.02562 * 18 16 15 21 21 H 1.48504 * 109.46793 * 359.97438 * 20 18 16 22 22 H 1.48501 * 109.47282 * 119.99523 * 20 18 16 23 23 H 1.48500 * 109.47237 * 240.00020 * 20 18 16 24 24 C 1.46611 * 109.36513 * 341.33814 * 11 10 8 25 25 C 1.53402 * 108.10467 * 1.62177 * 24 11 10 26 26 H 1.09001 * 110.26250 * 134.81888 * 25 24 11 27 27 C 1.51150 * 110.93917 * 257.22365 * 25 24 11 28 28 C 1.43509 * 122.54474 * 180.02562 * 5 3 2 29 29 H 1.08998 * 109.46945 * 299.99913 * 1 2 3 30 30 H 1.09004 * 109.46900 * 60.00142 * 1 2 3 31 31 H 1.09000 * 109.47035 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47052 * 240.00212 * 2 1 3 33 33 H 1.09000 * 109.47260 * 120.00196 * 2 1 3 34 34 H 1.09007 * 110.26953 * 228.74816 * 6 5 3 35 35 H 1.09000 * 110.26652 * 350.70441 * 6 5 3 36 36 H 1.09008 * 109.00909 * 221.71913 * 7 6 5 37 37 H 1.09006 * 109.00847 * 340.57917 * 7 6 5 38 38 H 1.09002 * 110.11452 * 26.70021 * 10 8 7 39 39 H 1.09005 * 109.91188 * 265.38268 * 10 8 7 40 40 H 1.09009 * 109.47352 * 300.27556 * 14 12 11 41 41 H 1.08998 * 109.47585 * 60.27844 * 14 12 11 42 42 H 0.97003 * 120.00297 * 179.97438 * 19 18 16 43 43 H 1.08999 * 109.74135 * 121.29045 * 24 11 10 44 44 H 1.09002 * 109.74755 * 241.96420 * 24 11 10 45 45 H 1.09003 * 108.99794 * 323.87390 * 27 25 24 46 46 H 1.08999 * 108.99862 * 82.71724 * 27 25 24 47 47 H 1.08998 * 108.52912 * 115.83854 * 28 5 3 48 48 H 1.08998 * 108.40840 * 358.22316 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3426 -0.0005 5 7 3.3575 1.6670 -0.0005 6 6 4.3788 0.5748 -0.0017 7 6 5.0191 0.6215 -1.3895 8 6 6.3675 1.3192 -1.3663 9 1 7.0664 0.7793 -0.7276 10 6 6.8988 1.4509 -2.8082 11 7 7.6433 2.7128 -2.8731 12 6 8.5443 3.0380 -3.8212 13 8 9.1016 4.1146 -3.7845 14 6 8.8639 2.0614 -4.9235 15 16 10.1062 2.7810 -6.0257 16 6 10.2861 1.4657 -7.1843 17 1 9.7059 0.5620 -7.0697 18 6 11.1727 1.5913 -8.2448 19 7 11.8788 2.6933 -8.3854 20 14 11.3629 0.1971 -9.4734 21 1 10.4633 -0.9222 -9.0950 22 1 11.0066 0.6818 -10.8312 23 1 12.7702 -0.2768 -9.4705 24 6 7.2496 3.5679 -1.7492 25 6 6.2297 2.7990 -0.8996 26 1 6.4715 2.8948 0.1589 27 6 4.8258 3.2938 -1.1618 28 6 3.8955 2.9974 0.0000 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8900 34 1 5.1296 0.7590 0.7668 35 1 3.8997 -0.3903 0.1632 36 1 5.1528 -0.3974 -1.7534 37 1 4.3554 1.1565 -2.0689 38 1 6.0679 1.4722 -3.5134 39 1 7.5608 0.6159 -3.0376 40 1 9.2526 1.1394 -4.4908 41 1 7.9585 1.8434 -5.4898 42 1 12.4986 2.7810 -9.1263 43 1 8.1247 3.8088 -1.1457 44 1 6.7977 4.4858 -2.1254 45 1 4.8542 4.3707 -1.3278 46 1 4.4395 2.8070 -2.0573 47 1 4.4434 3.1491 0.9300 48 1 3.0663 3.7041 -0.0312 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074267553.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:34 Heat of formation + Delta-G solvation = -72.560103 kcal Electronic energy + Delta-G solvation = -27520.482639 eV Core-core repulsion = 23701.293715 eV Total energy + Delta-G solvation = -3819.188924 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.15241 -39.85061 -38.28484 -36.22092 -33.69415 -33.02599 -32.67464 -32.44357 -29.97097 -28.52306 -27.84645 -25.54064 -25.20823 -23.97335 -23.01875 -22.61067 -19.64697 -19.50134 -19.27997 -17.77496 -17.72563 -16.76655 -16.50394 -16.32283 -15.79009 -15.27142 -14.96706 -14.81966 -14.63756 -14.44293 -14.21985 -13.84231 -13.72828 -13.48748 -13.23902 -13.01244 -12.74310 -12.62088 -12.40295 -12.36653 -12.19608 -12.14595 -11.84938 -11.70939 -11.62322 -11.58660 -11.08654 -11.03996 -10.98089 -10.87085 -10.75266 -10.62263 -10.14354 -9.82160 -9.43536 -9.09088 -9.08444 -8.50390 -8.24463 -6.51987 -6.23266 -3.93992 2.24217 2.55777 2.91461 3.04079 3.20139 3.25075 3.29844 3.60314 3.97830 3.98532 4.17587 4.20892 4.25017 4.46841 4.55633 4.60095 4.65679 4.74482 4.88415 4.97979 5.00854 5.05421 5.07657 5.11904 5.13362 5.21506 5.33810 5.37739 5.43716 5.45161 5.51448 5.52327 5.54702 5.59016 5.67360 5.74520 5.77987 5.81080 5.82356 5.91760 6.08529 6.11079 6.16619 6.45840 6.99066 7.58020 7.64915 7.80314 8.33712 8.54035 9.22009 10.84217 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.002148 C = 0.002003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.300066 B =13029.394087 C =13975.239209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.142 4.142 3 C 0.519 3.481 4 O -0.541 6.541 5 N -0.613 5.613 6 C 0.108 3.892 7 C -0.137 4.137 8 C -0.093 4.093 9 H 0.089 0.911 10 C 0.107 3.893 11 N -0.622 5.622 12 C 0.547 3.453 13 O -0.515 6.515 14 C -0.146 4.146 15 S -0.061 6.061 16 C -0.534 4.534 17 H 0.073 0.927 18 C 0.073 3.927 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.272 1.272 22 H -0.280 1.280 23 H -0.280 1.280 24 C 0.115 3.885 25 C -0.093 4.093 26 H 0.089 0.911 27 C -0.131 4.131 28 C 0.108 3.892 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.076 0.924 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.268 0.732 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.079 0.921 46 H 0.076 0.924 47 H 0.061 0.939 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.125 -8.491 20.910 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.182 4.182 3 C 0.308 3.692 4 O -0.418 6.418 5 N -0.347 5.347 6 C -0.014 4.014 7 C -0.176 4.176 8 C -0.112 4.112 9 H 0.108 0.892 10 C -0.017 4.017 11 N -0.359 5.359 12 C 0.335 3.665 13 O -0.389 6.389 14 C -0.297 4.297 15 S 0.165 5.835 16 C -0.682 4.682 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.502 5.502 20 Si 0.746 3.254 21 H -0.196 1.196 22 H -0.205 1.205 23 H -0.206 1.206 24 C -0.008 4.008 25 C -0.112 4.112 26 H 0.107 0.893 27 C -0.169 4.169 28 C -0.016 4.016 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.095 0.905 37 H 0.100 0.900 38 H 0.083 0.917 39 H 0.094 0.906 40 H 0.107 0.893 41 H 0.106 0.894 42 H 0.078 0.922 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.097 0.903 46 H 0.094 0.906 47 H 0.079 0.921 48 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.565 -6.255 20.789 28.565 hybrid contribution -0.292 -2.190 -0.901 2.386 sum -18.857 -8.445 19.888 28.678 Atomic orbital electron populations 1.21546 0.92961 1.01679 1.03392 1.21644 0.98631 0.93683 1.04270 1.20725 0.81085 0.92018 0.75381 1.90709 1.54566 1.46746 1.49762 1.48038 1.05454 1.07720 1.73504 1.22353 0.90781 0.90500 0.97736 1.21993 0.96289 1.01692 0.97599 1.22200 0.97054 0.95648 0.96281 0.89236 1.22023 0.96056 0.87284 0.96339 1.48186 1.42563 1.17904 1.27289 1.20032 0.77362 0.87806 0.81253 1.90713 1.49813 1.23840 1.74500 1.23507 1.05779 1.01316 0.99079 1.85419 1.47172 1.24523 1.26341 1.22890 1.28810 1.03431 1.13109 0.90900 1.25003 0.94764 0.96599 0.97287 1.70030 1.24176 1.25541 1.30484 0.86110 0.78119 0.80984 0.80232 1.19627 1.20549 1.20554 1.21720 0.97419 0.93996 0.87710 1.21928 0.94706 0.94443 1.00113 0.89300 1.21542 0.93915 1.02165 0.99313 1.20572 0.98283 0.84668 0.98091 0.92024 0.91932 0.91987 0.88785 0.88956 0.89813 0.89319 0.90525 0.90009 0.91662 0.90561 0.89327 0.89374 0.92220 0.91490 0.91463 0.90270 0.90592 0.92053 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.83 9.20 37.16 0.34 -0.49 16 2 C -0.14 -0.74 4.88 -27.88 -0.14 -0.87 16 3 C 0.52 4.46 7.75 -10.99 -0.09 4.37 16 4 O -0.54 -6.92 15.48 5.56 0.09 -6.84 16 5 N -0.61 -4.16 2.61 -174.30 -0.46 -4.62 16 6 C 0.11 0.43 6.07 -2.40 -0.01 0.42 16 7 C -0.14 -0.68 4.50 -27.36 -0.12 -0.80 16 8 C -0.09 -0.62 2.95 -89.09 -0.26 -0.88 16 9 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 10 C 0.11 1.06 6.07 -3.32 -0.02 1.04 16 11 N -0.62 -8.71 3.31 -172.46 -0.57 -9.28 16 12 C 0.55 10.54 7.85 -10.98 -0.09 10.45 16 13 O -0.51 -12.02 16.17 5.55 0.09 -11.93 16 14 C -0.15 -2.99 5.18 36.01 0.19 -2.80 16 15 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 16 C -0.53 -15.17 9.50 30.94 0.29 -14.88 16 17 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 18 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -26.12 13.22 55.49 0.73 -25.39 16 20 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 21 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 23 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 24 C 0.11 1.31 6.43 -3.77 -0.02 1.28 16 25 C -0.09 -0.68 2.78 -89.86 -0.25 -0.93 16 26 H 0.09 0.53 7.68 -51.93 -0.40 0.13 16 27 C -0.13 -0.97 4.77 -28.30 -0.14 -1.10 16 28 C 0.11 0.78 5.75 -6.26 -0.04 0.75 16 29 H 0.06 0.43 8.10 -51.93 -0.42 0.01 16 30 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 0.35 8.08 -51.92 -0.42 -0.07 16 33 H 0.09 0.30 7.77 -51.93 -0.40 -0.11 16 34 H 0.08 0.28 7.81 -51.93 -0.41 -0.13 16 35 H 0.09 0.19 6.42 -51.93 -0.33 -0.14 16 36 H 0.08 0.29 8.14 -51.92 -0.42 -0.13 16 37 H 0.08 0.53 5.46 -51.93 -0.28 0.25 16 38 H 0.07 0.63 7.72 -51.93 -0.40 0.23 16 39 H 0.08 0.75 7.60 -51.93 -0.39 0.36 16 40 H 0.09 1.67 7.87 -51.91 -0.41 1.26 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.27 7.47 8.31 -40.82 -0.34 7.14 16 43 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.07 0.82 7.40 -51.93 -0.38 0.43 16 45 H 0.08 0.61 7.53 -51.93 -0.39 0.22 16 46 H 0.08 0.65 5.86 -51.93 -0.30 0.34 16 47 H 0.06 0.38 7.68 -51.93 -0.40 -0.02 16 48 H 0.09 0.80 6.98 -51.93 -0.36 0.44 16 LS Contribution 386.31 15.07 5.82 5.82 Total: -1.00 -36.81 386.31 -9.76 -46.58 By element: Atomic # 1 Polarization: 3.53 SS G_CDS: -7.79 Total: -4.26 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -0.45 Total: -2.46 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: -0.29 Total: -39.29 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.18 Total: -18.77 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -36.81 -9.76 -46.58 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074267553.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.985 kcal (2) G-P(sol) polarization free energy of solvation -36.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds