Wall clock time and date at job start Sat Apr 11 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.70094 * 2 1 4 4 C 1.53617 * 109.66609 * 120.59383 * 2 1 3 5 5 C 1.53048 * 109.24310 * 174.55064 * 4 2 1 6 6 H 1.09004 * 109.45663 * 58.53179 * 5 4 2 7 7 N 1.46494 * 109.44925 * 178.49750 * 5 4 2 8 8 C 1.34777 * 120.00054 * 205.06320 * 7 5 4 9 9 O 1.21284 * 119.99611 * 0.02562 * 8 7 5 10 10 C 1.50693 * 120.00303 * 180.02562 * 8 7 5 11 11 C 1.53002 * 109.47511 * 179.97438 * 10 8 7 12 12 C 1.52994 * 117.50167 * 243.62141 * 11 10 8 13 13 C 1.52997 * 60.00241 * 252.50781 * 12 11 10 14 14 C 1.53040 * 109.53763 * 298.51254 * 5 4 2 15 15 C 1.53198 * 109.31264 * 61.36218 * 14 5 4 16 16 N 1.46924 * 109.58833 * 239.65033 * 2 1 3 17 17 C 1.34777 * 120.63284 * 6.62249 * 16 2 1 18 18 O 1.21284 * 119.99630 * 354.63707 * 17 16 2 19 19 C 1.50700 * 120.00574 * 174.64151 * 17 16 2 20 20 S 1.80994 * 109.47253 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99910 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99944 * 359.97438 * 21 20 19 23 23 C 1.38807 * 120.00162 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99554 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00057 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47261 * 269.99628 * 25 23 21 27 27 H 1.48506 * 109.47458 * 29.99670 * 25 23 21 28 28 H 1.48505 * 109.47278 * 149.99660 * 25 23 21 29 29 H 1.09003 * 109.46816 * 176.11916 * 1 2 3 30 30 H 1.08996 * 109.47237 * 296.11729 * 1 2 3 31 31 H 1.08997 * 109.47037 * 56.12265 * 1 2 3 32 32 H 1.09004 * 109.63564 * 54.56465 * 4 2 1 33 33 H 1.08999 * 109.45964 * 294.43309 * 4 2 1 34 34 H 0.97001 * 120.00147 * 25.06014 * 7 5 4 35 35 H 1.09000 * 109.47468 * 299.99860 * 10 8 7 36 36 H 1.09004 * 109.47737 * 59.99631 * 10 8 7 37 37 H 1.09002 * 115.54435 * 29.33014 * 11 10 8 38 38 H 1.09004 * 117.49937 * 359.97438 * 12 11 10 39 39 H 1.09004 * 117.50012 * 145.02064 * 12 11 10 40 40 H 1.09000 * 117.49926 * 252.51026 * 13 12 11 41 41 H 1.09003 * 117.49562 * 107.48606 * 13 12 11 42 42 H 1.08994 * 109.49537 * 301.41259 * 14 5 4 43 43 H 1.08998 * 109.49845 * 181.31535 * 14 5 4 44 44 H 1.09002 * 109.58358 * 185.57666 * 15 14 5 45 45 H 1.08997 * 109.58297 * 65.15046 * 15 14 5 46 46 H 1.09000 * 109.46821 * 59.99634 * 19 17 16 47 47 H 1.09005 * 109.46872 * 300.00272 * 19 17 16 48 48 H 0.96997 * 120.00174 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2452 5 6 3.5713 -0.8497 1.1675 6 1 4.0066 0.1473 1.0990 7 7 4.0725 -1.5195 2.3701 8 6 5.3361 -1.3022 2.7854 9 8 6.0581 -0.5518 2.1637 10 6 5.8519 -1.9916 4.0222 11 6 7.3033 -1.5759 4.2701 12 6 8.3733 -2.6668 4.1954 13 6 7.9736 -2.0790 5.5502 14 6 3.9616 -1.6626 -0.0690 15 6 3.4657 -0.9418 -1.3265 16 7 2.0226 -0.6994 -1.1945 17 6 1.1675 -1.1060 -2.1537 18 8 -0.0282 -0.9833 -1.9918 19 6 1.6971 -1.7133 -3.4273 20 16 0.3127 -2.1545 -4.5064 21 6 1.1947 -2.8204 -5.8787 22 1 2.2740 -2.8549 -5.8616 23 6 0.5024 -3.2997 -6.9822 24 7 -0.8131 -3.2572 -7.0032 25 14 1.4374 -4.0063 -8.4367 26 1 1.7366 -2.9224 -9.4067 27 1 2.7083 -4.6105 -7.9621 28 1 0.6108 -5.0479 -9.0979 29 1 -0.3633 -1.0253 -0.0696 30 1 -0.3633 0.4524 0.9227 31 1 -0.3633 0.5728 -0.8532 32 1 1.6097 -1.7338 1.2888 33 1 1.7689 -0.1776 2.1389 34 1 3.4949 -2.1193 2.8676 35 1 5.2407 -1.7068 4.8786 36 1 5.8023 -3.0717 3.8837 37 1 7.5737 -0.5802 3.9183 38 1 8.0432 -3.6810 3.9700 39 1 9.3481 -2.3892 3.7942 40 1 8.6852 -1.4147 6.0403 41 1 7.3804 -2.7063 6.2157 42 1 3.5063 -2.6513 -0.0129 43 1 5.0462 -1.7629 -0.1110 44 1 3.6533 -1.5635 -2.2020 45 1 3.9877 0.0092 -1.4324 46 1 2.2728 -2.6082 -3.1911 47 1 2.3381 -0.9922 -3.9344 48 1 -1.2986 -2.8906 -6.2478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001074760792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:56 Heat of formation + Delta-G solvation = -49.087414 kcal Electronic energy + Delta-G solvation = -27161.662364 eV Core-core repulsion = 23343.491292 eV Total energy + Delta-G solvation = -3818.171072 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.74380 -39.89214 -37.83683 -37.04901 -34.80004 -33.25000 -32.53663 -31.79630 -29.75360 -28.89333 -27.30344 -24.85702 -24.43262 -22.80576 -22.63644 -21.74266 -21.00080 -20.39528 -19.14222 -18.16355 -17.58362 -16.70011 -16.46090 -16.13201 -15.80715 -15.48233 -15.44153 -14.65238 -14.57654 -14.20222 -13.99943 -13.86433 -13.84593 -13.55799 -13.25827 -12.84466 -12.57500 -12.43607 -12.35472 -12.14453 -12.01161 -11.94053 -11.87068 -11.84490 -11.70483 -11.27524 -11.17125 -10.92039 -10.89393 -10.78988 -10.47145 -10.19907 -10.11494 -9.58101 -9.38979 -9.02031 -8.80641 -8.56145 -8.22649 -6.67924 -6.63162 -4.00890 2.31492 2.70961 2.79687 2.95812 3.31559 3.38115 3.39042 3.42485 3.55495 4.21541 4.23043 4.24678 4.38004 4.46825 4.51755 4.66341 4.67815 4.82068 4.87616 4.96213 5.03689 5.06706 5.15375 5.16494 5.21313 5.21781 5.24263 5.37717 5.42199 5.47588 5.49633 5.55584 5.69109 5.69657 5.71080 5.75489 5.81220 5.86409 5.93467 5.99743 6.14454 6.21541 6.41711 6.75004 7.14009 7.47847 7.89431 7.91686 8.47463 8.49342 9.26026 10.80825 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.002158 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.338269 B =12969.287886 C =14361.976654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.151 3.849 3 H 0.071 0.929 4 C -0.138 4.138 5 C 0.146 3.854 6 H 0.090 0.910 7 N -0.729 5.729 8 C 0.515 3.485 9 O -0.536 6.536 10 C -0.111 4.111 11 C -0.142 4.142 12 C -0.178 4.178 13 C -0.181 4.181 14 C -0.144 4.144 15 C 0.111 3.889 16 N -0.618 5.618 17 C 0.535 3.465 18 O -0.509 6.509 19 C -0.131 4.131 20 S -0.116 6.116 21 C -0.607 4.607 22 H 0.065 0.935 23 C 0.035 3.965 24 N -0.884 5.884 25 Si 1.086 2.914 26 H -0.284 1.284 27 H -0.287 1.287 28 H -0.280 1.280 29 H 0.075 0.925 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.400 0.600 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.093 0.907 45 H 0.071 0.929 46 H 0.090 0.910 47 H 0.091 0.909 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.201 3.289 25.764 29.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.047 3.953 3 H 0.089 0.911 4 C -0.177 4.177 5 C 0.042 3.958 6 H 0.108 0.892 7 N -0.380 5.380 8 C 0.302 3.698 9 O -0.412 6.412 10 C -0.151 4.151 11 C -0.160 4.160 12 C -0.215 4.215 13 C -0.218 4.218 14 C -0.183 4.183 15 C -0.013 4.013 16 N -0.354 5.354 17 C 0.323 3.677 18 O -0.383 6.383 19 C -0.282 4.282 20 S 0.110 5.890 21 C -0.755 4.755 22 H 0.084 0.916 23 C -0.175 4.175 24 N -0.519 5.519 25 Si 0.913 3.087 26 H -0.210 1.210 27 H -0.213 1.213 28 H -0.205 1.205 29 H 0.094 0.906 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.098 0.902 34 H 0.234 0.766 35 H 0.115 0.885 36 H 0.113 0.887 37 H 0.136 0.864 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.111 0.889 45 H 0.089 0.911 46 H 0.108 0.892 47 H 0.109 0.891 48 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.733 3.340 24.065 27.430 hybrid contribution 1.674 0.119 1.525 2.267 sum 14.407 3.459 25.590 29.570 Atomic orbital electron populations 1.22218 0.91940 1.04429 1.00765 1.21233 0.96286 0.94674 0.83059 0.91097 1.22397 0.93928 1.02454 0.98908 1.20962 0.93834 0.97146 0.83892 0.89194 1.46135 1.13896 1.48968 1.28968 1.20610 0.81436 0.81617 0.86132 1.90707 1.56264 1.37022 1.57221 1.21234 0.96119 1.01362 0.96395 1.22053 0.91764 1.00311 1.01889 1.23044 0.99916 0.98093 1.00454 1.23005 1.03844 1.04071 0.90878 1.22315 1.02036 0.99794 0.94177 1.21683 0.80343 1.00790 0.98465 1.48172 1.07105 1.59491 1.20675 1.20260 0.86320 0.77242 0.83908 1.90749 1.15313 1.53712 1.78559 1.23412 1.05007 1.03091 0.96696 1.84770 1.08325 1.80182 1.15731 1.23727 0.96106 1.50902 1.04759 0.91627 1.26049 0.96342 0.94836 1.00306 1.70770 1.06712 1.40765 1.33625 0.83296 0.74454 0.76674 0.74325 1.21042 1.21300 1.20510 0.90631 0.94164 0.90516 0.90666 0.90242 0.76593 0.88475 0.88746 0.86373 0.88801 0.88678 0.88646 0.88763 0.91079 0.90137 0.88874 0.91102 0.89191 0.89080 0.90968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 7.60 37.16 0.28 -1.52 16 2 C 0.15 1.74 3.51 -67.38 -0.24 1.50 16 3 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.14 -1.20 4.86 -26.39 -0.13 -1.32 16 5 C 0.15 1.29 2.41 -67.89 -0.16 1.13 16 6 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 7 N -0.73 -5.23 5.08 -53.77 -0.27 -5.51 16 8 C 0.52 4.51 7.79 -10.99 -0.09 4.43 16 9 O -0.54 -6.87 15.22 5.55 0.08 -6.78 16 10 C -0.11 -0.64 5.98 -27.89 -0.17 -0.81 16 11 C -0.14 -1.00 5.41 -90.62 -0.49 -1.49 16 12 C -0.18 -1.13 10.18 -26.74 -0.27 -1.41 16 13 C -0.18 -0.99 10.25 -26.73 -0.27 -1.26 16 14 C -0.14 -1.42 5.65 -26.61 -0.15 -1.57 16 15 C 0.11 1.25 6.32 -3.71 -0.02 1.22 16 16 N -0.62 -8.42 2.97 -164.97 -0.49 -8.91 16 17 C 0.53 9.72 7.62 -10.99 -0.08 9.64 16 18 O -0.51 -10.68 11.26 5.55 0.06 -10.61 16 19 C -0.13 -2.64 4.56 36.01 0.16 -2.47 16 20 S -0.12 -3.10 19.60 -107.50 -2.11 -5.21 16 21 C -0.61 -17.45 9.50 30.94 0.29 -17.15 16 22 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 23 C 0.04 1.02 5.49 -17.43 -0.10 0.93 16 24 N -0.88 -27.46 13.67 55.49 0.76 -26.70 16 25 Si 1.09 25.01 29.92 -169.99 -5.09 19.93 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.29 -6.22 7.11 56.52 0.40 -5.81 16 28 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 29 H 0.07 1.17 6.73 -51.93 -0.35 0.82 16 30 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.08 1.21 6.77 -51.93 -0.35 0.86 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.40 1.86 8.60 -40.82 -0.35 1.51 16 35 H 0.10 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.09 0.41 7.87 -51.93 -0.41 0.00 16 37 H 0.12 1.07 7.30 -51.93 -0.38 0.69 16 38 H 0.09 0.53 8.03 -51.93 -0.42 0.11 16 39 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 41 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.09 1.08 5.96 -51.93 -0.31 0.77 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.09 1.70 7.48 -51.92 -0.39 1.31 16 47 H 0.09 1.74 8.11 -51.91 -0.42 1.32 16 48 H 0.28 8.80 7.12 -40.82 -0.29 8.51 16 LS Contribution 395.11 15.07 5.95 5.95 Total: -1.00 -35.44 395.11 -10.44 -45.88 By element: Atomic # 1 Polarization: 10.03 SS G_CDS: -7.92 Total: 2.12 kcal Atomic # 6 Polarization: -8.73 SS G_CDS: -1.43 Total: -10.16 kcal Atomic # 7 Polarization: -41.11 SS G_CDS: 0.00 Total: -41.11 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.15 Total: -17.40 kcal Atomic # 14 Polarization: 25.01 SS G_CDS: -5.09 Total: 19.93 kcal Atomic # 16 Polarization: -3.10 SS G_CDS: -2.11 Total: -5.21 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.44 -10.44 -45.88 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074760792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.206 kcal (2) G-P(sol) polarization free energy of solvation -35.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds