Wall clock time and date at job start Sat Apr 11 2020 06:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 109.46923 * 2 1 4 4 O 1.21274 * 120.00265 * 359.97438 * 3 2 1 5 5 N 1.34777 * 120.00040 * 179.97438 * 3 2 1 6 6 C 1.46859 * 126.12151 * 179.97438 * 5 3 2 7 7 C 1.53257 * 107.76218 * 200.52603 * 6 5 3 8 8 H 1.09001 * 109.17490 * 240.75283 * 7 6 5 9 9 C 1.51081 * 111.26770 * 120.13971 * 7 6 5 10 10 C 1.53132 * 111.94073 * 177.71255 * 9 7 6 11 11 N 1.49697 * 105.56640 * 100.01113 * 10 9 7 12 12 C 1.34775 * 122.72772 * 111.33010 * 11 10 9 13 13 O 1.21282 * 120.00577 * 0.02562 * 12 11 10 14 14 C 1.50703 * 119.99768 * 179.97438 * 12 11 10 15 15 S 1.81002 * 109.47349 * 180.02562 * 14 12 11 16 16 C 1.76199 * 100.00182 * 180.02562 * 15 14 12 17 17 H 1.07999 * 119.99976 * 0.02562 * 16 15 14 18 18 C 1.38803 * 119.99949 * 179.97438 * 16 15 14 19 19 N 1.31624 * 119.99746 * 179.97438 * 18 16 15 20 20 Si 1.86803 * 120.00005 * 0.02562 * 18 16 15 21 21 H 1.48503 * 109.46889 * 89.99690 * 20 18 16 22 22 H 1.48494 * 109.47191 * 209.99639 * 20 18 16 23 23 H 1.48501 * 109.46989 * 330.00246 * 20 18 16 24 24 C 1.43617 * 114.54010 * 291.60307 * 11 10 9 25 25 C 1.50792 * 114.95423 * 57.56692 * 24 11 10 26 26 C 1.51776 * 112.34040 * 275.47708 * 25 24 11 27 27 H 1.09003 * 111.74972 * 322.60948 * 26 25 24 28 28 C 1.47108 * 126.11745 * 359.97438 * 5 3 2 29 29 H 1.09005 * 109.46896 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47874 * 300.00100 * 1 2 3 31 31 H 1.09004 * 109.46857 * 60.00410 * 1 2 3 32 32 H 1.08997 * 109.47874 * 239.99900 * 2 1 3 33 33 H 1.09004 * 109.46857 * 119.99590 * 2 1 3 34 34 H 1.09004 * 109.79830 * 80.96005 * 6 5 3 35 35 H 1.09000 * 109.84910 * 320.11796 * 6 5 3 36 36 H 1.08998 * 108.99396 * 57.07561 * 9 7 6 37 37 H 1.09004 * 108.92041 * 298.29307 * 9 7 6 38 38 H 1.08999 * 110.21861 * 340.99957 * 10 9 7 39 39 H 1.09006 * 110.33798 * 219.08902 * 10 9 7 40 40 H 1.09005 * 109.46867 * 60.00428 * 14 12 11 41 41 H 1.09000 * 109.47235 * 300.00468 * 14 12 11 42 42 H 0.97005 * 119.99717 * 180.02562 * 19 18 16 43 43 H 1.08995 * 108.43961 * 178.95095 * 24 11 10 44 44 H 1.08995 * 108.43577 * 296.25098 * 24 11 10 45 45 H 1.09003 * 108.94463 * 154.69250 * 25 24 11 46 46 H 1.08991 * 108.73656 * 36.12165 * 25 24 11 47 47 H 1.08997 * 110.17448 * 268.75911 * 28 5 3 48 48 H 1.08994 * 110.17756 * 30.50416 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 8 1.2441 2.3426 -0.0005 5 7 3.3573 1.6672 0.0005 6 6 3.9916 2.9917 0.0001 7 6 5.4266 2.8227 -0.5109 8 1 6.1227 3.1418 0.2648 9 6 5.6638 3.6405 -1.7589 10 6 7.1095 3.5270 -2.2510 11 7 7.0758 2.5344 -3.3711 12 6 7.2933 2.8780 -4.6560 13 8 7.5286 4.0325 -4.9436 14 6 7.2452 1.8274 -5.7354 15 16 7.5760 2.5958 -7.3405 16 6 7.4604 1.1823 -8.3861 17 1 7.2401 0.2137 -7.9622 18 6 7.6513 1.3138 -9.7546 19 7 7.5654 0.2578 -10.5356 20 14 8.0316 2.9894 -10.4878 21 1 9.5020 3.1961 -10.5137 22 1 7.4978 3.0568 -11.8718 23 1 7.3976 4.0471 -9.6605 24 6 6.7869 1.1873 -2.9657 25 6 5.4820 1.0100 -2.2311 26 6 5.6118 1.2988 -0.7467 27 1 6.5652 0.9507 -0.3493 28 6 4.4270 0.6573 0.0017 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3635 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8932 -0.5138 0.8901 34 1 4.0052 3.3949 1.0127 35 1 3.4422 3.6649 -0.6580 36 1 5.4430 4.6862 -1.5451 37 1 4.9936 3.2900 -2.5438 38 1 7.7536 3.1678 -1.4484 39 1 7.4631 4.4923 -2.6135 40 1 6.2577 1.3661 -5.7497 41 1 7.9990 1.0660 -5.5352 42 1 7.6992 0.3497 -11.4919 43 1 6.7684 0.5563 -3.8543 44 1 7.5931 0.8415 -2.3188 45 1 5.1382 -0.0160 -2.3629 46 1 4.7439 1.6876 -2.6599 47 1 4.7150 0.4160 1.0248 48 1 4.0955 -0.2420 -0.5173 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074291646.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:38 Heat of formation + Delta-G solvation = -70.511130 kcal Electronic energy + Delta-G solvation = -27834.160142 eV Core-core repulsion = 24015.060068 eV Total energy + Delta-G solvation = -3819.100074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.15809 -39.76014 -38.47830 -36.17398 -33.67349 -32.91052 -32.74044 -32.45741 -30.02241 -28.68805 -27.99290 -25.64976 -25.06701 -23.82024 -23.11641 -22.67850 -19.74837 -19.59736 -19.22638 -17.80512 -17.55702 -16.88624 -16.70877 -15.94689 -15.72592 -15.52914 -15.12856 -14.96958 -14.60123 -14.47253 -13.95981 -13.82724 -13.59765 -13.56656 -13.25918 -12.93856 -12.85723 -12.79663 -12.65745 -12.36962 -12.03669 -12.00638 -11.91430 -11.80905 -11.59848 -11.52114 -11.28722 -11.02818 -11.01986 -10.79598 -10.64337 -10.51411 -10.13578 -9.87486 -9.51172 -9.04996 -9.02087 -8.64444 -8.51382 -6.94329 -6.30903 -4.02792 2.31685 2.61071 2.66813 2.88789 3.16493 3.31870 3.49409 3.56871 3.90713 3.97721 4.21000 4.31444 4.36084 4.50989 4.61375 4.67355 4.70817 4.75363 4.85982 4.91166 4.99404 5.04469 5.07120 5.08302 5.17851 5.19040 5.23093 5.35668 5.40205 5.44119 5.44873 5.51911 5.53224 5.58836 5.62304 5.68396 5.72370 5.83308 5.88713 5.90675 5.95910 5.98270 6.16289 6.46485 7.15062 7.53157 7.84157 7.92136 8.38855 8.39563 9.15386 10.78304 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.015524 B = 0.002491 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1803.255025 B =11236.257751 C =12132.930937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.140 4.140 3 C 0.527 3.473 4 O -0.540 6.540 5 N -0.618 5.618 6 C 0.110 3.890 7 C -0.093 4.093 8 H 0.081 0.919 9 C -0.134 4.134 10 C 0.116 3.884 11 N -0.618 5.618 12 C 0.540 3.460 13 O -0.517 6.517 14 C -0.121 4.121 15 S -0.142 6.142 16 C -0.521 4.521 17 H 0.088 0.912 18 C 0.096 3.904 19 N -0.880 5.880 20 Si 0.856 3.144 21 H -0.267 1.267 22 H -0.274 1.274 23 H -0.235 1.235 24 C 0.107 3.893 25 C -0.136 4.136 26 C -0.093 4.093 27 H 0.098 0.902 28 C 0.103 3.897 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.091 0.909 34 H 0.065 0.935 35 H 0.076 0.924 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.075 0.925 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.096 0.904 42 H 0.271 0.729 43 H 0.083 0.917 44 H 0.061 0.939 45 H 0.076 0.924 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.182 -2.439 27.075 27.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.180 4.180 3 C 0.316 3.684 4 O -0.417 6.417 5 N -0.353 5.353 6 C -0.012 4.012 7 C -0.112 4.112 8 H 0.100 0.900 9 C -0.172 4.172 10 C -0.006 4.006 11 N -0.354 5.354 12 C 0.329 3.671 13 O -0.391 6.391 14 C -0.271 4.271 15 S 0.084 5.916 16 C -0.668 4.668 17 H 0.106 0.894 18 C -0.113 4.113 19 N -0.517 5.517 20 Si 0.681 3.319 21 H -0.192 1.192 22 H -0.199 1.199 23 H -0.159 1.159 24 C -0.018 4.018 25 C -0.174 4.174 26 C -0.112 4.112 27 H 0.116 0.884 28 C -0.020 4.020 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.098 0.902 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.114 0.886 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.102 0.898 44 H 0.080 0.920 45 H 0.095 0.905 46 H 0.096 0.904 47 H 0.088 0.912 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.346 -0.322 26.410 27.163 hybrid contribution -0.011 -1.013 -0.127 1.021 sum -6.358 -1.335 26.282 27.073 Atomic orbital electron populations 1.21545 0.92870 1.01733 1.03422 1.21623 0.98666 0.93405 1.04282 1.20518 0.80167 0.92033 0.75633 1.90718 1.54315 1.46822 1.49814 1.48428 1.05119 1.08042 1.73671 1.21798 0.92674 0.85525 1.01249 1.21770 0.95861 0.95182 0.98434 0.90012 1.21864 0.97933 1.00184 0.97231 1.22156 0.95756 0.94303 0.88379 1.48022 1.71762 1.09396 1.06216 1.20203 0.75446 0.89632 0.81866 1.90697 1.47113 1.20160 1.81106 1.23299 1.05531 1.00508 0.97798 1.84813 1.93603 1.16341 0.96847 1.22296 1.56192 0.94245 0.94096 0.89412 1.24711 0.93431 0.97210 0.95943 1.69935 1.47493 1.29120 1.05132 0.86738 0.80205 0.85032 0.79908 1.19190 1.19928 1.15910 1.20450 0.96633 0.84071 1.00658 1.21536 0.98867 1.02808 0.94193 1.22180 0.98405 0.94727 0.95929 0.88414 1.22288 0.87084 0.92037 1.00565 0.91915 0.92036 0.91855 0.88798 0.89027 0.91682 0.90563 0.90951 0.90200 0.90641 0.88884 0.88590 0.88548 0.91921 0.89828 0.92046 0.90514 0.90400 0.91158 0.89975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 9.20 37.15 0.34 -0.65 16 2 C -0.14 -0.91 5.37 -27.89 -0.15 -1.06 16 3 C 0.53 5.30 7.86 -10.98 -0.09 5.21 16 4 O -0.54 -7.73 16.29 5.56 0.09 -7.64 16 5 N -0.62 -5.02 3.30 -172.07 -0.57 -5.59 16 6 C 0.11 0.89 6.54 -3.71 -0.02 0.87 16 7 C -0.09 -0.60 2.57 -90.23 -0.23 -0.83 16 8 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 9 C -0.13 -1.15 4.43 -27.63 -0.12 -1.28 16 10 C 0.12 1.16 6.25 -2.19 -0.01 1.14 16 11 N -0.62 -7.69 2.67 -174.53 -0.47 -8.15 16 12 C 0.54 9.49 7.78 -10.98 -0.09 9.40 16 13 O -0.52 -11.02 15.55 5.56 0.09 -10.93 16 14 C -0.12 -2.31 4.56 36.01 0.16 -2.14 16 15 S -0.14 -3.59 18.55 -107.50 -1.99 -5.58 16 16 C -0.52 -14.86 10.04 30.94 0.31 -14.55 16 17 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 18 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 19 N -0.88 -26.41 13.97 55.49 0.78 -25.63 16 20 Si 0.86 21.72 27.74 -169.99 -4.72 17.01 16 21 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.24 -5.97 6.74 56.52 0.38 -5.58 16 24 C 0.11 0.98 5.61 -6.68 -0.04 0.94 16 25 C -0.14 -0.99 4.67 -28.46 -0.13 -1.12 16 26 C -0.09 -0.50 3.14 -89.43 -0.28 -0.78 16 27 H 0.10 0.39 7.82 -51.93 -0.41 -0.01 16 28 C 0.10 0.52 6.23 -3.13 -0.02 0.50 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.06 0.49 8.10 -51.93 -0.42 0.07 16 31 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.09 0.49 7.83 -51.93 -0.41 0.08 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.77 7.65 -51.93 -0.40 0.37 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 0.87 5.58 -51.93 -0.29 0.58 16 38 H 0.08 0.57 7.84 -51.93 -0.41 0.17 16 39 H 0.09 1.10 7.31 -51.93 -0.38 0.72 16 40 H 0.10 1.72 7.85 -51.91 -0.41 1.31 16 41 H 0.10 1.71 7.90 -51.92 -0.41 1.30 16 42 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.08 0.83 6.00 -51.93 -0.31 0.52 16 44 H 0.06 0.46 7.73 -51.93 -0.40 0.06 16 45 H 0.08 0.46 7.57 -51.93 -0.39 0.07 16 46 H 0.08 0.75 5.79 -51.93 -0.30 0.45 16 47 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 48 H 0.08 0.32 6.67 -51.93 -0.35 -0.02 16 LS Contribution 383.71 15.07 5.78 5.78 Total: -1.00 -36.11 383.71 -9.28 -45.40 By element: Atomic # 1 Polarization: 4.81 SS G_CDS: -7.81 Total: -3.00 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -0.46 Total: -1.65 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: -0.26 Total: -39.38 kcal Atomic # 8 Polarization: -18.75 SS G_CDS: 0.18 Total: -18.57 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.72 Total: 17.01 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.99 Total: -5.58 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -36.11 -9.28 -45.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074291646.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.112 kcal (2) G-P(sol) polarization free energy of solvation -36.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds