Wall clock time and date at job start Sat Apr 11 2020 06:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.70621 * 2 1 4 4 C 1.52756 * 109.51044 * 239.87703 * 2 1 3 5 5 C 1.53040 * 109.38485 * 185.71321 * 4 2 1 6 6 H 1.09004 * 109.45730 * 301.22126 * 5 4 2 7 7 N 1.46505 * 109.44953 * 181.25695 * 5 4 2 8 8 C 1.34779 * 119.99793 * 154.93812 * 7 5 4 9 9 O 1.21274 * 120.00149 * 359.97438 * 8 7 5 10 10 C 1.50699 * 119.99541 * 179.97438 * 8 7 5 11 11 C 1.53771 * 113.61662 * 277.49600 * 10 8 7 12 12 C 1.53784 * 87.08330 * 220.01916 * 11 10 8 13 13 C 1.53780 * 87.07748 * 25.43320 * 12 11 10 14 14 C 1.53036 * 109.54225 * 61.23928 * 5 4 2 15 15 C 1.53198 * 109.31074 * 298.63886 * 14 5 4 16 16 N 1.46927 * 109.58021 * 120.35473 * 2 1 3 17 17 C 1.34774 * 120.63474 * 353.41491 * 16 2 1 18 18 O 1.21283 * 119.99973 * 353.92182 * 17 16 2 19 19 C 1.50699 * 120.00254 * 173.92236 * 17 16 2 20 20 S 1.81004 * 109.47259 * 180.02562 * 19 17 16 21 21 C 1.76198 * 100.00081 * 180.02562 * 20 19 17 22 22 H 1.08001 * 119.99739 * 0.02562 * 21 20 19 23 23 C 1.38794 * 119.99783 * 179.97438 * 21 20 19 24 24 N 1.31639 * 119.99902 * 179.97438 * 23 21 20 25 25 Si 1.86798 * 120.00266 * 0.02562 * 23 21 20 26 26 H 1.48500 * 109.46949 * 269.99604 * 25 23 21 27 27 H 1.48504 * 109.47191 * 29.99555 * 25 23 21 28 28 H 1.48502 * 109.47392 * 149.99853 * 25 23 21 29 29 H 1.09007 * 109.47083 * 305.45498 * 1 2 3 30 30 H 1.09007 * 109.46461 * 65.44363 * 1 2 3 31 31 H 1.08995 * 109.47548 * 185.44787 * 1 2 3 32 32 H 1.08998 * 109.56333 * 65.67382 * 4 2 1 33 33 H 1.09002 * 109.39082 * 305.63659 * 4 2 1 34 34 H 0.97001 * 119.99504 * 334.93311 * 7 5 4 35 35 H 1.08999 * 112.84848 * 48.80899 * 10 8 7 36 36 H 1.08993 * 113.61619 * 334.56830 * 11 10 8 37 37 H 1.09001 * 113.61509 * 105.47392 * 11 10 8 38 38 H 1.08998 * 113.61715 * 270.88268 * 12 11 10 39 39 H 1.09001 * 113.61139 * 139.97888 * 12 11 10 40 40 H 1.09005 * 113.61634 * 220.01530 * 13 12 11 41 41 H 1.09007 * 113.69240 * 89.12632 * 13 12 11 42 42 H 1.08994 * 109.49847 * 178.68886 * 14 5 4 43 43 H 1.09001 * 109.52290 * 58.60405 * 14 5 4 44 44 H 1.08999 * 109.58668 * 294.84164 * 15 14 5 45 45 H 1.09003 * 109.58621 * 174.41710 * 15 14 5 46 46 H 1.09000 * 109.46975 * 59.99919 * 19 17 16 47 47 H 1.09001 * 109.46958 * 299.99952 * 19 17 16 48 48 H 0.97000 * 119.99759 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0402 -0.7226 -1.2454 5 6 3.5638 -0.8464 -1.1724 6 1 4.0058 0.1473 -1.0994 7 7 4.0575 -1.5126 -2.3803 8 6 5.3215 -1.3011 -2.7976 9 8 6.0500 -0.5591 -2.1736 10 6 5.8294 -1.9868 -4.0397 11 6 6.3096 -3.4271 -3.7957 12 6 7.4673 -3.1211 -4.7607 13 6 7.2887 -1.6417 -4.3809 14 6 3.9522 -1.6688 0.0583 15 6 3.4643 -0.9520 1.3213 16 7 2.0224 -0.6996 1.1945 17 6 1.1672 -1.1069 2.1532 18 8 -0.0049 -0.8017 2.0898 19 6 1.6672 -1.9416 3.3040 20 16 0.2899 -2.3262 4.4136 21 6 1.1347 -3.2797 5.6309 22 1 2.1955 -3.4589 5.5359 23 6 0.4371 -3.7994 6.7124 24 7 1.0682 -4.5121 7.6216 25 14 -1.3974 -3.4887 6.8771 26 1 -1.6206 -2.2408 7.6506 27 1 -1.9990 -3.3483 5.5266 28 1 -2.0312 -4.6299 7.5852 29 1 -0.3633 0.5961 0.8372 30 1 -0.3632 0.4271 -0.9348 31 1 -0.3634 -1.0229 0.0976 32 1 1.7633 -0.1567 -2.1349 33 1 1.5964 -1.7170 -1.2941 34 1 3.4746 -2.1058 -2.8795 35 1 5.1486 -1.8894 -4.8854 36 1 6.6325 -3.6120 -2.7712 37 1 5.6207 -4.1859 -4.1669 38 1 7.2345 -3.3353 -5.8037 39 1 8.4221 -3.5409 -4.4441 40 1 7.3902 -0.9589 -5.2245 41 1 7.8788 -1.3370 -3.5165 42 1 5.0362 -1.7763 0.0968 43 1 3.4908 -2.6545 -0.0018 44 1 3.9928 -0.0050 1.4312 45 1 3.6501 -1.5798 2.1927 46 1 2.4304 -1.3873 3.8502 47 1 2.0950 -2.8684 2.9216 48 1 0.5806 -4.8756 8.3773 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074754941.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:45 Heat of formation + Delta-G solvation = -48.340545 kcal Electronic energy + Delta-G solvation = -27508.302255 eV Core-core repulsion = 23690.163570 eV Total energy + Delta-G solvation = -3818.138685 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.90113 -40.18553 -38.21557 -37.06017 -34.78910 -33.28785 -32.44505 -31.49747 -29.16059 -27.59826 -26.90491 -26.05270 -25.61231 -24.28091 -22.55424 -21.52180 -20.91739 -19.80573 -19.10968 -17.81282 -17.57372 -16.69723 -16.34766 -16.11326 -15.90666 -15.45252 -15.01716 -14.93872 -14.88220 -14.35235 -14.13895 -13.66371 -13.54392 -13.29303 -13.22382 -12.89215 -12.79847 -12.58305 -12.53012 -12.35254 -12.11709 -11.92487 -11.77107 -11.63253 -11.30194 -11.24413 -11.14401 -11.01541 -10.99881 -10.89842 -10.83841 -10.58687 -9.98506 -9.85843 -9.37120 -9.01090 -8.85678 -8.57193 -8.49647 -6.92478 -6.29542 -4.01240 2.31236 2.68224 2.78017 2.95921 3.16620 3.32417 3.49197 3.57610 4.05108 4.13672 4.24800 4.32005 4.35918 4.36749 4.51289 4.61819 4.71015 4.77072 4.84025 5.01319 5.06904 5.08777 5.09495 5.21030 5.23871 5.29592 5.33945 5.39553 5.44424 5.49327 5.52890 5.56829 5.64733 5.69460 5.71783 5.74271 5.80874 5.93310 5.97372 5.99546 6.17198 6.20304 6.40411 6.73401 7.17840 7.47443 7.92580 7.93511 8.41029 8.45785 9.16612 10.79694 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.018152 B = 0.002301 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.133446 B =12165.276295 C =13181.465377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.152 3.848 3 H 0.071 0.929 4 C -0.138 4.138 5 C 0.145 3.855 6 H 0.090 0.910 7 N -0.725 5.725 8 C 0.523 3.477 9 O -0.538 6.538 10 C -0.141 4.141 11 C -0.124 4.124 12 C -0.143 4.143 13 C -0.118 4.118 14 C -0.144 4.144 15 C 0.110 3.890 16 N -0.617 5.617 17 C 0.535 3.465 18 O -0.510 6.510 19 C -0.124 4.124 20 S -0.142 6.142 21 C -0.521 4.521 22 H 0.088 0.912 23 C 0.095 3.905 24 N -0.880 5.880 25 Si 0.857 3.143 26 H -0.267 1.267 27 H -0.235 1.235 28 H -0.275 1.275 29 H 0.084 0.916 30 H 0.041 0.959 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.400 0.600 35 H 0.112 0.888 36 H 0.086 0.914 37 H 0.075 0.925 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.072 0.928 45 H 0.095 0.905 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.345 5.311 -27.027 29.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.048 3.952 3 H 0.089 0.911 4 C -0.177 4.177 5 C 0.041 3.959 6 H 0.108 0.892 7 N -0.376 5.376 8 C 0.309 3.691 9 O -0.414 6.414 10 C -0.162 4.162 11 C -0.161 4.161 12 C -0.180 4.180 13 C -0.156 4.156 14 C -0.184 4.184 15 C -0.014 4.014 16 N -0.354 5.354 17 C 0.323 3.677 18 O -0.385 6.385 19 C -0.275 4.275 20 S 0.084 5.916 21 C -0.668 4.668 22 H 0.106 0.894 23 C -0.114 4.114 24 N -0.517 5.517 25 Si 0.682 3.318 26 H -0.192 1.192 27 H -0.159 1.159 28 H -0.200 1.200 29 H 0.102 0.898 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.234 0.766 35 H 0.130 0.870 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.101 0.899 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.114 0.886 42 H 0.098 0.902 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.113 0.887 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.122 6.204 -26.489 28.392 hybrid contribution 0.480 -0.767 0.148 0.917 sum 8.603 5.437 -26.341 28.238 Atomic orbital electron populations 1.22217 0.92051 1.04228 1.01107 1.21021 0.96230 0.94865 0.83101 0.91139 1.22248 0.94061 1.02515 0.98872 1.20971 0.93875 0.97163 0.83926 0.89234 1.46145 1.13759 1.49229 1.28465 1.20556 0.81395 0.81059 0.86078 1.90699 1.56030 1.37252 1.57462 1.22826 0.98903 0.97944 0.96521 1.22824 0.98316 0.94093 1.00902 1.22837 0.99027 0.96646 0.99515 1.22808 0.93884 0.96638 1.02257 1.22318 1.02103 0.99790 0.94163 1.21710 0.80294 1.00837 0.98511 1.48169 1.07190 1.59272 1.20722 1.20245 0.85798 0.79199 0.82445 1.90731 1.16980 1.55179 1.75625 1.23371 1.04426 1.01785 0.97875 1.84746 1.12314 1.68979 1.25566 1.22308 0.98438 1.37180 1.08890 0.89434 1.24720 0.98896 0.93480 0.94260 1.69944 1.36732 1.33383 1.11639 0.86727 0.85109 0.78765 0.81187 1.19220 1.15945 1.19981 0.89751 0.94041 0.91389 0.90194 0.90702 0.76595 0.87043 0.89552 0.90617 0.89878 0.90875 0.91066 0.88631 0.90185 0.90997 0.91014 0.88707 0.88677 0.88661 0.91950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 7.60 37.16 0.28 -1.48 16 2 C 0.15 1.68 3.48 -67.82 -0.24 1.45 16 3 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 4 C -0.14 -1.16 4.81 -26.84 -0.13 -1.29 16 5 C 0.15 1.28 2.42 -67.89 -0.16 1.12 16 6 H 0.09 0.93 7.58 -51.93 -0.39 0.53 16 7 N -0.73 -5.39 5.08 -53.76 -0.27 -5.66 16 8 C 0.52 4.76 7.32 -10.98 -0.08 4.68 16 9 O -0.54 -7.04 15.56 5.56 0.09 -6.96 16 10 C -0.14 -0.88 4.15 -90.96 -0.38 -1.25 16 11 C -0.12 -0.68 7.63 -25.92 -0.20 -0.88 16 12 C -0.14 -0.73 8.08 -25.92 -0.21 -0.93 16 13 C -0.12 -0.78 7.41 -25.92 -0.19 -0.98 16 14 C -0.14 -1.40 5.65 -26.61 -0.15 -1.55 16 15 C 0.11 1.21 6.35 -3.71 -0.02 1.18 16 16 N -0.62 -8.10 2.98 -165.47 -0.49 -8.59 16 17 C 0.54 9.30 7.51 -10.99 -0.08 9.21 16 18 O -0.51 -10.24 11.44 5.56 0.06 -10.18 16 19 C -0.12 -2.38 4.51 36.01 0.16 -2.22 16 20 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 21 C -0.52 -14.91 10.04 30.94 0.31 -14.60 16 22 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 23 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 24 N -0.88 -26.52 13.97 55.49 0.78 -25.74 16 25 Si 0.86 21.71 27.74 -169.99 -4.71 16.99 16 26 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 27 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 28 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 29 H 0.08 1.28 6.53 -51.93 -0.34 0.94 16 30 H 0.04 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.07 1.00 6.97 -51.93 -0.36 0.64 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.40 2.02 8.60 -40.82 -0.35 1.67 16 35 H 0.11 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.09 0.58 8.09 -51.93 -0.42 0.16 16 37 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 40 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 41 H 0.10 0.82 7.43 -51.93 -0.39 0.43 16 42 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.09 1.07 5.93 -51.93 -0.31 0.76 16 46 H 0.09 1.73 7.70 -51.92 -0.40 1.33 16 47 H 0.10 1.73 7.93 -51.91 -0.41 1.31 16 48 H 0.27 7.57 8.31 -40.82 -0.34 7.24 16 LS Contribution 389.54 15.07 5.87 5.87 Total: -1.00 -34.29 389.54 -9.88 -44.18 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -8.02 Total: 0.52 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.18 Total: -4.87 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: 0.01 Total: -39.99 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: 0.15 Total: -17.14 kcal Atomic # 14 Polarization: 21.71 SS G_CDS: -4.71 Total: 16.99 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.29 -9.88 -44.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074754941.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.163 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.341 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds