Wall clock time and date at job start Sat Apr 11 2020 06:04:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.70094 * 2 1 4 4 C 1.53617 * 109.66609 * 120.59383 * 2 1 3 5 5 C 1.53048 * 109.24310 * 174.55064 * 4 2 1 6 6 H 1.09004 * 109.45663 * 58.53179 * 5 4 2 7 7 N 1.46494 * 109.44925 * 178.49750 * 5 4 2 8 8 C 1.34777 * 120.00054 * 205.06320 * 7 5 4 9 9 O 1.21284 * 119.99611 * 0.02562 * 8 7 5 10 10 C 1.50693 * 120.00303 * 180.02562 * 8 7 5 11 11 C 1.53002 * 109.47511 * 179.97438 * 10 8 7 12 12 C 1.52994 * 117.50167 * 243.62141 * 11 10 8 13 13 C 1.52997 * 60.00241 * 252.50781 * 12 11 10 14 14 C 1.53040 * 109.53763 * 298.51254 * 5 4 2 15 15 C 1.53198 * 109.31264 * 61.36218 * 14 5 4 16 16 N 1.46924 * 109.58833 * 239.65033 * 2 1 3 17 17 C 1.34777 * 120.63284 * 6.62249 * 16 2 1 18 18 O 1.21284 * 119.99630 * 354.63707 * 17 16 2 19 19 C 1.50700 * 120.00574 * 174.64151 * 17 16 2 20 20 S 1.80994 * 109.47253 * 179.97438 * 19 17 16 21 21 C 1.76199 * 99.99910 * 179.97438 * 20 19 17 22 22 H 1.08000 * 119.99944 * 359.97438 * 21 20 19 23 23 C 1.38807 * 120.00162 * 180.02562 * 21 20 19 24 24 N 1.31631 * 119.99554 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 120.00057 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47261 * 269.99628 * 25 23 21 27 27 H 1.48506 * 109.47458 * 29.99670 * 25 23 21 28 28 H 1.48505 * 109.47278 * 149.99660 * 25 23 21 29 29 H 1.09003 * 109.46816 * 176.11916 * 1 2 3 30 30 H 1.08996 * 109.47237 * 296.11729 * 1 2 3 31 31 H 1.08997 * 109.47037 * 56.12265 * 1 2 3 32 32 H 1.09004 * 109.63564 * 54.56465 * 4 2 1 33 33 H 1.08999 * 109.45964 * 294.43309 * 4 2 1 34 34 H 0.97001 * 120.00147 * 25.06014 * 7 5 4 35 35 H 1.09000 * 109.47468 * 299.99860 * 10 8 7 36 36 H 1.09004 * 109.47737 * 59.99631 * 10 8 7 37 37 H 1.09002 * 115.54435 * 29.33014 * 11 10 8 38 38 H 1.09004 * 117.49937 * 359.97438 * 12 11 10 39 39 H 1.09004 * 117.50012 * 145.02064 * 12 11 10 40 40 H 1.09000 * 117.49926 * 252.51026 * 13 12 11 41 41 H 1.09003 * 117.49562 * 107.48606 * 13 12 11 42 42 H 1.08994 * 109.49537 * 301.41259 * 14 5 4 43 43 H 1.08998 * 109.49845 * 181.31535 * 14 5 4 44 44 H 1.09002 * 109.58358 * 185.57666 * 15 14 5 45 45 H 1.08997 * 109.58297 * 65.15046 * 15 14 5 46 46 H 1.09000 * 109.46821 * 59.99634 * 19 17 16 47 47 H 1.09005 * 109.46872 * 300.00272 * 19 17 16 48 48 H 0.96997 * 120.00174 * 0.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0470 -0.7362 1.2452 5 6 3.5713 -0.8497 1.1675 6 1 4.0066 0.1473 1.0990 7 7 4.0725 -1.5195 2.3701 8 6 5.3361 -1.3022 2.7854 9 8 6.0581 -0.5518 2.1637 10 6 5.8519 -1.9916 4.0222 11 6 7.3033 -1.5759 4.2701 12 6 8.3733 -2.6668 4.1954 13 6 7.9736 -2.0790 5.5502 14 6 3.9616 -1.6626 -0.0690 15 6 3.4657 -0.9418 -1.3265 16 7 2.0226 -0.6994 -1.1945 17 6 1.1675 -1.1060 -2.1537 18 8 -0.0282 -0.9833 -1.9918 19 6 1.6971 -1.7133 -3.4273 20 16 0.3127 -2.1545 -4.5064 21 6 1.1947 -2.8204 -5.8787 22 1 2.2740 -2.8549 -5.8616 23 6 0.5024 -3.2997 -6.9822 24 7 -0.8131 -3.2572 -7.0032 25 14 1.4374 -4.0063 -8.4367 26 1 1.7366 -2.9224 -9.4067 27 1 2.7083 -4.6105 -7.9621 28 1 0.6108 -5.0479 -9.0979 29 1 -0.3633 -1.0253 -0.0696 30 1 -0.3633 0.4524 0.9227 31 1 -0.3633 0.5728 -0.8532 32 1 1.6097 -1.7338 1.2888 33 1 1.7689 -0.1776 2.1389 34 1 3.4949 -2.1193 2.8676 35 1 5.2407 -1.7068 4.8786 36 1 5.8023 -3.0717 3.8837 37 1 7.5737 -0.5802 3.9183 38 1 8.0432 -3.6810 3.9700 39 1 9.3481 -2.3892 3.7942 40 1 8.6852 -1.4147 6.0403 41 1 7.3804 -2.7063 6.2157 42 1 3.5063 -2.6513 -0.0129 43 1 5.0462 -1.7629 -0.1110 44 1 3.6533 -1.5635 -2.2020 45 1 3.9877 0.0092 -1.4324 46 1 2.2728 -2.6082 -3.1911 47 1 2.3381 -0.9922 -3.9344 48 1 -1.2986 -2.8906 -6.2478 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001074760792.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:04:55 Heat of formation + Delta-G solvation = -71.894492 kcal Electronic energy + Delta-G solvation = -27162.651353 eV Core-core repulsion = 23343.491292 eV Total energy + Delta-G solvation = -3819.160061 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.161 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.76198 -40.78140 -38.68791 -37.80433 -35.72718 -34.75906 -34.29884 -32.66041 -30.74704 -29.92482 -28.30694 -27.06885 -25.36996 -23.57679 -23.22194 -22.61529 -21.73511 -21.04421 -20.64396 -19.88260 -18.26923 -17.85736 -17.44045 -17.23842 -16.87351 -16.44104 -16.26255 -16.05313 -15.73474 -15.31685 -15.08054 -14.92562 -14.75292 -14.66908 -14.51863 -14.37427 -13.85257 -13.62211 -13.49027 -13.37474 -13.31760 -12.99348 -12.78487 -12.72536 -12.39538 -12.31600 -12.15468 -12.06202 -11.95394 -11.74470 -11.54410 -11.30086 -11.11423 -10.98722 -10.76548 -10.32872 -10.19367 -10.09205 -9.70652 -8.93352 -8.86745 -6.27966 1.17306 1.48971 1.50505 1.60002 1.67136 1.78287 1.97662 2.14015 2.32591 2.93209 3.01287 3.07801 3.44592 3.66190 3.70512 3.74053 3.78129 3.90372 3.98564 4.05812 4.11179 4.16691 4.18355 4.28326 4.32273 4.34117 4.47537 4.57313 4.61504 4.69030 4.74723 4.78090 4.81135 4.81983 4.85685 4.94727 5.04619 5.06778 5.22470 5.27188 5.33927 5.34989 5.49466 5.63363 5.65788 6.14476 6.21919 6.58073 7.05030 7.09948 7.29005 8.50198 Molecular weight = 340.16amu Principal moments of inertia in cm(-1) A = 0.016122 B = 0.002158 C = 0.001949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1736.338269 B =12969.287886 C =14361.976654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.146 3.854 3 H 0.088 0.912 4 C -0.124 4.124 5 C 0.151 3.849 6 H 0.080 0.920 7 N -0.716 5.716 8 C 0.513 3.487 9 O -0.582 6.582 10 C -0.103 4.103 11 C -0.158 4.158 12 C -0.187 4.187 13 C -0.166 4.166 14 C -0.135 4.135 15 C 0.106 3.894 16 N -0.604 5.604 17 C 0.534 3.466 18 O -0.544 6.544 19 C -0.109 4.109 20 S -0.189 6.189 21 C -0.614 4.614 22 H 0.072 0.928 23 C -0.018 4.018 24 N -0.912 5.912 25 Si 1.137 2.863 26 H -0.268 1.268 27 H -0.263 1.263 28 H -0.278 1.278 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.044 0.956 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.416 0.584 35 H 0.122 0.878 36 H 0.115 0.885 37 H 0.091 0.909 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.097 0.903 41 H 0.112 0.888 42 H 0.070 0.930 43 H 0.078 0.922 44 H 0.089 0.911 45 H 0.086 0.914 46 H 0.104 0.896 47 H 0.103 0.897 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.120 2.765 27.832 32.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.043 3.957 3 H 0.106 0.894 4 C -0.163 4.163 5 C 0.046 3.954 6 H 0.098 0.902 7 N -0.368 5.368 8 C 0.301 3.699 9 O -0.461 6.461 10 C -0.142 4.142 11 C -0.176 4.176 12 C -0.224 4.224 13 C -0.203 4.203 14 C -0.175 4.175 15 C -0.017 4.017 16 N -0.339 5.339 17 C 0.321 3.679 18 O -0.422 6.422 19 C -0.261 4.261 20 S 0.038 5.962 21 C -0.762 4.762 22 H 0.090 0.910 23 C -0.222 4.222 24 N -0.548 5.548 25 Si 0.955 3.045 26 H -0.193 1.193 27 H -0.188 1.188 28 H -0.203 1.203 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.093 0.907 33 H 0.123 0.877 34 H 0.253 0.747 35 H 0.140 0.860 36 H 0.133 0.867 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.115 0.885 41 H 0.130 0.870 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.107 0.893 45 H 0.104 0.896 46 H 0.123 0.877 47 H 0.121 0.879 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 14.670 2.818 26.204 30.163 hybrid contribution 1.146 0.366 1.014 1.573 sum 15.815 3.184 27.218 31.640 Atomic orbital electron populations 1.22027 0.93218 1.02445 1.00876 1.21472 0.95274 0.95780 0.83168 0.89430 1.22269 0.93438 1.02427 0.98143 1.20785 0.93804 0.96616 0.84173 0.90236 1.45989 1.13772 1.48695 1.28301 1.21170 0.81266 0.80937 0.86544 1.90695 1.57507 1.39154 1.58789 1.21257 0.95303 1.02068 0.95589 1.22013 0.92892 0.99297 1.03436 1.23124 0.99507 0.98354 1.01461 1.23082 1.03289 1.03532 0.90415 1.22220 1.01695 0.99646 0.93911 1.21883 0.78750 1.01800 0.99263 1.48148 1.07604 1.58053 1.20123 1.19952 0.86232 0.77594 0.84137 1.90764 1.16789 1.55458 1.79207 1.23318 1.02095 1.04158 0.96505 1.84950 1.13053 1.80631 1.17551 1.24054 0.96501 1.50373 1.05253 0.90959 1.27802 0.96354 0.94548 1.03476 1.70889 1.07956 1.42623 1.33301 0.82700 0.74007 0.76532 0.71223 1.19337 1.18777 1.20329 0.93209 0.91087 0.93716 0.90674 0.87666 0.74733 0.85978 0.86734 0.89055 0.87873 0.89445 0.88500 0.86969 0.91164 0.90381 0.89251 0.89614 0.87749 0.87902 0.92797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.31 7.60 71.98 0.55 -2.76 16 2 C 0.15 3.07 3.51 45.12 0.16 3.23 16 3 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 4 C -0.12 -1.78 4.86 30.82 0.15 -1.63 16 5 C 0.15 2.30 2.41 45.02 0.11 2.41 16 6 H 0.08 1.46 7.58 -2.38 -0.02 1.44 16 7 N -0.72 -8.20 5.08 -442.40 -2.25 -10.45 16 8 C 0.51 7.91 7.79 87.65 0.68 8.59 16 9 O -0.58 -14.45 15.22 -3.04 -0.05 -14.50 16 10 C -0.10 -0.89 5.98 29.85 0.18 -0.71 16 11 C -0.16 -2.01 5.41 -10.79 -0.06 -2.07 16 12 C -0.19 -2.13 10.18 30.59 0.31 -1.82 16 13 C -0.17 -1.45 10.25 30.59 0.31 -1.14 16 14 C -0.14 -2.39 5.65 30.67 0.17 -2.22 16 15 C 0.11 2.19 6.32 86.36 0.55 2.74 16 16 N -0.60 -15.75 2.97 -794.22 -2.36 -18.10 16 17 C 0.53 19.44 7.62 87.66 0.67 20.11 16 18 O -0.54 -23.57 11.26 -3.04 -0.03 -23.60 16 19 C -0.11 -4.40 4.56 71.24 0.32 -4.08 16 20 S -0.19 -10.37 19.60 -56.49 -1.11 -11.48 16 21 C -0.61 -35.61 9.50 67.96 0.65 -34.97 16 22 H 0.07 3.96 7.80 -2.91 -0.02 3.94 16 23 C -0.02 -1.08 5.49 84.86 0.47 -0.61 16 24 N -0.91 -58.01 13.67 21.65 0.30 -57.71 16 25 Si 1.14 49.65 29.92 68.60 2.05 51.71 16 26 H -0.27 -10.95 7.11 99.48 0.71 -10.25 16 27 H -0.26 -10.38 7.11 99.48 0.71 -9.68 16 28 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 29 H 0.05 1.54 6.73 -2.39 -0.02 1.53 16 30 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.04 1.44 6.77 -2.39 -0.02 1.42 16 32 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.42 2.31 8.60 -92.71 -0.80 1.52 16 35 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.11 0.57 7.87 -2.38 -0.02 0.55 16 37 H 0.09 1.67 7.30 -2.39 -0.02 1.65 16 38 H 0.10 0.95 8.03 -2.38 -0.02 0.93 16 39 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 42 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 43 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 44 H 0.09 1.93 5.96 -2.39 -0.01 1.92 16 45 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.10 3.87 7.48 -2.40 -0.02 3.85 16 47 H 0.10 3.87 8.11 -2.39 -0.02 3.85 16 48 H 0.26 17.23 7.12 -92.71 -0.66 16.57 16 Total: -1.00 -80.86 395.11 2.04 -78.82 By element: Atomic # 1 Polarization: 19.97 SS G_CDS: 0.27 Total: 20.24 kcal Atomic # 6 Polarization: -20.14 SS G_CDS: 5.22 Total: -14.92 kcal Atomic # 7 Polarization: -81.96 SS G_CDS: -4.31 Total: -86.26 kcal Atomic # 8 Polarization: -38.02 SS G_CDS: -0.08 Total: -38.10 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 2.05 Total: 51.71 kcal Atomic # 16 Polarization: -10.37 SS G_CDS: -1.11 Total: -11.48 kcal Total: -80.86 2.04 -78.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001074760792.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.924 kcal (2) G-P(sol) polarization free energy of solvation -80.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds